Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0687 and Shewana3_0688 are separated by 33 nucleotides Shewana3_0688 and Shewana3_0689 are separated by 165 nucleotides Shewana3_0689 and Shewana3_0690 are separated by 125 nucleotides
Shewana3_0687: Shewana3_0687 - hypothetical protein (RefSeq), at 803,698 to 804,102
_0687
Shewana3_0688: Shewana3_0688 - hypothetical protein (RefSeq), at 804,136 to 804,576
_0688
Shewana3_0689: Shewana3_0689 - DegS serine peptidase (RefSeq), at 804,742 to 805,824
_0689
Shewana3_0690: Shewana3_0690 - peptidase Do (RefSeq), at 805,950 to 807,302
_0690
Position (kb) 804
805
806 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 803.871 kb on - strand, within Shewana3_0687 at 803.907 kb on + strand, within Shewana3_0687 at 803.957 kb on + strand, within Shewana3_0687 at 803.965 kb on - strand, within Shewana3_0687 at 804.105 kb on - strand at 804.178 kb on + strand at 804.325 kb on - strand, within Shewana3_0688 at 804.358 kb on + strand, within Shewana3_0688 at 804.366 kb on - strand, within Shewana3_0688 at 804.505 kb on + strand, within Shewana3_0688 at 804.694 kb on + strand at 804.702 kb on - strand at 804.721 kb on + strand at 804.792 kb on - strand at 804.995 kb on - strand, within Shewana3_0689 at 805.051 kb on + strand, within Shewana3_0689 at 805.085 kb on - strand, within Shewana3_0689 at 805.897 kb on + strand at 806.030 kb on - strand at 806.113 kb on + strand at 806.121 kb on - strand, within Shewana3_0690 at 806.521 kb on - strand, within Shewana3_0690 at 806.753 kb on + strand, within Shewana3_0690
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 803,871 - Shewana3_0687 0.43 -0.1 803,907 + Shewana3_0687 0.52 +0.5 803,957 + Shewana3_0687 0.64 +1.0 803,965 - Shewana3_0687 0.66 +0.2 804,105 - -2.3 804,178 + +0.1 804,325 - Shewana3_0688 0.43 +2.0 804,358 + Shewana3_0688 0.50 -1.6 804,366 - Shewana3_0688 0.52 -0.5 804,505 + Shewana3_0688 0.84 +0.1 804,694 + +0.3 804,702 - +1.2 804,721 + -1.5 804,792 - -2.8 804,995 - Shewana3_0689 0.23 -2.9 805,051 + Shewana3_0689 0.29 +0.6 805,085 - Shewana3_0689 0.32 -1.7 805,897 + -0.7 806,030 - +1.0 806,113 + +0.7 806,121 - Shewana3_0690 0.13 -4.2 806,521 - Shewana3_0690 0.42 -1.5 806,753 + Shewana3_0690 0.59 +0.1
Or see this region's nucleotide sequence