Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1062 and Shewana3_1063 are separated by 704 nucleotides Shewana3_1063 and Shewana3_1064 are separated by 34 nucleotides Shewana3_1064 and Shewana3_1065 overlap by 14 nucleotides
Shewana3_1062: Shewana3_1062 - nucleoside recognition domain-containing protein (RefSeq), at 1,247,092 to 1,248,450
_1062
Shewana3_1063: Shewana3_1063 - hypothetical protein (RefSeq), at 1,249,155 to 1,249,871
_1063
Shewana3_1064: Shewana3_1064 - peptidase U32 (RefSeq), at 1,249,906 to 1,250,823
_1064
Shewana3_1065: Shewana3_1065 - peptidase U32 (RefSeq), at 1,250,810 to 1,251,811
_1065
Position (kb)
1249
1250 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1248.155 kb on + strand, within Shewana3_1062 at 1248.250 kb on - strand, within Shewana3_1062 at 1248.288 kb on - strand, within Shewana3_1062 at 1248.312 kb on - strand, within Shewana3_1062 at 1248.373 kb on - strand at 1248.422 kb on + strand at 1248.453 kb on + strand at 1248.460 kb on + strand at 1248.468 kb on - strand at 1249.105 kb on - strand at 1249.122 kb on + strand at 1249.251 kb on - strand, within Shewana3_1063 at 1249.580 kb on + strand, within Shewana3_1063 at 1249.600 kb on - strand, within Shewana3_1063 at 1249.703 kb on + strand, within Shewana3_1063 at 1249.703 kb on + strand, within Shewana3_1063 at 1249.880 kb on - strand at 1250.032 kb on + strand, within Shewana3_1064 at 1250.250 kb on + strand, within Shewana3_1064 at 1250.258 kb on - strand, within Shewana3_1064 at 1250.348 kb on + strand, within Shewana3_1064 at 1250.356 kb on - strand, within Shewana3_1064 at 1250.356 kb on - strand, within Shewana3_1064 at 1250.356 kb on - strand, within Shewana3_1064 at 1250.358 kb on + strand, within Shewana3_1064 at 1250.358 kb on + strand, within Shewana3_1064 at 1250.358 kb on + strand, within Shewana3_1064 at 1250.358 kb on + strand, within Shewana3_1064 at 1250.366 kb on - strand, within Shewana3_1064 at 1250.366 kb on - strand, within Shewana3_1064 at 1250.833 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 1,248,155 + Shewana3_1062 0.78 -2.1 1,248,250 - Shewana3_1062 0.85 +1.3 1,248,288 - Shewana3_1062 0.88 +0.6 1,248,312 - Shewana3_1062 0.90 -0.1 1,248,373 - +1.1 1,248,422 + -0.6 1,248,453 + +0.0 1,248,460 + -1.5 1,248,468 - +1.7 1,249,105 - -0.1 1,249,122 + -1.2 1,249,251 - Shewana3_1063 0.13 +0.5 1,249,580 + Shewana3_1063 0.59 +0.8 1,249,600 - Shewana3_1063 0.62 +0.8 1,249,703 + Shewana3_1063 0.76 +0.3 1,249,703 + Shewana3_1063 0.76 +1.3 1,249,880 - +0.5 1,250,032 + Shewana3_1064 0.14 -2.0 1,250,250 + Shewana3_1064 0.37 -0.5 1,250,258 - Shewana3_1064 0.38 +0.1 1,250,348 + Shewana3_1064 0.48 -1.2 1,250,356 - Shewana3_1064 0.49 +0.1 1,250,356 - Shewana3_1064 0.49 -2.3 1,250,356 - Shewana3_1064 0.49 -0.6 1,250,358 + Shewana3_1064 0.49 +0.7 1,250,358 + Shewana3_1064 0.49 -0.6 1,250,358 + Shewana3_1064 0.49 -0.6 1,250,358 + Shewana3_1064 0.49 +0.7 1,250,366 - Shewana3_1064 0.50 -2.1 1,250,366 - Shewana3_1064 0.50 +0.1 1,250,833 + +2.0
Or see this region's nucleotide sequence