Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1079 and Shewana3_1080 are separated by 20 nucleotides Shewana3_1080 and Shewana3_1081 are separated by 113 nucleotides Shewana3_1081 and Shewana3_1082 are separated by 143 nucleotides
Shewana3_1079: Shewana3_1079 - metal dependent phosphohydrolase (RefSeq), at 1,266,968 to 1,268,236
_1079
Shewana3_1080: Shewana3_1080 - hypothetical protein (RefSeq), at 1,268,257 to 1,268,769
_1080
Shewana3_1081: Shewana3_1081 - AraC family transcriptional regulator (RefSeq), at 1,268,883 to 1,269,650
_1081
Shewana3_1082: Shewana3_1082 - major facilitator transporter (RefSeq), at 1,269,794 to 1,270,972
_1082
Position (kb)
1268
1269
1270 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1267.894 kb on - strand, within Shewana3_1079 at 1268.013 kb on + strand, within Shewana3_1079 at 1268.193 kb on - strand at 1268.255 kb on + strand at 1268.263 kb on - strand at 1268.336 kb on + strand, within Shewana3_1080 at 1268.415 kb on + strand, within Shewana3_1080 at 1268.461 kb on - strand, within Shewana3_1080 at 1268.548 kb on - strand, within Shewana3_1080 at 1268.576 kb on - strand, within Shewana3_1080 at 1268.612 kb on + strand, within Shewana3_1080 at 1268.673 kb on + strand, within Shewana3_1080 at 1268.769 kb on + strand at 1269.206 kb on - strand, within Shewana3_1081 at 1269.256 kb on - strand, within Shewana3_1081 at 1269.278 kb on - strand, within Shewana3_1081 at 1269.404 kb on + strand, within Shewana3_1081 at 1269.549 kb on + strand, within Shewana3_1081 at 1269.708 kb on + strand at 1269.708 kb on + strand at 1269.708 kb on + strand at 1270.035 kb on - strand, within Shewana3_1082 at 1270.078 kb on + strand, within Shewana3_1082 at 1270.115 kb on + strand, within Shewana3_1082 at 1270.231 kb on + strand, within Shewana3_1082 at 1270.246 kb on + strand, within Shewana3_1082 at 1270.253 kb on + strand, within Shewana3_1082 at 1270.597 kb on - strand, within Shewana3_1082 at 1270.650 kb on + strand, within Shewana3_1082
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 1,267,894 - Shewana3_1079 0.73 -2.2 1,268,013 + Shewana3_1079 0.82 -0.1 1,268,193 - -0.5 1,268,255 + +0.5 1,268,263 - +0.5 1,268,336 + Shewana3_1080 0.15 -0.6 1,268,415 + Shewana3_1080 0.31 -1.2 1,268,461 - Shewana3_1080 0.40 +0.9 1,268,548 - Shewana3_1080 0.57 +0.5 1,268,576 - Shewana3_1080 0.62 +0.1 1,268,612 + Shewana3_1080 0.69 -2.9 1,268,673 + Shewana3_1080 0.81 -0.5 1,268,769 + -1.1 1,269,206 - Shewana3_1081 0.42 -2.5 1,269,256 - Shewana3_1081 0.49 -0.6 1,269,278 - Shewana3_1081 0.51 +1.3 1,269,404 + Shewana3_1081 0.68 +1.5 1,269,549 + Shewana3_1081 0.87 +1.3 1,269,708 + -0.3 1,269,708 + -0.5 1,269,708 + +0.9 1,270,035 - Shewana3_1082 0.20 -0.9 1,270,078 + Shewana3_1082 0.24 -0.5 1,270,115 + Shewana3_1082 0.27 +0.3 1,270,231 + Shewana3_1082 0.37 +0.7 1,270,246 + Shewana3_1082 0.38 +0.7 1,270,253 + Shewana3_1082 0.39 +0.7 1,270,597 - Shewana3_1082 0.68 +0.5 1,270,650 + Shewana3_1082 0.73 -0.8
Or see this region's nucleotide sequence