Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4213

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4211 and Shewana3_4212 overlap by 4 nucleotidesShewana3_4212 and Shewana3_4213 are separated by 135 nucleotidesShewana3_4213 and Shewana3_4214 are separated by 185 nucleotides Shewana3_4211: Shewana3_4211 - hypothetical protein (RefSeq), at 79,152 to 79,604 _4211 Shewana3_4212: Shewana3_4212 - hypothetical protein (RefSeq), at 79,601 to 80,062 _4212 Shewana3_4213: Shewana3_4213 - hypothetical protein (RefSeq), at 80,198 to 84,442 _4213 Shewana3_4214: Shewana3_4214 - hypothetical protein (RefSeq), at 84,628 to 85,533 _4214 Position (kb) 80 81 82 83 84 85Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 79.282 kb on - strand, within Shewana3_4211at 79.499 kb on - strand, within Shewana3_4211at 79.499 kb on - strand, within Shewana3_4211at 79.499 kb on - strand, within Shewana3_4211at 79.612 kb on - strandat 79.614 kb on - strandat 80.251 kb on - strandat 80.379 kb on - strandat 80.381 kb on + strandat 80.476 kb on + strandat 80.519 kb on + strandat 80.527 kb on - strandat 80.689 kb on - strand, within Shewana3_4213at 80.848 kb on + strand, within Shewana3_4213at 80.848 kb on + strand, within Shewana3_4213at 80.856 kb on - strand, within Shewana3_4213at 80.856 kb on - strand, within Shewana3_4213at 80.890 kb on + strand, within Shewana3_4213at 80.958 kb on - strand, within Shewana3_4213at 81.005 kb on - strand, within Shewana3_4213at 81.125 kb on + strand, within Shewana3_4213at 81.287 kb on - strand, within Shewana3_4213at 81.305 kb on - strand, within Shewana3_4213at 81.439 kb on - strand, within Shewana3_4213at 81.569 kb on + strand, within Shewana3_4213at 81.606 kb on - strand, within Shewana3_4213at 81.829 kb on + strand, within Shewana3_4213at 81.860 kb on - strand, within Shewana3_4213at 81.925 kb on - strand, within Shewana3_4213at 81.994 kb on - strand, within Shewana3_4213at 81.999 kb on + strand, within Shewana3_4213at 82.127 kb on + strand, within Shewana3_4213at 82.217 kb on + strand, within Shewana3_4213at 82.233 kb on + strand, within Shewana3_4213at 82.248 kb on - strand, within Shewana3_4213at 82.315 kb on - strand, within Shewana3_4213at 82.377 kb on + strand, within Shewana3_4213at 82.385 kb on - strand, within Shewana3_4213at 82.391 kb on - strand, within Shewana3_4213at 82.401 kb on - strand, within Shewana3_4213at 82.439 kb on + strand, within Shewana3_4213at 82.588 kb on + strand, within Shewana3_4213at 82.689 kb on + strand, within Shewana3_4213at 83.035 kb on - strand, within Shewana3_4213at 83.087 kb on + strand, within Shewana3_4213at 83.362 kb on + strand, within Shewana3_4213at 83.370 kb on - strand, within Shewana3_4213at 83.757 kb on + strand, within Shewana3_4213at 83.877 kb on - strand, within Shewana3_4213at 83.929 kb on + strand, within Shewana3_4213at 84.168 kb on - strandat 84.235 kb on - strandat 84.396 kb on + strandat 84.396 kb on + strandat 84.396 kb on + strandat 84.404 kb on - strandat 84.475 kb on - strandat 84.761 kb on - strand, within Shewana3_4214at 84.815 kb on - strand, within Shewana3_4214at 84.817 kb on + strand, within Shewana3_4214at 84.835 kb on - strand, within Shewana3_4214at 84.835 kb on - strand, within Shewana3_4214at 85.001 kb on + strand, within Shewana3_4214at 85.009 kb on - strand, within Shewana3_4214at 85.050 kb on + strand, within Shewana3_4214at 85.104 kb on - strand, within Shewana3_4214at 85.104 kb on - strand, within Shewana3_4214at 85.106 kb on + strand, within Shewana3_4214at 85.106 kb on + strand, within Shewana3_4214at 85.114 kb on - strand, within Shewana3_4214at 85.183 kb on + strand, within Shewana3_4214at 85.430 kb on + strand, within Shewana3_4214at 85.438 kb on - strand, within Shewana3_4214

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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79,282 - Shewana3_4211 0.29 +0.5
79,499 - Shewana3_4211 0.77 +0.2
79,499 - Shewana3_4211 0.77 +0.2
79,499 - Shewana3_4211 0.77 +0.9
79,612 - +0.0
79,614 - -0.4
80,251 - +0.2
80,379 - +1.0
80,381 + -2.0
80,476 + +0.2
80,519 + -0.7
80,527 - -0.0
80,689 - Shewana3_4213 0.12 +0.6
80,848 + Shewana3_4213 0.15 +0.4
80,848 + Shewana3_4213 0.15 +0.7
80,856 - Shewana3_4213 0.16 -0.7
80,856 - Shewana3_4213 0.16 +0.6
80,890 + Shewana3_4213 0.16 +1.6
80,958 - Shewana3_4213 0.18 -0.1
81,005 - Shewana3_4213 0.19 -0.5
81,125 + Shewana3_4213 0.22 -1.3
81,287 - Shewana3_4213 0.26 -0.0
81,305 - Shewana3_4213 0.26 -0.2
81,439 - Shewana3_4213 0.29 -0.7
81,569 + Shewana3_4213 0.32 -1.4
81,606 - Shewana3_4213 0.33 -2.0
81,829 + Shewana3_4213 0.38 -2.0
81,860 - Shewana3_4213 0.39 -0.2
81,925 - Shewana3_4213 0.41 +2.2
81,994 - Shewana3_4213 0.42 -0.3
81,999 + Shewana3_4213 0.42 +1.4
82,127 + Shewana3_4213 0.45 -0.6
82,217 + Shewana3_4213 0.48 -1.5
82,233 + Shewana3_4213 0.48 +1.1
82,248 - Shewana3_4213 0.48 +0.3
82,315 - Shewana3_4213 0.50 +1.2
82,377 + Shewana3_4213 0.51 +1.7
82,385 - Shewana3_4213 0.52 +0.8
82,391 - Shewana3_4213 0.52 +0.8
82,401 - Shewana3_4213 0.52 +0.4
82,439 + Shewana3_4213 0.53 +0.3
82,588 + Shewana3_4213 0.56 -1.2
82,689 + Shewana3_4213 0.59 +0.1
83,035 - Shewana3_4213 0.67 +1.8
83,087 + Shewana3_4213 0.68 -0.2
83,362 + Shewana3_4213 0.75 +0.4
83,370 - Shewana3_4213 0.75 -0.2
83,757 + Shewana3_4213 0.84 -0.8
83,877 - Shewana3_4213 0.87 +0.0
83,929 + Shewana3_4213 0.88 +0.2
84,168 - +1.4
84,235 - -3.6
84,396 + -0.1
84,396 + +0.5
84,396 + -0.4
84,404 - +1.2
84,475 - +1.3
84,761 - Shewana3_4214 0.15 -0.6
84,815 - Shewana3_4214 0.21 -1.1
84,817 + Shewana3_4214 0.21 -0.6
84,835 - Shewana3_4214 0.23 +1.4
84,835 - Shewana3_4214 0.23 +0.3
85,001 + Shewana3_4214 0.41 -1.3
85,009 - Shewana3_4214 0.42 +0.2
85,050 + Shewana3_4214 0.47 +0.8
85,104 - Shewana3_4214 0.53 +0.8
85,104 - Shewana3_4214 0.53 +0.2
85,106 + Shewana3_4214 0.53 +1.3
85,106 + Shewana3_4214 0.53 +0.6
85,114 - Shewana3_4214 0.54 -0.3
85,183 + Shewana3_4214 0.61 -1.5
85,430 + Shewana3_4214 0.89 -0.3
85,438 - Shewana3_4214 0.89 -0.8

Or see this region's nucleotide sequence