Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0697 and Shewana3_0698 are separated by 0 nucleotides Shewana3_0698 and Shewana3_0699 are separated by 69 nucleotides
Shewana3_0697: Shewana3_0697 - RNAse R (RefSeq), at 812,472 to 814,901
_0697
Shewana3_0698: Shewana3_0698 - 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq), at 814,902 to 815,642
_0698
Shewana3_0699: Shewana3_0699 - major facilitator transporter (RefSeq), at 815,712 to 817,136
_0699
Position (kb) 814
815
816 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 813.947 kb on - strand, within Shewana3_0697 at 814.539 kb on + strand, within Shewana3_0697 at 814.560 kb on + strand, within Shewana3_0697 at 814.678 kb on - strand at 814.814 kb on + strand at 814.960 kb on + strand at 814.989 kb on + strand, within Shewana3_0698 at 815.034 kb on + strand, within Shewana3_0698 at 815.041 kb on - strand, within Shewana3_0698 at 815.076 kb on + strand, within Shewana3_0698 at 815.098 kb on + strand, within Shewana3_0698 at 815.508 kb on + strand, within Shewana3_0698 at 815.508 kb on + strand, within Shewana3_0698 at 815.744 kb on + strand at 815.982 kb on - strand, within Shewana3_0699 at 816.075 kb on - strand, within Shewana3_0699 at 816.109 kb on - strand, within Shewana3_0699 at 816.110 kb on - strand, within Shewana3_0699 at 816.527 kb on + strand, within Shewana3_0699 at 816.617 kb on + strand, within Shewana3_0699
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 813,947 - Shewana3_0697 0.61 -1.4 814,539 + Shewana3_0697 0.85 -1.0 814,560 + Shewana3_0697 0.86 +1.0 814,678 - -3.4 814,814 + +0.1 814,960 + -1.8 814,989 + Shewana3_0698 0.12 -1.8 815,034 + Shewana3_0698 0.18 -2.4 815,041 - Shewana3_0698 0.19 -1.8 815,076 + Shewana3_0698 0.23 -4.3 815,098 + Shewana3_0698 0.26 -2.4 815,508 + Shewana3_0698 0.82 -3.8 815,508 + Shewana3_0698 0.82 -3.4 815,744 + -0.2 815,982 - Shewana3_0699 0.19 -2.1 816,075 - Shewana3_0699 0.25 -0.8 816,109 - Shewana3_0699 0.28 -0.7 816,110 - Shewana3_0699 0.28 +1.4 816,527 + Shewana3_0699 0.57 -0.0 816,617 + Shewana3_0699 0.64 +0.9
Or see this region's nucleotide sequence