Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0944 and Shewana3_0945 are separated by 11 nucleotides Shewana3_0945 and Shewana3_0946 are separated by 238 nucleotides Shewana3_0946 and Shewana3_0947 are separated by 9 nucleotides Shewana3_0947 and Shewana3_0948 are separated by 299 nucleotides
Shewana3_0944: Shewana3_0944 - ApbE family lipoprotein (RefSeq), at 1,105,032 to 1,106,156
_0944
Shewana3_0945: Shewana3_0945 - hypothetical protein (RefSeq), at 1,106,168 to 1,106,392
_0945
Shewana3_0946: Shewana3_0946 - bacterioferritin (RefSeq), at 1,106,631 to 1,107,104
_0946
Shewana3_0947: Shewana3_0947 - bacterioferritin (RefSeq), at 1,107,114 to 1,107,581
_0947
Shewana3_0948: Shewana3_0948 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,107,881 to 1,109,884
_0948
Position (kb)
1107
1108 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1106.135 kb on + strand at 1106.160 kb on + strand at 1106.884 kb on - strand, within Shewana3_0946 at 1106.941 kb on + strand, within Shewana3_0946 at 1106.941 kb on + strand, within Shewana3_0946 at 1106.941 kb on + strand, within Shewana3_0946 at 1106.941 kb on + strand, within Shewana3_0946 at 1106.949 kb on - strand, within Shewana3_0946 at 1107.180 kb on + strand, within Shewana3_0947 at 1107.331 kb on + strand, within Shewana3_0947 at 1107.402 kb on - strand, within Shewana3_0947 at 1107.536 kb on + strand at 1107.584 kb on + strand at 1107.584 kb on - strand at 1107.668 kb on - strand at 1107.996 kb on + strand at 1108.300 kb on + strand, within Shewana3_0948 at 1108.308 kb on - strand, within Shewana3_0948 at 1108.446 kb on + strand, within Shewana3_0948
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 1,106,135 + -1.9 1,106,160 + -2.0 1,106,884 - Shewana3_0946 0.53 -1.8 1,106,941 + Shewana3_0946 0.65 -1.7 1,106,941 + Shewana3_0946 0.65 -1.8 1,106,941 + Shewana3_0946 0.65 +0.8 1,106,941 + Shewana3_0946 0.65 +1.3 1,106,949 - Shewana3_0946 0.67 -2.2 1,107,180 + Shewana3_0947 0.14 -2.8 1,107,331 + Shewana3_0947 0.46 -2.0 1,107,402 - Shewana3_0947 0.62 -2.5 1,107,536 + +1.3 1,107,584 + +0.7 1,107,584 - +1.5 1,107,668 - +1.1 1,107,996 + -0.4 1,108,300 + Shewana3_0948 0.21 +0.4 1,108,308 - Shewana3_0948 0.21 -1.7 1,108,446 + Shewana3_0948 0.28 -2.1
Or see this region's nucleotide sequence