Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0821 and Shewana3_0822 are separated by 25 nucleotides Shewana3_0822 and Shewana3_0823 are separated by 231 nucleotides Shewana3_0823 and Shewana3_0824 are separated by 53 nucleotides
Shewana3_0821: Shewana3_0821 - phosphate transporter (RefSeq), at 951,807 to 953,096
_0821
Shewana3_0822: Shewana3_0822 - hypothetical protein (RefSeq), at 953,122 to 953,802
_0822
Shewana3_0823: Shewana3_0823 - adenylate cyclase (RefSeq), at 954,034 to 955,545
_0823
Shewana3_0824: Shewana3_0824 - Ion transport 2 domain-containing protein (RefSeq), at 955,599 to 956,423
_0824
Position (kb) 954
955
956 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 953.191 kb on - strand, within Shewana3_0822 at 953.358 kb on - strand, within Shewana3_0822 at 953.857 kb on - strand at 954.170 kb on + strand at 954.197 kb on + strand, within Shewana3_0823 at 954.205 kb on - strand, within Shewana3_0823 at 954.205 kb on - strand, within Shewana3_0823 at 954.244 kb on - strand, within Shewana3_0823 at 954.379 kb on + strand, within Shewana3_0823 at 954.431 kb on - strand, within Shewana3_0823 at 954.433 kb on + strand, within Shewana3_0823 at 954.492 kb on + strand, within Shewana3_0823 at 954.603 kb on - strand, within Shewana3_0823 at 954.608 kb on - strand, within Shewana3_0823 at 954.653 kb on + strand, within Shewana3_0823 at 954.653 kb on + strand, within Shewana3_0823 at 954.661 kb on - strand, within Shewana3_0823 at 954.701 kb on + strand, within Shewana3_0823 at 954.739 kb on + strand, within Shewana3_0823 at 955.021 kb on + strand, within Shewana3_0823 at 955.094 kb on + strand, within Shewana3_0823 at 955.157 kb on + strand, within Shewana3_0823 at 955.222 kb on - strand, within Shewana3_0823 at 955.254 kb on + strand, within Shewana3_0823 at 955.296 kb on - strand, within Shewana3_0823 at 955.329 kb on - strand, within Shewana3_0823 at 955.432 kb on + strand at 955.463 kb on + strand at 955.463 kb on + strand at 955.471 kb on - strand at 955.477 kb on + strand at 955.746 kb on + strand, within Shewana3_0824 at 956.009 kb on - strand, within Shewana3_0824 at 956.024 kb on + strand, within Shewana3_0824 at 956.134 kb on - strand, within Shewana3_0824 at 956.306 kb on + strand, within Shewana3_0824 at 956.306 kb on + strand, within Shewana3_0824 at 956.402 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 953,191 - Shewana3_0822 0.10 -0.8 953,358 - Shewana3_0822 0.35 +1.6 953,857 - -3.5 954,170 + -1.8 954,197 + Shewana3_0823 0.11 -1.0 954,205 - Shewana3_0823 0.11 -2.9 954,205 - Shewana3_0823 0.11 -1.1 954,244 - Shewana3_0823 0.14 -1.8 954,379 + Shewana3_0823 0.23 -2.3 954,431 - Shewana3_0823 0.26 -3.0 954,433 + Shewana3_0823 0.26 -3.4 954,492 + Shewana3_0823 0.30 -1.3 954,603 - Shewana3_0823 0.38 -2.2 954,608 - Shewana3_0823 0.38 -2.6 954,653 + Shewana3_0823 0.41 -4.7 954,653 + Shewana3_0823 0.41 -2.8 954,661 - Shewana3_0823 0.41 -3.5 954,701 + Shewana3_0823 0.44 -3.4 954,739 + Shewana3_0823 0.47 -0.6 955,021 + Shewana3_0823 0.65 -3.3 955,094 + Shewana3_0823 0.70 -1.8 955,157 + Shewana3_0823 0.74 +0.4 955,222 - Shewana3_0823 0.79 -1.7 955,254 + Shewana3_0823 0.81 -0.1 955,296 - Shewana3_0823 0.83 -2.0 955,329 - Shewana3_0823 0.86 +1.1 955,432 + -0.8 955,463 + +0.3 955,463 + +1.8 955,471 - +0.8 955,477 + +1.2 955,746 + Shewana3_0824 0.18 +1.3 956,009 - Shewana3_0824 0.50 +0.1 956,024 + Shewana3_0824 0.52 -0.4 956,134 - Shewana3_0824 0.65 -1.1 956,306 + Shewana3_0824 0.86 -1.1 956,306 + Shewana3_0824 0.86 -2.2 956,402 + +1.1
Or see this region's nucleotide sequence