Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS02750

Experiment: L-Glutamine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS02750 and AZOBR_RS02755 are separated by 113 nucleotides AZOBR_RS02750: AZOBR_RS02750 - hypothetical protein, at 575,279 to 576,400 _RS02750 AZOBR_RS02755: AZOBR_RS02755 - hypothetical protein, at 576,514 to 578,763 _RS02755 Position (kb) 575 576 577Strain fitness (log2 ratio) -2 -1 0 1at 574.295 kb on - strandat 574.402 kb on - strandat 574.411 kb on - strandat 574.411 kb on - strandat 574.447 kb on - strandat 575.256 kb on + strandat 575.266 kb on + strandat 575.266 kb on + strandat 575.266 kb on + strandat 575.266 kb on + strandat 575.275 kb on + strandat 575.275 kb on + strandat 575.275 kb on + strandat 575.275 kb on + strandat 575.276 kb on - strandat 575.276 kb on - strandat 575.402 kb on + strand, within AZOBR_RS02750at 575.402 kb on + strand, within AZOBR_RS02750at 575.402 kb on + strand, within AZOBR_RS02750at 575.403 kb on - strand, within AZOBR_RS02750at 575.403 kb on - strand, within AZOBR_RS02750at 575.403 kb on - strand, within AZOBR_RS02750at 575.417 kb on - strand, within AZOBR_RS02750at 575.525 kb on + strand, within AZOBR_RS02750at 575.526 kb on - strand, within AZOBR_RS02750at 575.552 kb on - strand, within AZOBR_RS02750at 575.562 kb on - strand, within AZOBR_RS02750at 575.565 kb on + strand, within AZOBR_RS02750at 575.682 kb on + strand, within AZOBR_RS02750at 575.699 kb on + strand, within AZOBR_RS02750at 575.700 kb on - strand, within AZOBR_RS02750at 575.730 kb on + strand, within AZOBR_RS02750at 575.731 kb on - strand, within AZOBR_RS02750at 575.762 kb on + strand, within AZOBR_RS02750at 575.762 kb on + strand, within AZOBR_RS02750at 575.762 kb on + strand, within AZOBR_RS02750at 575.762 kb on + strand, within AZOBR_RS02750at 575.763 kb on - strand, within AZOBR_RS02750at 575.763 kb on - strand, within AZOBR_RS02750at 575.763 kb on - strand, within AZOBR_RS02750at 575.763 kb on - strand, within AZOBR_RS02750at 575.763 kb on - strand, within AZOBR_RS02750at 575.763 kb on - strand, within AZOBR_RS02750at 575.778 kb on + strand, within AZOBR_RS02750at 575.778 kb on + strand, within AZOBR_RS02750at 575.778 kb on + strand, within AZOBR_RS02750at 575.778 kb on + strand, within AZOBR_RS02750at 575.778 kb on + strand, within AZOBR_RS02750at 575.778 kb on + strand, within AZOBR_RS02750at 575.779 kb on - strand, within AZOBR_RS02750at 575.779 kb on - strand, within AZOBR_RS02750at 575.792 kb on - strand, within AZOBR_RS02750at 575.792 kb on - strand, within AZOBR_RS02750at 575.792 kb on - strand, within AZOBR_RS02750at 575.888 kb on - strand, within AZOBR_RS02750at 575.888 kb on - strand, within AZOBR_RS02750at 575.977 kb on - strand, within AZOBR_RS02750at 575.977 kb on - strand, within AZOBR_RS02750at 575.991 kb on + strand, within AZOBR_RS02750at 575.992 kb on - strand, within AZOBR_RS02750at 576.157 kb on - strand, within AZOBR_RS02750at 576.157 kb on - strand, within AZOBR_RS02750at 576.189 kb on - strand, within AZOBR_RS02750at 576.197 kb on + strand, within AZOBR_RS02750at 576.358 kb on + strandat 576.398 kb on + strandat 576.428 kb on + strandat 576.429 kb on - strandat 576.429 kb on - strandat 576.533 kb on + strandat 576.533 kb on + strandat 576.534 kb on - strandat 576.562 kb on + strandat 576.562 kb on + strandat 576.562 kb on + strandat 576.562 kb on + strandat 576.601 kb on - strandat 576.601 kb on - strandat 576.605 kb on + strandat 576.700 kb on + strandat 576.779 kb on - strand, within AZOBR_RS02755at 576.814 kb on - strand, within AZOBR_RS02755at 576.814 kb on - strand, within AZOBR_RS02755at 576.814 kb on - strand, within AZOBR_RS02755at 576.814 kb on - strand, within AZOBR_RS02755at 576.827 kb on + strand, within AZOBR_RS02755at 576.827 kb on + strand, within AZOBR_RS02755at 576.828 kb on - strand, within AZOBR_RS02755at 576.843 kb on + strand, within AZOBR_RS02755at 576.846 kb on + strand, within AZOBR_RS02755at 576.847 kb on - strand, within AZOBR_RS02755at 576.847 kb on - strand, within AZOBR_RS02755at 576.886 kb on + strand, within AZOBR_RS02755at 576.888 kb on + strand, within AZOBR_RS02755at 576.888 kb on + strand, within AZOBR_RS02755at 576.888 kb on + strand, within AZOBR_RS02755at 576.888 kb on + strand, within AZOBR_RS02755at 576.960 kb on - strand, within AZOBR_RS02755at 577.018 kb on + strand, within AZOBR_RS02755at 577.019 kb on - strand, within AZOBR_RS02755at 577.019 kb on - strand, within AZOBR_RS02755at 577.019 kb on - strand, within AZOBR_RS02755at 577.019 kb on - strand, within AZOBR_RS02755at 577.019 kb on - strand, within AZOBR_RS02755at 577.019 kb on - strand, within AZOBR_RS02755at 577.019 kb on - strand, within AZOBR_RS02755at 577.023 kb on + strand, within AZOBR_RS02755at 577.024 kb on - strand, within AZOBR_RS02755at 577.024 kb on - strand, within AZOBR_RS02755at 577.091 kb on + strand, within AZOBR_RS02755at 577.091 kb on + strand, within AZOBR_RS02755at 577.091 kb on + strand, within AZOBR_RS02755at 577.092 kb on - strand, within AZOBR_RS02755at 577.092 kb on - strand, within AZOBR_RS02755at 577.092 kb on - strand, within AZOBR_RS02755at 577.092 kb on - strand, within AZOBR_RS02755at 577.092 kb on - strand, within AZOBR_RS02755at 577.092 kb on - strand, within AZOBR_RS02755at 577.092 kb on - strand, within AZOBR_RS02755at 577.092 kb on - strand, within AZOBR_RS02755at 577.092 kb on - strand, within AZOBR_RS02755at 577.092 kb on - strand, within AZOBR_RS02755at 577.092 kb on - strand, within AZOBR_RS02755at 577.097 kb on - strand, within AZOBR_RS02755at 577.109 kb on + strand, within AZOBR_RS02755at 577.109 kb on + strand, within AZOBR_RS02755at 577.109 kb on + strand, within AZOBR_RS02755at 577.110 kb on - strand, within AZOBR_RS02755at 577.110 kb on - strand, within AZOBR_RS02755at 577.110 kb on - strand, within AZOBR_RS02755at 577.110 kb on - strand, within AZOBR_RS02755at 577.110 kb on - strand, within AZOBR_RS02755at 577.110 kb on - strand, within AZOBR_RS02755at 577.206 kb on + strand, within AZOBR_RS02755at 577.207 kb on - strand, within AZOBR_RS02755at 577.207 kb on - strand, within AZOBR_RS02755at 577.220 kb on + strand, within AZOBR_RS02755at 577.220 kb on + strand, within AZOBR_RS02755at 577.220 kb on + strand, within AZOBR_RS02755at 577.221 kb on - strand, within AZOBR_RS02755at 577.288 kb on + strand, within AZOBR_RS02755at 577.288 kb on + strand, within AZOBR_RS02755at 577.289 kb on - strand, within AZOBR_RS02755at 577.308 kb on + strand, within AZOBR_RS02755at 577.308 kb on + strand, within AZOBR_RS02755at 577.392 kb on - strand, within AZOBR_RS02755at 577.392 kb on - strand, within AZOBR_RS02755

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
remove
574,295 - -1.0
574,402 - +0.7
574,411 - -0.1
574,411 - -0.7
574,447 - +0.4
575,256 + -0.2
575,266 + +0.2
575,266 + +0.1
575,266 + -0.1
575,266 + -0.1
575,275 + -2.5
575,275 + -0.8
575,275 + -0.5
575,275 + -0.6
575,276 - -1.1
575,276 - -0.0
575,402 + AZOBR_RS02750 0.11 -0.9
575,402 + AZOBR_RS02750 0.11 -0.2
575,402 + AZOBR_RS02750 0.11 +1.0
575,403 - AZOBR_RS02750 0.11 -0.3
575,403 - AZOBR_RS02750 0.11 -0.7
575,403 - AZOBR_RS02750 0.11 -1.0
575,417 - AZOBR_RS02750 0.12 +0.1
575,525 + AZOBR_RS02750 0.22 -1.0
575,526 - AZOBR_RS02750 0.22 -0.1
575,552 - AZOBR_RS02750 0.24 +0.8
575,562 - AZOBR_RS02750 0.25 -0.5
575,565 + AZOBR_RS02750 0.25 -1.3
575,682 + AZOBR_RS02750 0.36 -0.2
575,699 + AZOBR_RS02750 0.37 -0.6
575,700 - AZOBR_RS02750 0.38 -0.2
575,730 + AZOBR_RS02750 0.40 +0.6
575,731 - AZOBR_RS02750 0.40 -1.6
575,762 + AZOBR_RS02750 0.43 -0.1
575,762 + AZOBR_RS02750 0.43 -0.4
575,762 + AZOBR_RS02750 0.43 +0.8
575,762 + AZOBR_RS02750 0.43 -1.0
575,763 - AZOBR_RS02750 0.43 -0.5
575,763 - AZOBR_RS02750 0.43 -0.2
575,763 - AZOBR_RS02750 0.43 +0.2
575,763 - AZOBR_RS02750 0.43 -0.7
575,763 - AZOBR_RS02750 0.43 -2.0
575,763 - AZOBR_RS02750 0.43 -0.5
575,778 + AZOBR_RS02750 0.44 +0.2
575,778 + AZOBR_RS02750 0.44 -0.2
575,778 + AZOBR_RS02750 0.44 -0.6
575,778 + AZOBR_RS02750 0.44 -0.8
575,778 + AZOBR_RS02750 0.44 -0.2
575,778 + AZOBR_RS02750 0.44 -0.0
575,779 - AZOBR_RS02750 0.45 -0.7
575,779 - AZOBR_RS02750 0.45 -0.8
575,792 - AZOBR_RS02750 0.46 -0.1
575,792 - AZOBR_RS02750 0.46 -0.9
575,792 - AZOBR_RS02750 0.46 +0.7
575,888 - AZOBR_RS02750 0.54 +1.2
575,888 - AZOBR_RS02750 0.54 -0.7
575,977 - AZOBR_RS02750 0.62 -0.6
575,977 - AZOBR_RS02750 0.62 -0.3
575,991 + AZOBR_RS02750 0.63 -2.2
575,992 - AZOBR_RS02750 0.64 -0.1
576,157 - AZOBR_RS02750 0.78 -1.2
576,157 - AZOBR_RS02750 0.78 +0.8
576,189 - AZOBR_RS02750 0.81 +0.4
576,197 + AZOBR_RS02750 0.82 -0.6
576,358 + +0.1
576,398 + -0.8
576,428 + -0.7
576,429 - +0.4
576,429 - -1.1
576,533 + -0.6
576,533 + -0.5
576,534 - -0.0
576,562 + -0.2
576,562 + -0.2
576,562 + -0.9
576,562 + -0.0
576,601 - +0.5
576,601 - +0.5
576,605 + -0.3
576,700 + +0.8
576,779 - AZOBR_RS02755 0.12 -0.6
576,814 - AZOBR_RS02755 0.13 +0.8
576,814 - AZOBR_RS02755 0.13 -2.2
576,814 - AZOBR_RS02755 0.13 +0.4
576,814 - AZOBR_RS02755 0.13 -1.1
576,827 + AZOBR_RS02755 0.14 -0.1
576,827 + AZOBR_RS02755 0.14 -0.8
576,828 - AZOBR_RS02755 0.14 -0.3
576,843 + AZOBR_RS02755 0.15 -0.0
576,846 + AZOBR_RS02755 0.15 +0.2
576,847 - AZOBR_RS02755 0.15 -1.6
576,847 - AZOBR_RS02755 0.15 -0.1
576,886 + AZOBR_RS02755 0.17 -0.3
576,888 + AZOBR_RS02755 0.17 +1.3
576,888 + AZOBR_RS02755 0.17 -0.2
576,888 + AZOBR_RS02755 0.17 +0.3
576,888 + AZOBR_RS02755 0.17 +0.4
576,960 - AZOBR_RS02755 0.20 -0.2
577,018 + AZOBR_RS02755 0.22 +1.1
577,019 - AZOBR_RS02755 0.22 -0.2
577,019 - AZOBR_RS02755 0.22 -0.4
577,019 - AZOBR_RS02755 0.22 +1.5
577,019 - AZOBR_RS02755 0.22 -0.0
577,019 - AZOBR_RS02755 0.22 +0.6
577,019 - AZOBR_RS02755 0.22 -0.2
577,019 - AZOBR_RS02755 0.22 -1.0
577,023 + AZOBR_RS02755 0.23 -0.2
577,024 - AZOBR_RS02755 0.23 -0.5
577,024 - AZOBR_RS02755 0.23 +0.2
577,091 + AZOBR_RS02755 0.26 +0.1
577,091 + AZOBR_RS02755 0.26 +0.3
577,091 + AZOBR_RS02755 0.26 -0.4
577,092 - AZOBR_RS02755 0.26 -0.8
577,092 - AZOBR_RS02755 0.26 -0.5
577,092 - AZOBR_RS02755 0.26 -0.0
577,092 - AZOBR_RS02755 0.26 -0.1
577,092 - AZOBR_RS02755 0.26 -0.1
577,092 - AZOBR_RS02755 0.26 -0.0
577,092 - AZOBR_RS02755 0.26 +0.2
577,092 - AZOBR_RS02755 0.26 -1.0
577,092 - AZOBR_RS02755 0.26 -0.3
577,092 - AZOBR_RS02755 0.26 +0.5
577,092 - AZOBR_RS02755 0.26 -0.9
577,097 - AZOBR_RS02755 0.26 +1.3
577,109 + AZOBR_RS02755 0.26 -0.3
577,109 + AZOBR_RS02755 0.26 -0.3
577,109 + AZOBR_RS02755 0.26 -0.0
577,110 - AZOBR_RS02755 0.26 -0.3
577,110 - AZOBR_RS02755 0.26 +0.7
577,110 - AZOBR_RS02755 0.26 +0.3
577,110 - AZOBR_RS02755 0.26 +0.5
577,110 - AZOBR_RS02755 0.26 +0.1
577,110 - AZOBR_RS02755 0.26 -0.3
577,206 + AZOBR_RS02755 0.31 -0.2
577,207 - AZOBR_RS02755 0.31 -1.7
577,207 - AZOBR_RS02755 0.31 -0.5
577,220 + AZOBR_RS02755 0.31 +0.4
577,220 + AZOBR_RS02755 0.31 -1.1
577,220 + AZOBR_RS02755 0.31 +0.0
577,221 - AZOBR_RS02755 0.31 +0.3
577,288 + AZOBR_RS02755 0.34 +0.0
577,288 + AZOBR_RS02755 0.34 +0.3
577,289 - AZOBR_RS02755 0.34 +1.1
577,308 + AZOBR_RS02755 0.35 +0.3
577,308 + AZOBR_RS02755 0.35 +0.5
577,392 - AZOBR_RS02755 0.39 -0.0
577,392 - AZOBR_RS02755 0.39 +0.1

Or see this region's nucleotide sequence