Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09535

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS09525 and BPHYT_RS09530 are separated by 75 nucleotidesBPHYT_RS09530 and BPHYT_RS09535 are separated by 11 nucleotidesBPHYT_RS09535 and BPHYT_RS09540 are separated by 1 nucleotidesBPHYT_RS09540 and BPHYT_RS09545 are separated by 163 nucleotides BPHYT_RS09525: BPHYT_RS09525 - toxin HipA, at 2,161,711 to 2,163,003 _RS09525 BPHYT_RS09530: BPHYT_RS09530 - peptidyl-prolyl cis-trans isomerase, at 2,163,079 to 2,163,858 _RS09530 BPHYT_RS09535: BPHYT_RS09535 - BolA family transcriptional regulator, at 2,163,870 to 2,164,190 _RS09535 BPHYT_RS09540: BPHYT_RS09540 - intracellular septation protein A, at 2,164,192 to 2,164,722 _RS09540 BPHYT_RS09545: BPHYT_RS09545 - peptide methionine sulfoxide reductase, at 2,164,886 to 2,165,308 _RS09545 Position (kb) 2163 2164 2165Strain fitness (log2 ratio) -1 0 1at 2163.905 kb on - strand, within BPHYT_RS09535at 2163.961 kb on + strand, within BPHYT_RS09535at 2163.961 kb on + strand, within BPHYT_RS09535at 2163.962 kb on - strand, within BPHYT_RS09535at 2164.171 kb on - strandat 2164.171 kb on - strandat 2164.207 kb on - strandat 2164.888 kb on - strandat 2164.904 kb on + strandat 2164.962 kb on - strand, within BPHYT_RS09545at 2165.145 kb on + strand, within BPHYT_RS09545

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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2,163,905 - BPHYT_RS09535 0.11 -0.3
2,163,961 + BPHYT_RS09535 0.28 -0.0
2,163,961 + BPHYT_RS09535 0.28 +1.7
2,163,962 - BPHYT_RS09535 0.29 -0.4
2,164,171 - -0.5
2,164,171 - -0.2
2,164,207 - -0.7
2,164,888 - -0.3
2,164,904 + -0.8
2,164,962 - BPHYT_RS09545 0.18 -0.2
2,165,145 + BPHYT_RS09545 0.61 +1.7

Or see this region's nucleotide sequence