Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0539 and Shewana3_0540 are separated by 280 nucleotides Shewana3_0540 and Shewana3_0541 are separated by 104 nucleotides Shewana3_0541 and Shewana3_0542 are separated by 315 nucleotides
Shewana3_0539: Shewana3_0539 - hypothetical protein (RefSeq), at 633,170 to 634,525
_0539
Shewana3_0540: Shewana3_0540 - hypothetical protein (RefSeq), at 634,806 to 635,768
_0540
Shewana3_0541: Shewana3_0541 - hypothetical protein (RefSeq), at 635,873 to 636,049
_0541
Shewana3_0542: Shewana3_0542 - multi-sensor signal transduction histidine kinase (RefSeq), at 636,365 to 638,524
_0542
Position (kb) 634
635
636 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 633.846 kb on - strand, within Shewana3_0539 at 633.896 kb on - strand, within Shewana3_0539 at 633.925 kb on - strand, within Shewana3_0539 at 634.078 kb on + strand, within Shewana3_0539 at 634.105 kb on + strand, within Shewana3_0539 at 634.113 kb on - strand, within Shewana3_0539 at 634.154 kb on - strand, within Shewana3_0539 at 634.156 kb on - strand, within Shewana3_0539 at 634.204 kb on - strand, within Shewana3_0539 at 634.609 kb on - strand at 635.285 kb on + strand, within Shewana3_0540 at 635.354 kb on + strand, within Shewana3_0540 at 635.667 kb on - strand, within Shewana3_0540 at 635.854 kb on + strand at 635.879 kb on - strand at 635.952 kb on + strand, within Shewana3_0541 at 636.221 kb on - strand at 636.370 kb on - strand at 636.481 kb on + strand at 636.489 kb on - strand at 636.489 kb on - strand at 636.491 kb on - strand at 636.712 kb on - strand, within Shewana3_0542 at 636.761 kb on + strand, within Shewana3_0542
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 633,846 - Shewana3_0539 0.50 +1.6 633,896 - Shewana3_0539 0.54 -0.3 633,925 - Shewana3_0539 0.56 -0.1 634,078 + Shewana3_0539 0.67 -0.6 634,105 + Shewana3_0539 0.69 -0.6 634,113 - Shewana3_0539 0.70 +2.0 634,154 - Shewana3_0539 0.73 -1.5 634,156 - Shewana3_0539 0.73 +0.4 634,204 - Shewana3_0539 0.76 -3.3 634,609 - +0.8 635,285 + Shewana3_0540 0.50 +0.6 635,354 + Shewana3_0540 0.57 +0.1 635,667 - Shewana3_0540 0.89 -0.1 635,854 + +0.6 635,879 - +0.5 635,952 + Shewana3_0541 0.45 -0.9 636,221 - -0.5 636,370 - -0.1 636,481 + -1.3 636,489 - +0.6 636,489 - -0.7 636,491 - +0.3 636,712 - Shewana3_0542 0.16 +0.9 636,761 + Shewana3_0542 0.18 +0.1
Or see this region's nucleotide sequence