Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26865 and AO353_26870 are separated by 198 nucleotides AO353_26870 and AO353_26875 overlap by 8 nucleotides
AO353_26865: AO353_26865 - transcriptional regulator, at 5,889,146 to 5,890,126
_26865
AO353_26870: AO353_26870 - AP endonuclease, at 5,890,325 to 5,891,107
_26870
AO353_26875: AO353_26875 - 2-dehydro-3-deoxygluconokinase, at 5,891,100 to 5,892,080
_26875
Position (kb) 5890
5891
5892 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5889.479 kb on + strand, within AO353_26865 at 5889.479 kb on + strand, within AO353_26865 at 5889.479 kb on + strand, within AO353_26865 at 5889.480 kb on - strand, within AO353_26865 at 5889.959 kb on + strand, within AO353_26865 at 5889.982 kb on + strand, within AO353_26865 at 5889.983 kb on - strand, within AO353_26865 at 5890.193 kb on + strand at 5890.193 kb on + strand at 5890.193 kb on + strand at 5890.194 kb on - strand at 5890.194 kb on - strand at 5890.194 kb on - strand at 5890.194 kb on - strand at 5890.203 kb on - strand at 5890.203 kb on - strand at 5890.220 kb on - strand at 5890.330 kb on + strand at 5890.330 kb on + strand at 5890.330 kb on + strand at 5890.330 kb on + strand at 5890.330 kb on + strand at 5890.331 kb on - strand at 5890.331 kb on - strand at 5890.676 kb on + strand, within AO353_26870 at 5890.677 kb on - strand, within AO353_26870 at 5890.877 kb on + strand, within AO353_26870 at 5890.877 kb on + strand, within AO353_26870 at 5890.878 kb on - strand, within AO353_26870 at 5890.878 kb on - strand, within AO353_26870 at 5891.082 kb on + strand at 5891.082 kb on + strand at 5891.082 kb on + strand at 5891.083 kb on - strand at 5891.083 kb on - strand at 5891.083 kb on - strand at 5891.083 kb on - strand at 5891.217 kb on - strand, within AO353_26875 at 5891.217 kb on - strand, within AO353_26875 at 5891.217 kb on - strand, within AO353_26875 at 5891.377 kb on + strand, within AO353_26875 at 5891.377 kb on + strand, within AO353_26875 at 5891.378 kb on - strand, within AO353_26875 at 5891.378 kb on - strand, within AO353_26875 at 5891.378 kb on - strand, within AO353_26875 at 5891.418 kb on + strand, within AO353_26875 at 5891.418 kb on + strand, within AO353_26875 at 5891.418 kb on + strand, within AO353_26875 at 5891.748 kb on + strand, within AO353_26875 at 5891.749 kb on - strand, within AO353_26875 at 5891.802 kb on + strand, within AO353_26875 at 5891.802 kb on + strand, within AO353_26875 at 5891.802 kb on + strand, within AO353_26875 at 5891.802 kb on + strand, within AO353_26875 at 5891.802 kb on + strand, within AO353_26875 at 5891.803 kb on - strand, within AO353_26875 at 5891.803 kb on - strand, within AO353_26875 at 5891.803 kb on - strand, within AO353_26875 at 5891.833 kb on + strand, within AO353_26875
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 5,889,479 + AO353_26865 0.34 -0.1 5,889,479 + AO353_26865 0.34 -1.5 5,889,479 + AO353_26865 0.34 +0.4 5,889,480 - AO353_26865 0.34 -1.5 5,889,959 + AO353_26865 0.83 -0.2 5,889,982 + AO353_26865 0.85 +0.1 5,889,983 - AO353_26865 0.85 -0.9 5,890,193 + +0.3 5,890,193 + -1.7 5,890,193 + +0.6 5,890,194 - -1.8 5,890,194 - +0.4 5,890,194 - +0.5 5,890,194 - +1.6 5,890,203 - -0.1 5,890,203 - +1.5 5,890,220 - -0.1 5,890,330 + +0.3 5,890,330 + +0.0 5,890,330 + -0.5 5,890,330 + +2.2 5,890,330 + +0.2 5,890,331 - +0.9 5,890,331 - +1.2 5,890,676 + AO353_26870 0.45 -0.4 5,890,677 - AO353_26870 0.45 -1.5 5,890,877 + AO353_26870 0.70 -0.6 5,890,877 + AO353_26870 0.70 -1.4 5,890,878 - AO353_26870 0.71 -1.0 5,890,878 - AO353_26870 0.71 -1.4 5,891,082 + -1.0 5,891,082 + -0.4 5,891,082 + -1.1 5,891,083 - -0.6 5,891,083 - +0.5 5,891,083 - -0.6 5,891,083 - +0.4 5,891,217 - AO353_26875 0.12 +0.2 5,891,217 - AO353_26875 0.12 -0.4 5,891,217 - AO353_26875 0.12 -1.7 5,891,377 + AO353_26875 0.28 -0.4 5,891,377 + AO353_26875 0.28 +0.1 5,891,378 - AO353_26875 0.28 -0.1 5,891,378 - AO353_26875 0.28 -0.7 5,891,378 - AO353_26875 0.28 -0.4 5,891,418 + AO353_26875 0.32 -0.0 5,891,418 + AO353_26875 0.32 +1.0 5,891,418 + AO353_26875 0.32 -0.8 5,891,748 + AO353_26875 0.66 -1.2 5,891,749 - AO353_26875 0.66 -0.5 5,891,802 + AO353_26875 0.72 -1.2 5,891,802 + AO353_26875 0.72 -0.0 5,891,802 + AO353_26875 0.72 +0.2 5,891,802 + AO353_26875 0.72 -1.6 5,891,802 + AO353_26875 0.72 -0.0 5,891,803 - AO353_26875 0.72 -1.2 5,891,803 - AO353_26875 0.72 -0.6 5,891,803 - AO353_26875 0.72 +0.3 5,891,833 + AO353_26875 0.75 -1.1
Or see this region's nucleotide sequence