Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1223 and Shewana3_1224 are separated by 121 nucleotides Shewana3_1224 and Shewana3_1225 are separated by 97 nucleotides
Shewana3_1223: Shewana3_1223 - LysR family transcriptional regulator (RefSeq), at 1,425,280 to 1,426,242
_1223
Shewana3_1224: Shewana3_1224 - metallophosphoesterase (RefSeq), at 1,426,364 to 1,428,115
_1224
Shewana3_1225: Shewana3_1225 - hypothetical protein (RefSeq), at 1,428,213 to 1,429,304
_1225
Position (kb)
1426
1427
1428
1429 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1425.456 kb on + strand, within Shewana3_1223 at 1425.456 kb on + strand, within Shewana3_1223 at 1425.456 kb on + strand, within Shewana3_1223 at 1425.456 kb on + strand, within Shewana3_1223 at 1425.456 kb on + strand, within Shewana3_1223 at 1425.464 kb on - strand, within Shewana3_1223 at 1425.526 kb on + strand, within Shewana3_1223 at 1425.590 kb on + strand, within Shewana3_1223 at 1425.634 kb on + strand, within Shewana3_1223 at 1425.661 kb on - strand, within Shewana3_1223 at 1425.749 kb on - strand, within Shewana3_1223 at 1425.768 kb on + strand, within Shewana3_1223 at 1425.983 kb on - strand, within Shewana3_1223 at 1426.178 kb on - strand at 1426.232 kb on + strand at 1426.348 kb on - strand at 1426.396 kb on - strand at 1426.642 kb on + strand, within Shewana3_1224 at 1426.722 kb on + strand, within Shewana3_1224 at 1426.875 kb on - strand, within Shewana3_1224 at 1426.889 kb on - strand, within Shewana3_1224 at 1426.988 kb on - strand, within Shewana3_1224 at 1427.024 kb on + strand, within Shewana3_1224 at 1427.232 kb on - strand, within Shewana3_1224 at 1427.344 kb on - strand, within Shewana3_1224 at 1427.351 kb on + strand, within Shewana3_1224 at 1427.392 kb on - strand, within Shewana3_1224 at 1427.398 kb on + strand, within Shewana3_1224 at 1427.398 kb on + strand, within Shewana3_1224 at 1427.586 kb on - strand, within Shewana3_1224 at 1427.682 kb on + strand, within Shewana3_1224 at 1427.690 kb on - strand, within Shewana3_1224 at 1428.083 kb on - strand at 1428.083 kb on - strand at 1428.119 kb on - strand at 1428.367 kb on - strand, within Shewana3_1225 at 1428.805 kb on + strand, within Shewana3_1225 at 1428.845 kb on - strand, within Shewana3_1225 at 1428.944 kb on + strand, within Shewana3_1225 at 1428.952 kb on - strand, within Shewana3_1225 at 1429.108 kb on - strand, within Shewana3_1225
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 1,425,456 + Shewana3_1223 0.18 -0.1 1,425,456 + Shewana3_1223 0.18 +0.2 1,425,456 + Shewana3_1223 0.18 +0.3 1,425,456 + Shewana3_1223 0.18 -0.4 1,425,456 + Shewana3_1223 0.18 +0.1 1,425,464 - Shewana3_1223 0.19 +0.6 1,425,526 + Shewana3_1223 0.26 +1.4 1,425,590 + Shewana3_1223 0.32 -2.4 1,425,634 + Shewana3_1223 0.37 +0.9 1,425,661 - Shewana3_1223 0.40 +1.4 1,425,749 - Shewana3_1223 0.49 -0.2 1,425,768 + Shewana3_1223 0.51 +0.4 1,425,983 - Shewana3_1223 0.73 -0.2 1,426,178 - +1.7 1,426,232 + -0.2 1,426,348 - -0.1 1,426,396 - -1.8 1,426,642 + Shewana3_1224 0.16 -2.8 1,426,722 + Shewana3_1224 0.20 +2.2 1,426,875 - Shewana3_1224 0.29 -0.2 1,426,889 - Shewana3_1224 0.30 +1.6 1,426,988 - Shewana3_1224 0.36 +0.8 1,427,024 + Shewana3_1224 0.38 -2.0 1,427,232 - Shewana3_1224 0.50 -0.7 1,427,344 - Shewana3_1224 0.56 +0.0 1,427,351 + Shewana3_1224 0.56 -1.6 1,427,392 - Shewana3_1224 0.59 -0.6 1,427,398 + Shewana3_1224 0.59 -3.3 1,427,398 + Shewana3_1224 0.59 -2.6 1,427,586 - Shewana3_1224 0.70 +0.2 1,427,682 + Shewana3_1224 0.75 -1.1 1,427,690 - Shewana3_1224 0.76 +1.1 1,428,083 - -0.5 1,428,083 - -0.2 1,428,119 - +0.4 1,428,367 - Shewana3_1225 0.14 +0.5 1,428,805 + Shewana3_1225 0.54 +0.5 1,428,845 - Shewana3_1225 0.58 +1.2 1,428,944 + Shewana3_1225 0.67 +0.3 1,428,952 - Shewana3_1225 0.68 -1.0 1,429,108 - Shewana3_1225 0.82 -0.6
Or see this region's nucleotide sequence