Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00165

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS00160 and BPHYT_RS00165 are separated by 131 nucleotidesBPHYT_RS00165 and BPHYT_RS00170 are separated by 22 nucleotides BPHYT_RS00160: BPHYT_RS00160 - ABC transporter substrate-binding protein, at 43,261 to 44,049 _RS00160 BPHYT_RS00165: BPHYT_RS00165 - AraC family transcriptional regulator, at 44,181 to 45,026 _RS00165 BPHYT_RS00170: BPHYT_RS00170 - lysine transporter LysE, at 45,049 to 45,636 _RS00170 Position (kb) 44 45 46Strain fitness (log2 ratio) -2 -1 0 1 2 3at 43.185 kb on + strandat 43.185 kb on + strandat 43.185 kb on + strandat 43.456 kb on - strand, within BPHYT_RS00160at 43.768 kb on + strand, within BPHYT_RS00160at 43.768 kb on + strand, within BPHYT_RS00160at 44.047 kb on + strandat 44.048 kb on - strandat 44.048 kb on - strandat 44.059 kb on + strandat 44.059 kb on + strandat 44.129 kb on + strandat 44.130 kb on - strandat 44.133 kb on + strandat 44.155 kb on + strandat 44.163 kb on + strandat 44.178 kb on + strandat 44.302 kb on - strand, within BPHYT_RS00165at 44.362 kb on - strand, within BPHYT_RS00165at 44.847 kb on + strand, within BPHYT_RS00165at 44.868 kb on + strand, within BPHYT_RS00165at 44.868 kb on + strand, within BPHYT_RS00165at 44.893 kb on - strand, within BPHYT_RS00165at 44.893 kb on - strand, within BPHYT_RS00165at 45.016 kb on - strandat 45.065 kb on + strandat 45.200 kb on + strand, within BPHYT_RS00170at 45.201 kb on - strand, within BPHYT_RS00170at 45.315 kb on - strand, within BPHYT_RS00170at 45.380 kb on + strand, within BPHYT_RS00170at 45.390 kb on - strand, within BPHYT_RS00170at 45.571 kb on - strandat 45.571 kb on - strand, within BPHYT_RS00170at 45.625 kb on + strandat 45.626 kb on - strandat 45.626 kb on - strandat 45.626 kb on - strandat 45.650 kb on - strandat 45.706 kb on - strandat 45.706 kb on - strandat 45.855 kb on - strandat 45.995 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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43,185 + +0.8
43,185 + +0.0
43,185 + -0.0
43,456 - BPHYT_RS00160 0.25 +1.2
43,768 + BPHYT_RS00160 0.64 +0.6
43,768 + BPHYT_RS00160 0.64 -2.2
44,047 + +0.4
44,048 - +0.2
44,048 - +0.9
44,059 + +1.5
44,059 + +0.2
44,129 + +0.1
44,130 - +0.4
44,133 + +0.3
44,155 + -0.1
44,163 + +0.4
44,178 + +0.6
44,302 - BPHYT_RS00165 0.14 +0.0
44,362 - BPHYT_RS00165 0.21 +1.5
44,847 + BPHYT_RS00165 0.79 -0.4
44,868 + BPHYT_RS00165 0.81 +0.3
44,868 + BPHYT_RS00165 0.81 +0.1
44,893 - BPHYT_RS00165 0.84 +0.8
44,893 - BPHYT_RS00165 0.84 +0.0
45,016 - +3.1
45,065 + -0.2
45,200 + BPHYT_RS00170 0.26 +0.8
45,201 - BPHYT_RS00170 0.26 +1.5
45,315 - BPHYT_RS00170 0.45 +1.4
45,380 + BPHYT_RS00170 0.56 -2.4
45,390 - BPHYT_RS00170 0.58 +0.8
45,571 - +3.3
45,571 - BPHYT_RS00170 0.89 +1.1
45,625 + -0.1
45,626 - +0.1
45,626 - +1.0
45,626 - -0.1
45,650 - +0.8
45,706 - -0.2
45,706 - +0.8
45,855 - +0.1
45,995 + -0.3

Or see this region's nucleotide sequence