Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0140 and Shewana3_0141 are separated by 130 nucleotides Shewana3_0141 and Shewana3_0142 are separated by 263 nucleotides
Shewana3_0140: Shewana3_0140 - peptidase M14, carboxypeptidase A (RefSeq), at 159,615 to 161,594
_0140
Shewana3_0141: Shewana3_0141 - hypothetical protein (RefSeq), at 161,725 to 162,843
_0141
Shewana3_0142: Shewana3_0142 - sodium:dicarboxylate symporter (RefSeq), at 163,107 to 164,336
_0142
Position (kb) 161
162
163 Strain fitness (log2 ratio) -1
0
1
2 at 160.751 kb on + strand, within Shewana3_0140 at 161.219 kb on + strand, within Shewana3_0140 at 161.286 kb on + strand, within Shewana3_0140 at 161.433 kb on + strand at 161.433 kb on + strand at 161.493 kb on - strand at 161.678 kb on - strand at 161.726 kb on + strand at 161.795 kb on + strand at 161.847 kb on - strand, within Shewana3_0141 at 161.938 kb on + strand, within Shewana3_0141 at 162.327 kb on + strand, within Shewana3_0141 at 162.426 kb on + strand, within Shewana3_0141 at 162.426 kb on + strand, within Shewana3_0141 at 162.426 kb on + strand, within Shewana3_0141 at 162.434 kb on - strand, within Shewana3_0141 at 162.434 kb on - strand, within Shewana3_0141 at 162.526 kb on - strand, within Shewana3_0141 at 162.589 kb on + strand, within Shewana3_0141 at 162.855 kb on + strand at 162.863 kb on - strand at 162.863 kb on - strand at 162.863 kb on - strand at 162.874 kb on - strand at 162.955 kb on + strand at 162.959 kb on + strand at 162.960 kb on + strand at 163.037 kb on + strand at 163.073 kb on + strand at 163.214 kb on - strand at 163.366 kb on + strand, within Shewana3_0142 at 163.374 kb on - strand, within Shewana3_0142 at 163.456 kb on - strand, within Shewana3_0142 at 163.532 kb on - strand, within Shewana3_0142 at 163.690 kb on - strand, within Shewana3_0142 at 163.754 kb on + strand, within Shewana3_0142 at 163.831 kb on + strand, within Shewana3_0142 at 163.831 kb on + strand, within Shewana3_0142 at 163.831 kb on + strand, within Shewana3_0142 at 163.839 kb on - strand, within Shewana3_0142 at 163.839 kb on - strand, within Shewana3_0142 at 163.839 kb on - strand, within Shewana3_0142 at 163.842 kb on + strand, within Shewana3_0142
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 160,751 + Shewana3_0140 0.57 -0.1 161,219 + Shewana3_0140 0.81 -1.3 161,286 + Shewana3_0140 0.84 +0.1 161,433 + -0.5 161,433 + -1.0 161,493 - -0.2 161,678 - +0.1 161,726 + -1.3 161,795 + +0.3 161,847 - Shewana3_0141 0.11 +0.2 161,938 + Shewana3_0141 0.19 +1.1 162,327 + Shewana3_0141 0.54 +1.4 162,426 + Shewana3_0141 0.63 -0.6 162,426 + Shewana3_0141 0.63 +1.0 162,426 + Shewana3_0141 0.63 +1.4 162,434 - Shewana3_0141 0.63 -1.3 162,434 - Shewana3_0141 0.63 +1.3 162,526 - Shewana3_0141 0.72 -1.6 162,589 + Shewana3_0141 0.77 +0.6 162,855 + +0.2 162,863 - +0.6 162,863 - -0.4 162,863 - +0.1 162,874 - -0.0 162,955 + -0.2 162,959 + +0.4 162,960 + -0.2 163,037 + -0.8 163,073 + +1.8 163,214 - +0.2 163,366 + Shewana3_0142 0.21 -0.0 163,374 - Shewana3_0142 0.22 -0.6 163,456 - Shewana3_0142 0.28 -0.4 163,532 - Shewana3_0142 0.35 -0.7 163,690 - Shewana3_0142 0.47 +0.1 163,754 + Shewana3_0142 0.53 -0.4 163,831 + Shewana3_0142 0.59 +0.9 163,831 + Shewana3_0142 0.59 -0.8 163,831 + Shewana3_0142 0.59 +1.1 163,839 - Shewana3_0142 0.60 -0.9 163,839 - Shewana3_0142 0.60 +0.0 163,839 - Shewana3_0142 0.60 +0.7 163,842 + Shewana3_0142 0.60 +0.0
Or see this region's nucleotide sequence