Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0984 and Shewana3_0985 are separated by 84 nucleotides Shewana3_0985 and Shewana3_0986 are separated by 229 nucleotides Shewana3_0986 and Shewana3_0987 are separated by 95 nucleotides
Shewana3_0984: Shewana3_0984 - hypothetical protein (RefSeq), at 1,155,949 to 1,157,154
_0984
Shewana3_0985: Shewana3_0985 - Ferritin, Dps family protein (RefSeq), at 1,157,239 to 1,157,706
_0985
Shewana3_0986: Shewana3_0986 - hypothetical protein (RefSeq), at 1,157,936 to 1,158,286
_0986
Shewana3_0987: Shewana3_0987 - SSU ribosomal protein S18P alanine acetyltransferase (RefSeq), at 1,158,382 to 1,158,834
_0987
Position (kb)
1157
1158 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1156.268 kb on - strand, within Shewana3_0984 at 1156.300 kb on - strand, within Shewana3_0984 at 1156.340 kb on + strand, within Shewana3_0984 at 1156.404 kb on + strand, within Shewana3_0984 at 1156.414 kb on - strand, within Shewana3_0984 at 1156.424 kb on - strand, within Shewana3_0984 at 1156.494 kb on + strand, within Shewana3_0984 at 1156.581 kb on + strand, within Shewana3_0984 at 1156.594 kb on - strand, within Shewana3_0984 at 1156.717 kb on + strand, within Shewana3_0984 at 1156.759 kb on + strand, within Shewana3_0984 at 1156.906 kb on + strand, within Shewana3_0984 at 1156.914 kb on - strand, within Shewana3_0984 at 1156.966 kb on + strand, within Shewana3_0984 at 1157.093 kb on - strand at 1157.127 kb on - strand at 1157.286 kb on + strand, within Shewana3_0985 at 1157.451 kb on + strand, within Shewana3_0985 at 1157.495 kb on - strand, within Shewana3_0985 at 1157.649 kb on + strand, within Shewana3_0985 at 1158.253 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 1,156,268 - Shewana3_0984 0.26 +0.3 1,156,300 - Shewana3_0984 0.29 +2.5 1,156,340 + Shewana3_0984 0.32 -0.2 1,156,404 + Shewana3_0984 0.38 -0.2 1,156,414 - Shewana3_0984 0.39 -2.8 1,156,424 - Shewana3_0984 0.39 +0.1 1,156,494 + Shewana3_0984 0.45 -3.2 1,156,581 + Shewana3_0984 0.52 -1.8 1,156,594 - Shewana3_0984 0.53 -0.1 1,156,717 + Shewana3_0984 0.64 -0.1 1,156,759 + Shewana3_0984 0.67 -0.8 1,156,906 + Shewana3_0984 0.79 +0.3 1,156,914 - Shewana3_0984 0.80 -1.7 1,156,966 + Shewana3_0984 0.84 -3.0 1,157,093 - -0.8 1,157,127 - -0.1 1,157,286 + Shewana3_0985 0.10 -2.0 1,157,451 + Shewana3_0985 0.45 +0.5 1,157,495 - Shewana3_0985 0.55 -2.9 1,157,649 + Shewana3_0985 0.88 +1.1 1,158,253 - +1.2
Or see this region's nucleotide sequence