Experiment: L-Glutamic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS09525 and BPHYT_RS09530 are separated by 75 nucleotides BPHYT_RS09530 and BPHYT_RS09535 are separated by 11 nucleotides BPHYT_RS09535 and BPHYT_RS09540 are separated by 1 nucleotides BPHYT_RS09540 and BPHYT_RS09545 are separated by 163 nucleotides
BPHYT_RS09525: BPHYT_RS09525 - toxin HipA, at 2,161,711 to 2,163,003
_RS09525
BPHYT_RS09530: BPHYT_RS09530 - peptidyl-prolyl cis-trans isomerase, at 2,163,079 to 2,163,858
_RS09530
BPHYT_RS09535: BPHYT_RS09535 - BolA family transcriptional regulator, at 2,163,870 to 2,164,190
_RS09535
BPHYT_RS09540: BPHYT_RS09540 - intracellular septation protein A, at 2,164,192 to 2,164,722
_RS09540
BPHYT_RS09545: BPHYT_RS09545 - peptide methionine sulfoxide reductase, at 2,164,886 to 2,165,308
_RS09545
Position (kb)
2163
2164
2165 Strain fitness (log2 ratio)
-1
0
1 at 2163.905 kb on - strand, within BPHYT_RS09535 at 2163.961 kb on + strand, within BPHYT_RS09535 at 2163.961 kb on + strand, within BPHYT_RS09535 at 2163.962 kb on - strand, within BPHYT_RS09535 at 2164.171 kb on - strand at 2164.171 kb on - strand at 2164.207 kb on - strand at 2164.888 kb on - strand at 2164.904 kb on + strand at 2164.962 kb on - strand, within BPHYT_RS09545 at 2165.145 kb on + strand, within BPHYT_RS09545
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (N) remove 2,163,905 - BPHYT_RS09535 0.11 -0.3 2,163,961 + BPHYT_RS09535 0.28 -0.0 2,163,961 + BPHYT_RS09535 0.28 +1.7 2,163,962 - BPHYT_RS09535 0.29 -0.4 2,164,171 - -0.5 2,164,171 - -0.2 2,164,207 - -0.7 2,164,888 - -0.3 2,164,904 + -0.8 2,164,962 - BPHYT_RS09545 0.18 -0.2 2,165,145 + BPHYT_RS09545 0.61 +1.7
Or see this region's nucleotide sequence