Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01670

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01665 and BPHYT_RS01670 are separated by 94 nucleotidesBPHYT_RS01670 and BPHYT_RS01675 are separated by 277 nucleotides BPHYT_RS01665: BPHYT_RS01665 - diaminopimelate epimerase, at 377,915 to 378,814 _RS01665 BPHYT_RS01670: BPHYT_RS01670 - lauroyl acyltransferase, at 378,909 to 379,793 _RS01670 BPHYT_RS01675: BPHYT_RS01675 - S-adenosylmethionine synthase, at 380,071 to 381,261 _RS01675 Position (kb) 378 379 380Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 377.917 kb on - strandat 378.820 kb on + strandat 378.820 kb on + strandat 378.825 kb on + strandat 378.825 kb on + strandat 378.826 kb on - strandat 378.826 kb on - strandat 378.826 kb on - strandat 378.863 kb on - strandat 378.863 kb on - strandat 379.855 kb on - strandat 379.889 kb on - strandat 379.889 kb on - strandat 379.889 kb on - strandat 379.904 kb on + strandat 379.904 kb on + strandat 379.921 kb on + strandat 379.981 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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377,917 - -0.8
378,820 + -3.4
378,820 + -1.0
378,825 + -0.1
378,825 + +0.1
378,826 - +0.2
378,826 - -1.2
378,826 - +1.1
378,863 - -0.1
378,863 - -0.4
379,855 - +1.8
379,889 - -0.2
379,889 - -0.9
379,889 - -0.8
379,904 + +1.1
379,904 + -0.0
379,921 + +0.6
379,981 + +0.1

Or see this region's nucleotide sequence