Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0457 and Shewana3_0458 are separated by 493 nucleotides Shewana3_0458 and Shewana3_0459 are separated by 300 nucleotides Shewana3_0459 and Shewana3_0460 are separated by 193 nucleotides Shewana3_0460 and Shewana3_0461 are separated by 11 nucleotides Shewana3_0461 and Shewana3_0462 are separated by 47 nucleotides
Shewana3_0457: Shewana3_0457 - response regulator receiver protein (RefSeq), at 532,535 to 533,491
_0457
Shewana3_0458: Shewana3_0458 - hypothetical protein (RefSeq), at 533,985 to 534,119
_0458
Shewana3_0459: Shewana3_0459 - protein of unknown function DUF853, NPT hydrolase putative (RefSeq), at 534,420 to 535,913
_0459
Shewana3_0460: Shewana3_0460 - hypothetical protein (RefSeq), at 536,107 to 536,340
_0460
Shewana3_0461: Shewana3_0461 - hypothetical protein (RefSeq), at 536,352 to 536,777
_0461
Shewana3_0462: Shewana3_0462 - protein of unknown function, zinc metallopeptidase putative (RefSeq), at 536,825 to 537,703
_0462
Position (kb) 534
535
536 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 533.431 kb on - strand at 533.446 kb on + strand at 533.455 kb on - strand at 533.524 kb on - strand at 533.664 kb on - strand at 534.175 kb on + strand at 534.287 kb on - strand at 534.320 kb on - strand at 534.404 kb on + strand at 534.412 kb on - strand at 534.412 kb on - strand at 534.412 kb on - strand at 534.416 kb on + strand at 534.490 kb on + strand at 534.525 kb on + strand at 534.573 kb on + strand, within Shewana3_0459 at 534.633 kb on + strand, within Shewana3_0459 at 534.748 kb on - strand, within Shewana3_0459 at 534.967 kb on + strand, within Shewana3_0459 at 534.988 kb on - strand, within Shewana3_0459 at 535.232 kb on + strand, within Shewana3_0459 at 535.443 kb on + strand, within Shewana3_0459 at 535.479 kb on + strand, within Shewana3_0459 at 535.502 kb on + strand, within Shewana3_0459 at 535.746 kb on - strand, within Shewana3_0459 at 535.907 kb on - strand at 535.961 kb on + strand at 535.969 kb on - strand at 535.969 kb on - strand at 536.050 kb on - strand at 536.051 kb on - strand at 536.056 kb on - strand at 536.154 kb on - strand, within Shewana3_0460 at 536.245 kb on + strand, within Shewana3_0460 at 536.253 kb on - strand, within Shewana3_0460 at 536.253 kb on - strand, within Shewana3_0460 at 536.316 kb on - strand, within Shewana3_0460 at 536.351 kb on + strand at 536.375 kb on + strand at 536.414 kb on - strand, within Shewana3_0461 at 536.813 kb on - strand at 536.881 kb on + strand at 536.881 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 533,431 - -0.5 533,446 + -0.5 533,455 - +0.1 533,524 - -1.3 533,664 - -0.2 534,175 + +0.1 534,287 - -0.2 534,320 - +1.0 534,404 + +0.2 534,412 - +0.2 534,412 - -0.0 534,412 - +0.3 534,416 + -0.3 534,490 + -3.7 534,525 + +1.4 534,573 + Shewana3_0459 0.10 +1.1 534,633 + Shewana3_0459 0.14 +0.3 534,748 - Shewana3_0459 0.22 -0.1 534,967 + Shewana3_0459 0.37 -0.8 534,988 - Shewana3_0459 0.38 +0.5 535,232 + Shewana3_0459 0.54 -0.1 535,443 + Shewana3_0459 0.68 +1.5 535,479 + Shewana3_0459 0.71 +2.3 535,502 + Shewana3_0459 0.72 -0.2 535,746 - Shewana3_0459 0.89 +0.3 535,907 - -0.2 535,961 + +0.0 535,969 - -0.6 535,969 - -0.8 536,050 - -1.1 536,051 - +0.2 536,056 - +1.7 536,154 - Shewana3_0460 0.20 +0.5 536,245 + Shewana3_0460 0.59 -0.4 536,253 - Shewana3_0460 0.62 +1.6 536,253 - Shewana3_0460 0.62 -0.2 536,316 - Shewana3_0460 0.89 -0.1 536,351 + -1.2 536,375 + -0.3 536,414 - Shewana3_0461 0.15 +0.0 536,813 - +0.2 536,881 + +0.2 536,881 - -0.1
Or see this region's nucleotide sequence