Experiment: LB 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4119 and Ac3H11_4120 are separated by 597 nucleotides Ac3H11_4120 and Ac3H11_4121 are separated by 45 nucleotides
Ac3H11_4119 - Integral membrane protein, at 371,908 to 372,600
_4119
Ac3H11_4120 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 373,198 to 375,720
_4120
Ac3H11_4121 - Fe-S OXIDOREDUCTASE (1.8.-.-), at 375,766 to 378,267
_4121
Position (kb) 373
374
375
376 Strain fitness (log2 ratio) -2
-1
0
1
2 at 372.382 kb on + strand, within Ac3H11_4119 at 372.382 kb on + strand, within Ac3H11_4119 at 372.382 kb on + strand, within Ac3H11_4119 at 372.382 kb on + strand, within Ac3H11_4119 at 372.382 kb on + strand, within Ac3H11_4119 at 372.382 kb on + strand, within Ac3H11_4119 at 372.382 kb on + strand, within Ac3H11_4119 at 372.382 kb on + strand, within Ac3H11_4119 at 372.382 kb on + strand, within Ac3H11_4119 at 372.382 kb on + strand, within Ac3H11_4119 at 372.382 kb on + strand, within Ac3H11_4119 at 372.383 kb on - strand, within Ac3H11_4119 at 372.383 kb on - strand, within Ac3H11_4119 at 372.383 kb on - strand, within Ac3H11_4119 at 372.383 kb on - strand, within Ac3H11_4119 at 372.383 kb on - strand, within Ac3H11_4119 at 372.383 kb on - strand, within Ac3H11_4119 at 372.383 kb on - strand, within Ac3H11_4119 at 372.383 kb on - strand, within Ac3H11_4119 at 372.535 kb on + strand at 372.535 kb on + strand at 372.535 kb on + strand at 372.535 kb on + strand at 372.535 kb on + strand at 372.536 kb on - strand at 372.536 kb on - strand at 372.536 kb on - strand at 372.536 kb on - strand at 372.536 kb on - strand at 372.536 kb on - strand at 372.673 kb on + strand at 372.694 kb on + strand at 372.694 kb on + strand at 372.694 kb on + strand at 372.694 kb on + strand at 372.694 kb on + strand at 372.695 kb on - strand at 372.695 kb on - strand at 372.695 kb on - strand at 372.696 kb on + strand at 372.696 kb on + strand at 372.696 kb on + strand at 372.696 kb on + strand at 372.696 kb on + strand at 372.697 kb on - strand at 372.697 kb on - strand at 372.697 kb on - strand at 372.697 kb on - strand at 372.860 kb on + strand at 372.860 kb on + strand at 372.860 kb on + strand at 372.860 kb on + strand at 372.860 kb on + strand at 372.860 kb on + strand at 372.860 kb on + strand at 372.861 kb on - strand at 372.861 kb on - strand at 372.861 kb on - strand at 372.861 kb on - strand at 372.861 kb on - strand at 372.862 kb on + strand at 372.862 kb on + strand at 372.862 kb on + strand at 372.862 kb on + strand at 372.862 kb on + strand at 372.862 kb on + strand at 372.862 kb on + strand at 372.862 kb on + strand at 372.862 kb on + strand at 372.862 kb on + strand at 372.862 kb on + strand at 372.862 kb on + strand at 372.862 kb on + strand at 372.862 kb on + strand at 372.862 kb on + strand at 372.862 kb on + strand at 372.862 kb on + strand at 372.862 kb on + strand at 372.862 kb on + strand at 372.863 kb on - strand at 372.863 kb on - strand at 372.863 kb on - strand at 372.863 kb on - strand at 372.863 kb on - strand at 372.863 kb on - strand at 372.863 kb on - strand at 372.863 kb on - strand at 372.863 kb on - strand at 372.864 kb on + strand at 372.864 kb on + strand at 372.865 kb on - strand at 372.865 kb on - strand at 372.865 kb on - strand at 372.865 kb on - strand at 372.865 kb on - strand at 372.974 kb on - strand at 372.974 kb on - strand at 372.989 kb on - strand at 373.052 kb on + strand at 373.052 kb on + strand at 373.052 kb on + strand at 373.052 kb on + strand at 373.052 kb on + strand at 373.052 kb on + strand at 373.052 kb on + strand at 373.052 kb on + strand at 373.052 kb on + strand at 373.104 kb on + strand at 373.104 kb on + strand at 373.104 kb on + strand at 373.124 kb on + strand at 373.124 kb on + strand at 373.124 kb on + strand at 373.393 kb on + strand at 373.393 kb on + strand at 373.393 kb on + strand at 373.393 kb on + strand at 373.393 kb on + strand at 373.393 kb on + strand at 373.393 kb on + strand at 373.393 kb on + strand at 373.393 kb on + strand at 373.393 kb on + strand at 373.393 kb on + strand at 373.393 kb on + strand at 373.394 kb on - strand at 373.394 kb on - strand at 373.394 kb on - strand at 373.394 kb on - strand at 373.394 kb on - strand at 373.394 kb on - strand at 373.394 kb on - strand at 373.394 kb on - strand at 373.394 kb on - strand at 373.394 kb on - strand at 373.394 kb on - strand at 373.394 kb on - strand at 373.408 kb on + strand at 373.409 kb on - strand at 373.595 kb on - strand, within Ac3H11_4120 at 373.595 kb on - strand, within Ac3H11_4120 at 373.595 kb on - strand, within Ac3H11_4120 at 373.654 kb on + strand, within Ac3H11_4120 at 373.654 kb on + strand, within Ac3H11_4120 at 373.655 kb on - strand, within Ac3H11_4120 at 373.655 kb on - strand, within Ac3H11_4120 at 373.655 kb on - strand, within Ac3H11_4120 at 373.655 kb on - strand, within Ac3H11_4120 at 373.655 kb on - strand, within Ac3H11_4120 at 373.655 kb on - strand, within Ac3H11_4120 at 373.655 kb on - strand, within Ac3H11_4120 at 373.655 kb on - strand, within Ac3H11_4120 at 374.023 kb on + strand, within Ac3H11_4120 at 374.023 kb on + strand, within Ac3H11_4120 at 374.023 kb on + strand, within Ac3H11_4120 at 374.023 kb on + strand, within Ac3H11_4120 at 374.024 kb on - strand, within Ac3H11_4120 at 374.024 kb on - strand, within Ac3H11_4120 at 374.024 kb on - strand, within Ac3H11_4120 at 374.024 kb on - strand, within Ac3H11_4120 at 374.024 kb on - strand, within Ac3H11_4120 at 374.314 kb on + strand, within Ac3H11_4120 at 374.314 kb on + strand, within Ac3H11_4120 at 374.314 kb on + strand, within Ac3H11_4120 at 374.314 kb on + strand, within Ac3H11_4120 at 374.314 kb on + strand, within Ac3H11_4120 at 374.314 kb on + strand, within Ac3H11_4120 at 374.314 kb on + strand, within Ac3H11_4120 at 374.314 kb on + strand, within Ac3H11_4120 at 374.315 kb on - strand, within Ac3H11_4120 at 374.315 kb on - strand, within Ac3H11_4120 at 374.315 kb on - strand, within Ac3H11_4120 at 374.315 kb on - strand, within Ac3H11_4120 at 374.315 kb on - strand, within Ac3H11_4120 at 374.315 kb on - strand, within Ac3H11_4120 at 374.315 kb on - strand, within Ac3H11_4120 at 374.315 kb on - strand, within Ac3H11_4120 at 374.315 kb on - strand, within Ac3H11_4120 at 374.315 kb on - strand, within Ac3H11_4120 at 374.446 kb on + strand, within Ac3H11_4120 at 374.446 kb on + strand, within Ac3H11_4120 at 374.446 kb on + strand, within Ac3H11_4120 at 374.446 kb on + strand, within Ac3H11_4120 at 374.447 kb on - strand, within Ac3H11_4120 at 374.447 kb on - strand at 374.447 kb on - strand, within Ac3H11_4120 at 374.447 kb on - strand, within Ac3H11_4120 at 374.447 kb on - strand, within Ac3H11_4120 at 374.447 kb on - strand, within Ac3H11_4120 at 374.447 kb on - strand, within Ac3H11_4120 at 374.447 kb on - strand, within Ac3H11_4120 at 374.821 kb on + strand, within Ac3H11_4120 at 374.821 kb on + strand, within Ac3H11_4120 at 374.822 kb on - strand, within Ac3H11_4120 at 374.822 kb on - strand, within Ac3H11_4120 at 374.822 kb on - strand, within Ac3H11_4120 at 374.822 kb on - strand, within Ac3H11_4120 at 375.046 kb on + strand, within Ac3H11_4120 at 375.046 kb on + strand, within Ac3H11_4120 at 375.373 kb on + strand, within Ac3H11_4120 at 375.373 kb on + strand, within Ac3H11_4120 at 375.373 kb on + strand, within Ac3H11_4120 at 375.373 kb on + strand, within Ac3H11_4120 at 375.374 kb on - strand, within Ac3H11_4120 at 375.397 kb on + strand, within Ac3H11_4120 at 375.397 kb on + strand, within Ac3H11_4120 at 375.397 kb on + strand, within Ac3H11_4120 at 375.397 kb on + strand, within Ac3H11_4120 at 375.398 kb on - strand, within Ac3H11_4120 at 375.565 kb on + strand at 375.565 kb on + strand at 375.565 kb on + strand at 375.565 kb on + strand at 375.566 kb on - strand at 375.566 kb on - strand at 375.577 kb on + strand at 375.577 kb on + strand at 375.610 kb on + strand at 375.610 kb on + strand at 375.610 kb on + strand at 375.610 kb on + strand at 375.611 kb on - strand at 375.611 kb on - strand at 375.611 kb on - strand at 375.975 kb on - strand at 375.975 kb on - strand at 375.975 kb on - strand at 376.031 kb on + strand, within Ac3H11_4121 at 376.155 kb on - strand, within Ac3H11_4121 at 376.274 kb on + strand, within Ac3H11_4121 at 376.274 kb on + strand, within Ac3H11_4121 at 376.274 kb on + strand, within Ac3H11_4121 at 376.274 kb on + strand, within Ac3H11_4121 at 376.274 kb on + strand, within Ac3H11_4121 at 376.275 kb on - strand, within Ac3H11_4121 at 376.275 kb on - strand, within Ac3H11_4121 at 376.275 kb on - strand, within Ac3H11_4121 at 376.275 kb on - strand, within Ac3H11_4121 at 376.275 kb on - strand, within Ac3H11_4121 at 376.275 kb on - strand, within Ac3H11_4121 at 376.307 kb on + strand, within Ac3H11_4121 at 376.307 kb on + strand, within Ac3H11_4121 at 376.307 kb on + strand, within Ac3H11_4121 at 376.308 kb on - strand, within Ac3H11_4121 at 376.308 kb on - strand, within Ac3H11_4121 at 376.409 kb on + strand, within Ac3H11_4121 at 376.410 kb on - strand, within Ac3H11_4121 at 376.410 kb on - strand, within Ac3H11_4121 at 376.410 kb on - strand, within Ac3H11_4121 at 376.410 kb on - strand, within Ac3H11_4121 at 376.478 kb on + strand, within Ac3H11_4121 at 376.478 kb on + strand, within Ac3H11_4121 at 376.478 kb on + strand, within Ac3H11_4121 at 376.479 kb on - strand, within Ac3H11_4121 at 376.479 kb on - strand, within Ac3H11_4121 at 376.479 kb on - strand, within Ac3H11_4121 at 376.479 kb on - strand, within Ac3H11_4121 at 376.586 kb on + strand, within Ac3H11_4121 at 376.586 kb on + strand, within Ac3H11_4121 at 376.586 kb on + strand, within Ac3H11_4121 at 376.587 kb on - strand, within Ac3H11_4121 at 376.613 kb on + strand, within Ac3H11_4121 at 376.614 kb on - strand, within Ac3H11_4121 at 376.673 kb on + strand, within Ac3H11_4121 at 376.673 kb on + strand, within Ac3H11_4121
Per-strain Table
Position Strand Gene LocusTag Fraction LB 23C remove 372,382 + Ac3H11_4119 0.68 -0.8 372,382 + Ac3H11_4119 0.68 +1.9 372,382 + Ac3H11_4119 0.68 +0.2 372,382 + Ac3H11_4119 0.68 +0.7 372,382 + Ac3H11_4119 0.68 -0.1 372,382 + Ac3H11_4119 0.68 -0.0 372,382 + Ac3H11_4119 0.68 -0.3 372,382 + Ac3H11_4119 0.68 -0.6 372,382 + Ac3H11_4119 0.68 +0.1 372,382 + Ac3H11_4119 0.68 +0.5 372,382 + Ac3H11_4119 0.68 +0.9 372,383 - Ac3H11_4119 0.69 -0.5 372,383 - Ac3H11_4119 0.69 +0.8 372,383 - Ac3H11_4119 0.69 +2.2 372,383 - Ac3H11_4119 0.69 +0.4 372,383 - Ac3H11_4119 0.69 -0.1 372,383 - Ac3H11_4119 0.69 +1.2 372,383 - Ac3H11_4119 0.69 +0.5 372,383 - Ac3H11_4119 0.69 -1.8 372,535 + -0.9 372,535 + +0.3 372,535 + -0.5 372,535 + +0.7 372,535 + +0.2 372,536 - +0.2 372,536 - +0.6 372,536 - +0.3 372,536 - +0.3 372,536 - -0.4 372,536 - +0.4 372,673 + +0.9 372,694 + +0.3 372,694 + +0.2 372,694 + +0.2 372,694 + +1.0 372,694 + +0.1 372,695 - +0.1 372,695 - -0.3 372,695 - +0.3 372,696 + +1.2 372,696 + -0.7 372,696 + -0.3 372,696 + +0.0 372,696 + -0.1 372,697 - -0.3 372,697 - +0.1 372,697 - -0.2 372,697 - +0.6 372,860 + +0.0 372,860 + +1.1 372,860 + +0.1 372,860 + +0.2 372,860 + +0.3 372,860 + -0.0 372,860 + +0.5 372,861 - +0.4 372,861 - -0.0 372,861 - -0.2 372,861 - -0.6 372,861 - +1.2 372,862 + +0.4 372,862 + -0.4 372,862 + +0.1 372,862 + +0.2 372,862 + -0.1 372,862 + -0.2 372,862 + +0.1 372,862 + +0.6 372,862 + +0.0 372,862 + -1.7 372,862 + +0.3 372,862 + +0.6 372,862 + +0.3 372,862 + +0.1 372,862 + +0.2 372,862 + +0.1 372,862 + +0.3 372,862 + -0.2 372,862 + -0.6 372,863 - +0.3 372,863 - +0.0 372,863 - +0.4 372,863 - +0.5 372,863 - -0.2 372,863 - -0.2 372,863 - -0.1 372,863 - -0.6 372,863 - +1.1 372,864 + +0.2 372,864 + +0.6 372,865 - +0.2 372,865 - +0.5 372,865 - -0.6 372,865 - +1.3 372,865 - +0.3 372,974 - -0.5 372,974 - -0.0 372,989 - +1.3 373,052 + +0.7 373,052 + +0.2 373,052 + +0.1 373,052 + +0.4 373,052 + -0.1 373,052 + +0.5 373,052 + +0.0 373,052 + +0.2 373,052 + +0.9 373,104 + +0.1 373,104 + +0.5 373,104 + +0.8 373,124 + -0.1 373,124 + +1.0 373,124 + +0.3 373,393 + +0.2 373,393 + +1.6 373,393 + +0.5 373,393 + +1.3 373,393 + +0.5 373,393 + +0.2 373,393 + +0.4 373,393 + +0.4 373,393 + +0.3 373,393 + +1.2 373,393 + -0.6 373,393 + +0.8 373,394 - +0.0 373,394 - -0.1 373,394 - -0.1 373,394 - +0.7 373,394 - +0.8 373,394 - -0.6 373,394 - +0.6 373,394 - -1.1 373,394 - +0.6 373,394 - +0.6 373,394 - -0.3 373,394 - +0.2 373,408 + +0.0 373,409 - -0.8 373,595 - Ac3H11_4120 0.16 +0.4 373,595 - Ac3H11_4120 0.16 -0.5 373,595 - Ac3H11_4120 0.16 -0.4 373,654 + Ac3H11_4120 0.18 -0.6 373,654 + Ac3H11_4120 0.18 +0.4 373,655 - Ac3H11_4120 0.18 +0.6 373,655 - Ac3H11_4120 0.18 +0.8 373,655 - Ac3H11_4120 0.18 +0.7 373,655 - Ac3H11_4120 0.18 +0.8 373,655 - Ac3H11_4120 0.18 +0.7 373,655 - Ac3H11_4120 0.18 +0.1 373,655 - Ac3H11_4120 0.18 -0.4 373,655 - Ac3H11_4120 0.18 -0.4 374,023 + Ac3H11_4120 0.33 +0.6 374,023 + Ac3H11_4120 0.33 +0.0 374,023 + Ac3H11_4120 0.33 -0.1 374,023 + Ac3H11_4120 0.33 +0.6 374,024 - Ac3H11_4120 0.33 +0.3 374,024 - Ac3H11_4120 0.33 +0.3 374,024 - Ac3H11_4120 0.33 +0.0 374,024 - Ac3H11_4120 0.33 -0.8 374,024 - Ac3H11_4120 0.33 -0.2 374,314 + Ac3H11_4120 0.44 +0.6 374,314 + Ac3H11_4120 0.44 +0.5 374,314 + Ac3H11_4120 0.44 -0.2 374,314 + Ac3H11_4120 0.44 +0.3 374,314 + Ac3H11_4120 0.44 -0.7 374,314 + Ac3H11_4120 0.44 +0.5 374,314 + Ac3H11_4120 0.44 +0.6 374,314 + Ac3H11_4120 0.44 -1.1 374,315 - Ac3H11_4120 0.44 +0.4 374,315 - Ac3H11_4120 0.44 +0.4 374,315 - Ac3H11_4120 0.44 +0.2 374,315 - Ac3H11_4120 0.44 -0.7 374,315 - Ac3H11_4120 0.44 +0.7 374,315 - Ac3H11_4120 0.44 +0.5 374,315 - Ac3H11_4120 0.44 +0.5 374,315 - Ac3H11_4120 0.44 +0.9 374,315 - Ac3H11_4120 0.44 -0.1 374,315 - Ac3H11_4120 0.44 -2.3 374,446 + Ac3H11_4120 0.49 +0.5 374,446 + Ac3H11_4120 0.49 +1.2 374,446 + Ac3H11_4120 0.49 +0.9 374,446 + Ac3H11_4120 0.49 +0.0 374,447 - Ac3H11_4120 0.50 +0.2 374,447 - +2.1 374,447 - Ac3H11_4120 0.50 -1.1 374,447 - Ac3H11_4120 0.50 -0.2 374,447 - Ac3H11_4120 0.50 -0.7 374,447 - Ac3H11_4120 0.50 -0.5 374,447 - Ac3H11_4120 0.50 +0.4 374,447 - Ac3H11_4120 0.50 +0.1 374,821 + Ac3H11_4120 0.64 +0.2 374,821 + Ac3H11_4120 0.64 -1.3 374,822 - Ac3H11_4120 0.64 +0.2 374,822 - Ac3H11_4120 0.64 +0.8 374,822 - Ac3H11_4120 0.64 +0.2 374,822 - Ac3H11_4120 0.64 +0.5 375,046 + Ac3H11_4120 0.73 +0.8 375,046 + Ac3H11_4120 0.73 +0.1 375,373 + Ac3H11_4120 0.86 +0.6 375,373 + Ac3H11_4120 0.86 +0.6 375,373 + Ac3H11_4120 0.86 +0.7 375,373 + Ac3H11_4120 0.86 +0.7 375,374 - Ac3H11_4120 0.86 +0.5 375,397 + Ac3H11_4120 0.87 +0.0 375,397 + Ac3H11_4120 0.87 -1.1 375,397 + Ac3H11_4120 0.87 +0.5 375,397 + Ac3H11_4120 0.87 -0.4 375,398 - Ac3H11_4120 0.87 -0.0 375,565 + +0.6 375,565 + +0.2 375,565 + -0.2 375,565 + -0.3 375,566 - +0.1 375,566 - +0.0 375,577 + -0.3 375,577 + +0.2 375,610 + +0.2 375,610 + +0.6 375,610 + +0.7 375,610 + -1.6 375,611 - -1.3 375,611 - +0.9 375,611 - +0.2 375,975 - +0.4 375,975 - +0.6 375,975 - +1.3 376,031 + Ac3H11_4121 0.11 +1.0 376,155 - Ac3H11_4121 0.16 -0.0 376,274 + Ac3H11_4121 0.20 -0.2 376,274 + Ac3H11_4121 0.20 -0.2 376,274 + Ac3H11_4121 0.20 +0.9 376,274 + Ac3H11_4121 0.20 +0.4 376,274 + Ac3H11_4121 0.20 -0.4 376,275 - Ac3H11_4121 0.20 -0.2 376,275 - Ac3H11_4121 0.20 +0.4 376,275 - Ac3H11_4121 0.20 +1.2 376,275 - Ac3H11_4121 0.20 -0.0 376,275 - Ac3H11_4121 0.20 +1.5 376,275 - Ac3H11_4121 0.20 +0.1 376,307 + Ac3H11_4121 0.22 +1.1 376,307 + Ac3H11_4121 0.22 +0.6 376,307 + Ac3H11_4121 0.22 +0.6 376,308 - Ac3H11_4121 0.22 -0.2 376,308 - Ac3H11_4121 0.22 +0.2 376,409 + Ac3H11_4121 0.26 +0.0 376,410 - Ac3H11_4121 0.26 -0.3 376,410 - Ac3H11_4121 0.26 +0.6 376,410 - Ac3H11_4121 0.26 -0.1 376,410 - Ac3H11_4121 0.26 +0.4 376,478 + Ac3H11_4121 0.28 +1.0 376,478 + Ac3H11_4121 0.28 +0.4 376,478 + Ac3H11_4121 0.28 +0.4 376,479 - Ac3H11_4121 0.28 +0.8 376,479 - Ac3H11_4121 0.28 -0.6 376,479 - Ac3H11_4121 0.28 +0.3 376,479 - Ac3H11_4121 0.28 -0.4 376,586 + Ac3H11_4121 0.33 +0.2 376,586 + Ac3H11_4121 0.33 +0.2 376,586 + Ac3H11_4121 0.33 +0.2 376,587 - Ac3H11_4121 0.33 -0.1 376,613 + Ac3H11_4121 0.34 -1.1 376,614 - Ac3H11_4121 0.34 +0.0 376,673 + Ac3H11_4121 0.36 +0.8 376,673 + Ac3H11_4121 0.36 +0.3
Or see this region's nucleotide sequence