Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0963

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0962 and Shewana3_0963 are separated by 132 nucleotidesShewana3_0963 and Shewana3_0964 are separated by 124 nucleotides Shewana3_0962: Shewana3_0962 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 1,129,361 to 1,130,692 _0962 Shewana3_0963: Shewana3_0963 - GCN5-related N-acetyltransferase (RefSeq), at 1,130,825 to 1,131,418 _0963 Shewana3_0964: Shewana3_0964 - peptidase M48, Ste24p (RefSeq), at 1,131,543 to 1,132,352 _0964 Position (kb) 1130 1131 1132Strain fitness (log2 ratio) -2 -1 0 1at 1129.877 kb on + strand, within Shewana3_0962at 1129.885 kb on - strand, within Shewana3_0962at 1130.050 kb on - strand, within Shewana3_0962at 1130.235 kb on - strand, within Shewana3_0962at 1130.375 kb on + strand, within Shewana3_0962at 1130.394 kb on - strand, within Shewana3_0962at 1130.506 kb on - strand, within Shewana3_0962at 1130.521 kb on - strand, within Shewana3_0962at 1130.649 kb on + strandat 1130.657 kb on - strandat 1130.664 kb on + strandat 1130.734 kb on + strandat 1130.792 kb on + strandat 1130.792 kb on + strandat 1130.800 kb on - strandat 1130.836 kb on - strandat 1131.185 kb on + strand, within Shewana3_0963at 1131.205 kb on - strand, within Shewana3_0963at 1131.213 kb on + strand, within Shewana3_0963at 1131.379 kb on + strandat 1131.766 kb on + strand, within Shewana3_0964at 1131.771 kb on + strand, within Shewana3_0964at 1131.854 kb on + strand, within Shewana3_0964at 1131.952 kb on + strand, within Shewana3_0964at 1132.029 kb on + strand, within Shewana3_0964at 1132.029 kb on + strand, within Shewana3_0964at 1132.107 kb on + strand, within Shewana3_0964at 1132.115 kb on - strand, within Shewana3_0964at 1132.117 kb on + strand, within Shewana3_0964at 1132.140 kb on - strand, within Shewana3_0964at 1132.174 kb on + strand, within Shewana3_0964

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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1,129,877 + Shewana3_0962 0.39 +0.9
1,129,885 - Shewana3_0962 0.39 +0.5
1,130,050 - Shewana3_0962 0.52 +0.2
1,130,235 - Shewana3_0962 0.66 +0.8
1,130,375 + Shewana3_0962 0.76 +0.4
1,130,394 - Shewana3_0962 0.78 -1.8
1,130,506 - Shewana3_0962 0.86 -0.9
1,130,521 - Shewana3_0962 0.87 -0.7
1,130,649 + -0.0
1,130,657 - -1.6
1,130,664 + +1.7
1,130,734 + -0.0
1,130,792 + -0.7
1,130,792 + -1.7
1,130,800 - -0.3
1,130,836 - -0.9
1,131,185 + Shewana3_0963 0.61 +1.2
1,131,205 - Shewana3_0963 0.64 -0.4
1,131,213 + Shewana3_0963 0.65 +1.1
1,131,379 + +1.6
1,131,766 + Shewana3_0964 0.28 -0.6
1,131,771 + Shewana3_0964 0.28 -0.3
1,131,854 + Shewana3_0964 0.38 +0.3
1,131,952 + Shewana3_0964 0.50 +0.5
1,132,029 + Shewana3_0964 0.60 -1.0
1,132,029 + Shewana3_0964 0.60 -0.2
1,132,107 + Shewana3_0964 0.70 +0.8
1,132,115 - Shewana3_0964 0.71 +0.2
1,132,117 + Shewana3_0964 0.71 -0.8
1,132,140 - Shewana3_0964 0.74 +0.7
1,132,174 + Shewana3_0964 0.78 +1.7

Or see this region's nucleotide sequence