Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1218

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1216 and Shewana3_1217 are separated by 211 nucleotidesShewana3_1217 and Shewana3_1218 are separated by 127 nucleotidesShewana3_1218 and Shewana3_1219 are separated by 167 nucleotidesShewana3_1219 and Shewana3_1220 are separated by 63 nucleotides Shewana3_1216: Shewana3_1216 - acetyltransferase (RefSeq), at 1,421,348 to 1,421,806 _1216 Shewana3_1217: Shewana3_1217 - hypothetical protein (RefSeq), at 1,422,018 to 1,422,227 _1217 Shewana3_1218: Shewana3_1218 - NrfJ-related protein (RefSeq), at 1,422,355 to 1,422,657 _1218 Shewana3_1219: Shewana3_1219 - acetyltransferase (RefSeq), at 1,422,825 to 1,423,346 _1219 Shewana3_1220: Shewana3_1220 - acetyltransferase (RefSeq), at 1,423,410 to 1,423,940 _1220 Position (kb) 1422 1423Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1421.399 kb on + strand, within Shewana3_1216at 1421.487 kb on - strand, within Shewana3_1216at 1421.624 kb on + strand, within Shewana3_1216at 1421.656 kb on + strand, within Shewana3_1216at 1421.664 kb on + strand, within Shewana3_1216at 1421.825 kb on + strandat 1421.825 kb on + strandat 1421.837 kb on + strandat 1421.837 kb on + strandat 1421.845 kb on - strandat 1422.104 kb on + strand, within Shewana3_1217at 1422.188 kb on - strand, within Shewana3_1217at 1422.201 kb on - strand, within Shewana3_1217at 1422.226 kb on - strandat 1422.472 kb on + strand, within Shewana3_1218at 1422.887 kb on - strand, within Shewana3_1219at 1422.956 kb on + strand, within Shewana3_1219at 1422.964 kb on - strand, within Shewana3_1219at 1422.964 kb on - strand, within Shewana3_1219at 1423.111 kb on + strand, within Shewana3_1219at 1423.158 kb on - strand, within Shewana3_1219at 1423.270 kb on - strand, within Shewana3_1219at 1423.471 kb on + strand, within Shewana3_1220at 1423.473 kb on + strand, within Shewana3_1220at 1423.630 kb on + strand, within Shewana3_1220at 1423.645 kb on - strand, within Shewana3_1220

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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1,421,399 + Shewana3_1216 0.11 +1.0
1,421,487 - Shewana3_1216 0.30 -2.0
1,421,624 + Shewana3_1216 0.60 -0.0
1,421,656 + Shewana3_1216 0.67 +1.0
1,421,664 + Shewana3_1216 0.69 -0.2
1,421,825 + +0.6
1,421,825 + +0.9
1,421,837 + -2.4
1,421,837 + -1.6
1,421,845 - +0.4
1,422,104 + Shewana3_1217 0.41 -0.8
1,422,188 - Shewana3_1217 0.81 +1.2
1,422,201 - Shewana3_1217 0.87 -2.5
1,422,226 - -1.3
1,422,472 + Shewana3_1218 0.39 +0.8
1,422,887 - Shewana3_1219 0.12 +0.9
1,422,956 + Shewana3_1219 0.25 -1.3
1,422,964 - Shewana3_1219 0.27 +0.3
1,422,964 - Shewana3_1219 0.27 +0.9
1,423,111 + Shewana3_1219 0.55 +1.5
1,423,158 - Shewana3_1219 0.64 -1.4
1,423,270 - Shewana3_1219 0.85 +3.4
1,423,471 + Shewana3_1220 0.11 -1.8
1,423,473 + Shewana3_1220 0.12 -0.6
1,423,630 + Shewana3_1220 0.41 -0.8
1,423,645 - Shewana3_1220 0.44 +0.9

Or see this region's nucleotide sequence