Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12920

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS12910 and BPHYT_RS12915 are separated by 622 nucleotidesBPHYT_RS12915 and BPHYT_RS12920 are separated by 89 nucleotidesBPHYT_RS12920 and BPHYT_RS12925 are separated by 170 nucleotidesBPHYT_RS12925 and BPHYT_RS12930 are separated by 21 nucleotides BPHYT_RS12910: BPHYT_RS12910 - phage portal protein, lambda family, at 2,947,675 to 2,948,058 _RS12910 BPHYT_RS12915: BPHYT_RS12915 - tRNA-Met, at 2,948,681 to 2,948,757 _RS12915 BPHYT_RS12920: BPHYT_RS12920 - hypothetical protein, at 2,948,847 to 2,949,134 _RS12920 BPHYT_RS12925: BPHYT_RS12925 - exodeoxyribonuclease III, at 2,949,305 to 2,950,081 _RS12925 BPHYT_RS12930: BPHYT_RS12930 - peptidase S9, at 2,950,103 to 2,952,202 _RS12930 Position (kb) 2948 2949 2950Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2948.105 kb on + strandat 2948.264 kb on + strandat 2948.390 kb on + strandat 2948.462 kb on + strandat 2948.651 kb on - strandat 2948.666 kb on - strandat 2948.776 kb on - strandat 2948.777 kb on + strandat 2948.902 kb on + strand, within BPHYT_RS12920at 2949.182 kb on - strandat 2949.489 kb on - strand, within BPHYT_RS12925at 2950.123 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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2,948,105 + -1.0
2,948,264 + -4.0
2,948,390 + +0.4
2,948,462 + +0.5
2,948,651 - +2.2
2,948,666 - -0.1
2,948,776 - +0.7
2,948,777 + -0.0
2,948,902 + BPHYT_RS12920 0.19 +0.2
2,949,182 - -0.3
2,949,489 - BPHYT_RS12925 0.24 +0.3
2,950,123 + -0.1

Or see this region's nucleotide sequence