Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26890

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26885 and AO353_26890 are separated by 83 nucleotidesAO353_26890 and AO353_26895 are separated by 40 nucleotides AO353_26885: AO353_26885 - phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data), at 5,893,454 to 5,894,440 _26885 AO353_26890: AO353_26890 - aspartate aminotransferase, at 5,894,524 to 5,895,711 _26890 AO353_26895: AO353_26895 - chemotaxis protein, at 5,895,752 to 5,897,377 _26895 Position (kb) 5894 5895 5896Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5893.691 kb on + strand, within AO353_26885at 5893.691 kb on + strand, within AO353_26885at 5893.692 kb on - strand, within AO353_26885at 5893.692 kb on - strand, within AO353_26885at 5893.692 kb on - strand, within AO353_26885at 5893.692 kb on - strand, within AO353_26885at 5893.692 kb on - strand, within AO353_26885at 5893.704 kb on - strand, within AO353_26885at 5893.881 kb on + strand, within AO353_26885at 5893.881 kb on + strand, within AO353_26885at 5893.882 kb on - strand, within AO353_26885at 5893.882 kb on - strand, within AO353_26885at 5893.882 kb on - strand, within AO353_26885at 5893.882 kb on - strand, within AO353_26885at 5893.882 kb on - strand, within AO353_26885at 5893.882 kb on - strandat 5893.882 kb on - strand, within AO353_26885at 5893.882 kb on - strand, within AO353_26885at 5893.882 kb on - strand, within AO353_26885at 5893.984 kb on + strand, within AO353_26885at 5893.985 kb on - strand, within AO353_26885at 5894.143 kb on + strand, within AO353_26885at 5894.143 kb on + strand, within AO353_26885at 5894.143 kb on + strand, within AO353_26885at 5894.144 kb on - strand, within AO353_26885at 5894.149 kb on + strand, within AO353_26885at 5894.149 kb on + strand, within AO353_26885at 5894.149 kb on + strand, within AO353_26885at 5894.150 kb on - strand, within AO353_26885at 5894.155 kb on + strand, within AO353_26885at 5894.155 kb on + strand, within AO353_26885at 5894.155 kb on + strand, within AO353_26885at 5894.155 kb on + strand, within AO353_26885at 5894.156 kb on - strand, within AO353_26885at 5894.156 kb on - strand, within AO353_26885at 5894.438 kb on + strandat 5894.438 kb on + strandat 5894.500 kb on + strandat 5894.500 kb on + strandat 5894.501 kb on - strandat 5894.507 kb on + strandat 5894.507 kb on + strandat 5894.507 kb on + strandat 5894.676 kb on - strand, within AO353_26890at 5894.826 kb on - strand, within AO353_26890at 5895.027 kb on + strand, within AO353_26890at 5895.027 kb on + strand, within AO353_26890at 5895.077 kb on + strand, within AO353_26890at 5895.077 kb on + strand, within AO353_26890at 5895.077 kb on + strand, within AO353_26890at 5895.077 kb on + strand, within AO353_26890at 5895.077 kb on + strand, within AO353_26890at 5895.077 kb on + strand, within AO353_26890at 5895.077 kb on + strand, within AO353_26890at 5895.077 kb on + strand, within AO353_26890at 5895.077 kb on + strand, within AO353_26890at 5895.077 kb on + strand, within AO353_26890at 5895.077 kb on + strand, within AO353_26890at 5895.078 kb on - strand, within AO353_26890at 5895.078 kb on - strand, within AO353_26890at 5895.078 kb on - strand, within AO353_26890at 5895.078 kb on - strand, within AO353_26890at 5895.078 kb on - strand, within AO353_26890at 5895.078 kb on - strand, within AO353_26890at 5895.078 kb on - strand, within AO353_26890at 5895.078 kb on - strand, within AO353_26890at 5895.078 kb on - strand, within AO353_26890at 5895.079 kb on + strandat 5895.079 kb on + strand, within AO353_26890at 5895.079 kb on + strand, within AO353_26890at 5895.079 kb on + strand, within AO353_26890at 5895.079 kb on + strand, within AO353_26890at 5895.080 kb on - strand, within AO353_26890at 5895.080 kb on - strand, within AO353_26890at 5895.080 kb on - strand, within AO353_26890at 5895.080 kb on - strand, within AO353_26890at 5895.080 kb on - strand, within AO353_26890at 5895.080 kb on - strand, within AO353_26890at 5895.080 kb on - strand, within AO353_26890at 5895.080 kb on - strand, within AO353_26890at 5895.092 kb on + strand, within AO353_26890at 5895.326 kb on + strand, within AO353_26890at 5895.326 kb on + strand, within AO353_26890at 5895.326 kb on + strand, within AO353_26890at 5895.326 kb on + strand, within AO353_26890at 5895.326 kb on + strand, within AO353_26890at 5895.326 kb on + strand, within AO353_26890at 5895.326 kb on + strand, within AO353_26890at 5895.326 kb on + strand, within AO353_26890at 5895.327 kb on - strand, within AO353_26890at 5895.327 kb on - strand, within AO353_26890at 5895.327 kb on - strand, within AO353_26890at 5895.327 kb on - strand, within AO353_26890at 5895.327 kb on - strand, within AO353_26890at 5895.327 kb on - strand, within AO353_26890at 5895.327 kb on - strand, within AO353_26890at 5895.327 kb on - strand, within AO353_26890at 5895.327 kb on - strand, within AO353_26890at 5895.327 kb on - strand, within AO353_26890at 5895.335 kb on + strand, within AO353_26890at 5895.335 kb on + strand, within AO353_26890at 5895.335 kb on + strand, within AO353_26890at 5895.335 kb on + strand, within AO353_26890at 5895.335 kb on + strand, within AO353_26890at 5895.335 kb on + strand, within AO353_26890at 5895.335 kb on + strand, within AO353_26890at 5895.336 kb on - strand, within AO353_26890at 5895.336 kb on - strand, within AO353_26890at 5895.336 kb on - strand, within AO353_26890at 5895.336 kb on - strand, within AO353_26890at 5895.336 kb on - strand, within AO353_26890at 5895.336 kb on - strand, within AO353_26890at 5895.336 kb on - strand, within AO353_26890at 5895.336 kb on - strand, within AO353_26890at 5895.395 kb on + strand, within AO353_26890at 5895.395 kb on + strand, within AO353_26890at 5895.395 kb on + strand, within AO353_26890at 5895.396 kb on - strand, within AO353_26890at 5895.509 kb on - strand, within AO353_26890at 5895.525 kb on + strand, within AO353_26890at 5895.526 kb on - strand, within AO353_26890at 5895.526 kb on - strand, within AO353_26890at 5895.705 kb on - strandat 5895.713 kb on + strandat 5895.713 kb on + strandat 5895.713 kb on + strandat 5895.713 kb on + strandat 5895.713 kb on + strandat 5895.713 kb on + strandat 5895.713 kb on + strandat 5895.713 kb on + strandat 5895.714 kb on - strandat 5895.714 kb on - strandat 5895.714 kb on - strandat 5895.748 kb on + strandat 5895.748 kb on + strandat 5895.749 kb on - strandat 5895.749 kb on - strandat 5896.208 kb on - strand, within AO353_26895at 5896.316 kb on + strand, within AO353_26895at 5896.316 kb on + strand, within AO353_26895at 5896.316 kb on + strand, within AO353_26895at 5896.316 kb on + strand, within AO353_26895at 5896.316 kb on + strand, within AO353_26895at 5896.316 kb on + strand, within AO353_26895at 5896.317 kb on - strand, within AO353_26895at 5896.317 kb on - strand, within AO353_26895at 5896.317 kb on - strand, within AO353_26895at 5896.317 kb on - strand, within AO353_26895at 5896.317 kb on - strand, within AO353_26895at 5896.426 kb on + strand, within AO353_26895at 5896.427 kb on - strand, within AO353_26895

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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5,893,691 + AO353_26885 0.24 -0.5
5,893,691 + AO353_26885 0.24 +0.2
5,893,692 - AO353_26885 0.24 -0.4
5,893,692 - AO353_26885 0.24 +1.2
5,893,692 - AO353_26885 0.24 +0.3
5,893,692 - AO353_26885 0.24 -0.8
5,893,692 - AO353_26885 0.24 -1.1
5,893,704 - AO353_26885 0.25 +0.0
5,893,881 + AO353_26885 0.43 -1.1
5,893,881 + AO353_26885 0.43 +0.2
5,893,882 - AO353_26885 0.43 +0.0
5,893,882 - AO353_26885 0.43 +0.2
5,893,882 - AO353_26885 0.43 -0.0
5,893,882 - AO353_26885 0.43 -0.4
5,893,882 - AO353_26885 0.43 +0.6
5,893,882 - +2.2
5,893,882 - AO353_26885 0.43 +0.6
5,893,882 - AO353_26885 0.43 +0.5
5,893,882 - AO353_26885 0.43 -2.2
5,893,984 + AO353_26885 0.54 -1.1
5,893,985 - AO353_26885 0.54 -2.1
5,894,143 + AO353_26885 0.70 -1.8
5,894,143 + AO353_26885 0.70 +1.6
5,894,143 + AO353_26885 0.70 +1.4
5,894,144 - AO353_26885 0.70 -1.2
5,894,149 + AO353_26885 0.70 -2.1
5,894,149 + AO353_26885 0.70 -0.6
5,894,149 + AO353_26885 0.70 -0.7
5,894,150 - AO353_26885 0.71 +1.2
5,894,155 + AO353_26885 0.71 +1.3
5,894,155 + AO353_26885 0.71 -1.1
5,894,155 + AO353_26885 0.71 -0.1
5,894,155 + AO353_26885 0.71 +0.2
5,894,156 - AO353_26885 0.71 -0.4
5,894,156 - AO353_26885 0.71 -0.6
5,894,438 + -1.5
5,894,438 + +0.2
5,894,500 + -0.9
5,894,500 + +1.2
5,894,501 - -1.0
5,894,507 + +1.4
5,894,507 + -2.3
5,894,507 + +0.4
5,894,676 - AO353_26890 0.13 -1.8
5,894,826 - AO353_26890 0.25 -0.8
5,895,027 + AO353_26890 0.42 -0.1
5,895,027 + AO353_26890 0.42 -0.5
5,895,077 + AO353_26890 0.47 -2.2
5,895,077 + AO353_26890 0.47 -0.7
5,895,077 + AO353_26890 0.47 +0.5
5,895,077 + AO353_26890 0.47 +0.1
5,895,077 + AO353_26890 0.47 -0.1
5,895,077 + AO353_26890 0.47 -1.7
5,895,077 + AO353_26890 0.47 -0.8
5,895,077 + AO353_26890 0.47 -0.8
5,895,077 + AO353_26890 0.47 +1.2
5,895,077 + AO353_26890 0.47 +0.5
5,895,077 + AO353_26890 0.47 -0.6
5,895,078 - AO353_26890 0.47 +0.0
5,895,078 - AO353_26890 0.47 -2.5
5,895,078 - AO353_26890 0.47 -0.3
5,895,078 - AO353_26890 0.47 +0.5
5,895,078 - AO353_26890 0.47 -1.0
5,895,078 - AO353_26890 0.47 +0.4
5,895,078 - AO353_26890 0.47 -0.2
5,895,078 - AO353_26890 0.47 +0.4
5,895,078 - AO353_26890 0.47 -1.8
5,895,079 + +0.6
5,895,079 + AO353_26890 0.47 -2.4
5,895,079 + AO353_26890 0.47 +1.6
5,895,079 + AO353_26890 0.47 +0.2
5,895,079 + AO353_26890 0.47 -1.2
5,895,080 - AO353_26890 0.47 -2.3
5,895,080 - AO353_26890 0.47 -0.2
5,895,080 - AO353_26890 0.47 -0.2
5,895,080 - AO353_26890 0.47 +0.9
5,895,080 - AO353_26890 0.47 +0.1
5,895,080 - AO353_26890 0.47 +0.4
5,895,080 - AO353_26890 0.47 +0.8
5,895,080 - AO353_26890 0.47 +0.1
5,895,092 + AO353_26890 0.48 -1.5
5,895,326 + AO353_26890 0.68 -0.6
5,895,326 + AO353_26890 0.68 -0.4
5,895,326 + AO353_26890 0.68 -1.1
5,895,326 + AO353_26890 0.68 -0.5
5,895,326 + AO353_26890 0.68 -0.8
5,895,326 + AO353_26890 0.68 +1.5
5,895,326 + AO353_26890 0.68 +0.2
5,895,326 + AO353_26890 0.68 +1.6
5,895,327 - AO353_26890 0.68 -0.1
5,895,327 - AO353_26890 0.68 +1.6
5,895,327 - AO353_26890 0.68 -0.9
5,895,327 - AO353_26890 0.68 +1.9
5,895,327 - AO353_26890 0.68 -1.7
5,895,327 - AO353_26890 0.68 +0.6
5,895,327 - AO353_26890 0.68 -1.5
5,895,327 - AO353_26890 0.68 +1.6
5,895,327 - AO353_26890 0.68 -1.4
5,895,327 - AO353_26890 0.68 -0.6
5,895,335 + AO353_26890 0.68 +1.6
5,895,335 + AO353_26890 0.68 +0.5
5,895,335 + AO353_26890 0.68 +1.3
5,895,335 + AO353_26890 0.68 -0.9
5,895,335 + AO353_26890 0.68 -1.9
5,895,335 + AO353_26890 0.68 -0.1
5,895,335 + AO353_26890 0.68 +0.8
5,895,336 - AO353_26890 0.68 -2.3
5,895,336 - AO353_26890 0.68 -0.1
5,895,336 - AO353_26890 0.68 -0.9
5,895,336 - AO353_26890 0.68 +0.1
5,895,336 - AO353_26890 0.68 -1.5
5,895,336 - AO353_26890 0.68 +0.6
5,895,336 - AO353_26890 0.68 +0.4
5,895,336 - AO353_26890 0.68 -1.5
5,895,395 + AO353_26890 0.73 +0.1
5,895,395 + AO353_26890 0.73 +0.2
5,895,395 + AO353_26890 0.73 -1.9
5,895,396 - AO353_26890 0.73 +1.2
5,895,509 - AO353_26890 0.83 +0.6
5,895,525 + AO353_26890 0.84 +0.8
5,895,526 - AO353_26890 0.84 -0.6
5,895,526 - AO353_26890 0.84 +0.3
5,895,705 - +0.2
5,895,713 + -0.8
5,895,713 + +0.3
5,895,713 + -1.1
5,895,713 + -1.2
5,895,713 + -2.8
5,895,713 + -0.9
5,895,713 + -0.1
5,895,713 + -1.6
5,895,714 - +1.0
5,895,714 - +0.8
5,895,714 - +0.5
5,895,748 + +1.2
5,895,748 + -0.8
5,895,749 - -1.4
5,895,749 - +1.2
5,896,208 - AO353_26895 0.28 -1.8
5,896,316 + AO353_26895 0.35 -0.2
5,896,316 + AO353_26895 0.35 -0.3
5,896,316 + AO353_26895 0.35 +0.7
5,896,316 + AO353_26895 0.35 +0.1
5,896,316 + AO353_26895 0.35 +2.2
5,896,316 + AO353_26895 0.35 +0.2
5,896,317 - AO353_26895 0.35 +0.2
5,896,317 - AO353_26895 0.35 +1.2
5,896,317 - AO353_26895 0.35 -0.6
5,896,317 - AO353_26895 0.35 +0.2
5,896,317 - AO353_26895 0.35 +1.2
5,896,426 + AO353_26895 0.41 -0.3
5,896,427 - AO353_26895 0.42 +0.6

Or see this region's nucleotide sequence