Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0962 and Shewana3_0963 are separated by 132 nucleotides Shewana3_0963 and Shewana3_0964 are separated by 124 nucleotides
Shewana3_0962: Shewana3_0962 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 1,129,361 to 1,130,692
_0962
Shewana3_0963: Shewana3_0963 - GCN5-related N-acetyltransferase (RefSeq), at 1,130,825 to 1,131,418
_0963
Shewana3_0964: Shewana3_0964 - peptidase M48, Ste24p (RefSeq), at 1,131,543 to 1,132,352
_0964
Position (kb)
1130
1131
1132 Strain fitness (log2 ratio)
-2
-1
0
1 at 1129.877 kb on + strand, within Shewana3_0962 at 1129.885 kb on - strand, within Shewana3_0962 at 1130.050 kb on - strand, within Shewana3_0962 at 1130.235 kb on - strand, within Shewana3_0962 at 1130.375 kb on + strand, within Shewana3_0962 at 1130.394 kb on - strand, within Shewana3_0962 at 1130.506 kb on - strand, within Shewana3_0962 at 1130.521 kb on - strand, within Shewana3_0962 at 1130.649 kb on + strand at 1130.657 kb on - strand at 1130.664 kb on + strand at 1130.734 kb on + strand at 1130.792 kb on + strand at 1130.792 kb on + strand at 1130.800 kb on - strand at 1130.836 kb on - strand at 1131.185 kb on + strand, within Shewana3_0963 at 1131.205 kb on - strand, within Shewana3_0963 at 1131.213 kb on + strand, within Shewana3_0963 at 1131.379 kb on + strand at 1131.766 kb on + strand, within Shewana3_0964 at 1131.771 kb on + strand, within Shewana3_0964 at 1131.854 kb on + strand, within Shewana3_0964 at 1131.952 kb on + strand, within Shewana3_0964 at 1132.029 kb on + strand, within Shewana3_0964 at 1132.029 kb on + strand, within Shewana3_0964 at 1132.107 kb on + strand, within Shewana3_0964 at 1132.115 kb on - strand, within Shewana3_0964 at 1132.117 kb on + strand, within Shewana3_0964 at 1132.140 kb on - strand, within Shewana3_0964 at 1132.174 kb on + strand, within Shewana3_0964
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 1,129,877 + Shewana3_0962 0.39 +0.9 1,129,885 - Shewana3_0962 0.39 +0.5 1,130,050 - Shewana3_0962 0.52 +0.2 1,130,235 - Shewana3_0962 0.66 +0.8 1,130,375 + Shewana3_0962 0.76 +0.4 1,130,394 - Shewana3_0962 0.78 -1.8 1,130,506 - Shewana3_0962 0.86 -0.9 1,130,521 - Shewana3_0962 0.87 -0.7 1,130,649 + -0.0 1,130,657 - -1.6 1,130,664 + +1.7 1,130,734 + -0.0 1,130,792 + -0.7 1,130,792 + -1.7 1,130,800 - -0.3 1,130,836 - -0.9 1,131,185 + Shewana3_0963 0.61 +1.2 1,131,205 - Shewana3_0963 0.64 -0.4 1,131,213 + Shewana3_0963 0.65 +1.1 1,131,379 + +1.6 1,131,766 + Shewana3_0964 0.28 -0.6 1,131,771 + Shewana3_0964 0.28 -0.3 1,131,854 + Shewana3_0964 0.38 +0.3 1,131,952 + Shewana3_0964 0.50 +0.5 1,132,029 + Shewana3_0964 0.60 -1.0 1,132,029 + Shewana3_0964 0.60 -0.2 1,132,107 + Shewana3_0964 0.70 +0.8 1,132,115 - Shewana3_0964 0.71 +0.2 1,132,117 + Shewana3_0964 0.71 -0.8 1,132,140 - Shewana3_0964 0.74 +0.7 1,132,174 + Shewana3_0964 0.78 +1.7
Or see this region's nucleotide sequence