Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4316 and Shewana3_4317 are separated by 204 nucleotides Shewana3_4317 and Shewana3_4318 are separated by 113 nucleotides
Shewana3_4316: Shewana3_4316 - phage integrase family protein (RefSeq), at 203,946 to 204,968
_4316
Shewana3_4317: Shewana3_4317 - chromosome segregation ATPases-like protein (RefSeq), at 205,173 to 206,222
_4317
Shewana3_4318: Shewana3_4318 - transposase Tn3 family protein (RefSeq), at 206,336 to 209,230
_4318
Position (kb) 205
206
207 Strain fitness (log2 ratio) -2
-1
0
1
2 at 204.252 kb on - strand, within Shewana3_4316 at 204.257 kb on + strand, within Shewana3_4316 at 204.328 kb on + strand, within Shewana3_4316 at 204.440 kb on - strand, within Shewana3_4316 at 204.672 kb on - strand, within Shewana3_4316 at 204.677 kb on - strand, within Shewana3_4316 at 204.711 kb on + strand, within Shewana3_4316 at 204.716 kb on + strand, within Shewana3_4316 at 204.716 kb on + strand, within Shewana3_4316 at 204.724 kb on + strand, within Shewana3_4316 at 204.842 kb on - strand, within Shewana3_4316 at 205.237 kb on + strand at 205.269 kb on + strand at 205.277 kb on - strand at 205.379 kb on + strand, within Shewana3_4317 at 205.521 kb on + strand, within Shewana3_4317 at 205.521 kb on - strand, within Shewana3_4317 at 205.569 kb on + strand, within Shewana3_4317 at 205.569 kb on + strand, within Shewana3_4317 at 205.709 kb on + strand, within Shewana3_4317 at 205.828 kb on - strand, within Shewana3_4317 at 205.831 kb on + strand, within Shewana3_4317 at 205.848 kb on - strand, within Shewana3_4317 at 205.906 kb on - strand, within Shewana3_4317 at 205.916 kb on - strand, within Shewana3_4317 at 205.952 kb on + strand, within Shewana3_4317 at 206.032 kb on - strand, within Shewana3_4317 at 206.134 kb on - strand at 206.404 kb on + strand at 206.562 kb on - strand at 206.562 kb on - strand at 206.631 kb on + strand, within Shewana3_4318 at 206.636 kb on + strand, within Shewana3_4318 at 206.644 kb on - strand, within Shewana3_4318 at 206.658 kb on + strand, within Shewana3_4318 at 206.659 kb on - strand, within Shewana3_4318 at 206.707 kb on - strand, within Shewana3_4318 at 206.954 kb on - strand, within Shewana3_4318 at 207.013 kb on - strand, within Shewana3_4318 at 207.048 kb on + strand, within Shewana3_4318 at 207.160 kb on + strand, within Shewana3_4318
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 204,252 - Shewana3_4316 0.30 +0.3 204,257 + Shewana3_4316 0.30 +0.3 204,328 + Shewana3_4316 0.37 -0.6 204,440 - Shewana3_4316 0.48 -0.2 204,672 - Shewana3_4316 0.71 -0.4 204,677 - Shewana3_4316 0.71 +0.7 204,711 + Shewana3_4316 0.75 -0.2 204,716 + Shewana3_4316 0.75 -1.0 204,716 + Shewana3_4316 0.75 +0.4 204,724 + Shewana3_4316 0.76 -0.1 204,842 - Shewana3_4316 0.88 +0.1 205,237 + +1.6 205,269 + -0.4 205,277 - +0.0 205,379 + Shewana3_4317 0.20 +0.5 205,521 + Shewana3_4317 0.33 -1.3 205,521 - Shewana3_4317 0.33 +0.7 205,569 + Shewana3_4317 0.38 +1.0 205,569 + Shewana3_4317 0.38 +0.4 205,709 + Shewana3_4317 0.51 +0.7 205,828 - Shewana3_4317 0.62 +1.8 205,831 + Shewana3_4317 0.63 +1.9 205,848 - Shewana3_4317 0.64 +0.5 205,906 - Shewana3_4317 0.70 -2.7 205,916 - Shewana3_4317 0.71 -1.2 205,952 + Shewana3_4317 0.74 +0.1 206,032 - Shewana3_4317 0.82 -1.2 206,134 - -1.9 206,404 + -0.2 206,562 - -0.4 206,562 - +0.2 206,631 + Shewana3_4318 0.10 -0.8 206,636 + Shewana3_4318 0.10 +0.6 206,644 - Shewana3_4318 0.11 -0.4 206,658 + Shewana3_4318 0.11 +0.5 206,659 - Shewana3_4318 0.11 -0.6 206,707 - Shewana3_4318 0.13 +0.4 206,954 - Shewana3_4318 0.21 +0.2 207,013 - Shewana3_4318 0.23 +0.0 207,048 + Shewana3_4318 0.25 +0.9 207,160 + Shewana3_4318 0.28 -0.0
Or see this region's nucleotide sequence