Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26340 and AO353_26345 are separated by 47 nucleotides AO353_26345 and AO353_26350 are separated by 34 nucleotides AO353_26350 and AO353_26355 are separated by 671 nucleotides
AO353_26340: AO353_26340 - hypothetical protein, at 5,783,074 to 5,783,796
_26340
AO353_26345: AO353_26345 - hypothetical protein, at 5,783,844 to 5,784,101
_26345
AO353_26350: AO353_26350 - peptidase, at 5,784,136 to 5,784,363
_26350
AO353_26355: AO353_26355 - hypothetical protein, at 5,785,035 to 5,785,508
_26355
Position (kb) 5784
5785 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5783.794 kb on + strand at 5783.795 kb on - strand at 5783.795 kb on - strand at 5783.878 kb on + strand, within AO353_26345 at 5783.879 kb on - strand, within AO353_26345 at 5783.879 kb on - strand, within AO353_26345 at 5783.921 kb on + strand, within AO353_26345 at 5783.921 kb on + strand, within AO353_26345 at 5783.922 kb on - strand, within AO353_26345 at 5783.922 kb on - strand, within AO353_26345 at 5783.923 kb on + strand, within AO353_26345 at 5783.923 kb on + strand, within AO353_26345 at 5783.923 kb on + strand, within AO353_26345 at 5783.923 kb on + strand, within AO353_26345 at 5783.923 kb on + strand, within AO353_26345 at 5783.923 kb on + strand, within AO353_26345 at 5783.924 kb on - strand, within AO353_26345 at 5783.924 kb on - strand, within AO353_26345 at 5783.924 kb on - strand, within AO353_26345 at 5783.930 kb on - strand, within AO353_26345 at 5783.986 kb on + strand, within AO353_26345 at 5783.986 kb on + strand, within AO353_26345 at 5783.986 kb on + strand, within AO353_26345 at 5783.986 kb on + strand, within AO353_26345 at 5783.987 kb on - strand, within AO353_26345 at 5783.987 kb on - strand, within AO353_26345 at 5783.990 kb on - strand, within AO353_26345 at 5784.147 kb on + strand at 5784.185 kb on + strand, within AO353_26350 at 5784.185 kb on + strand, within AO353_26350 at 5784.185 kb on + strand, within AO353_26350 at 5784.185 kb on + strand, within AO353_26350 at 5784.185 kb on + strand, within AO353_26350 at 5784.186 kb on - strand, within AO353_26350 at 5784.186 kb on - strand, within AO353_26350 at 5784.186 kb on - strand, within AO353_26350 at 5784.186 kb on - strand, within AO353_26350 at 5784.186 kb on - strand, within AO353_26350 at 5784.186 kb on - strand, within AO353_26350 at 5784.266 kb on + strand, within AO353_26350 at 5784.266 kb on + strand, within AO353_26350 at 5784.272 kb on + strand, within AO353_26350 at 5784.272 kb on + strand, within AO353_26350 at 5784.272 kb on + strand, within AO353_26350 at 5784.273 kb on - strand, within AO353_26350 at 5784.273 kb on - strand, within AO353_26350 at 5784.273 kb on - strand, within AO353_26350 at 5784.286 kb on + strand, within AO353_26350 at 5784.286 kb on + strand, within AO353_26350 at 5784.286 kb on + strand, within AO353_26350 at 5784.287 kb on - strand, within AO353_26350 at 5784.287 kb on - strand, within AO353_26350 at 5784.287 kb on - strand, within AO353_26350 at 5784.362 kb on - strand at 5784.362 kb on - strand at 5784.435 kb on + strand at 5784.435 kb on + strand at 5784.435 kb on + strand at 5784.561 kb on - strand at 5784.607 kb on - strand at 5784.628 kb on + strand at 5784.628 kb on + strand at 5784.628 kb on + strand at 5784.628 kb on + strand at 5784.628 kb on + strand at 5784.628 kb on + strand at 5784.628 kb on + strand at 5784.628 kb on + strand at 5784.628 kb on + strand at 5784.628 kb on + strand at 5784.629 kb on - strand at 5784.629 kb on - strand at 5784.653 kb on + strand at 5784.653 kb on + strand at 5784.654 kb on - strand at 5784.654 kb on - strand at 5784.654 kb on - strand at 5784.654 kb on - strand at 5784.654 kb on - strand at 5784.689 kb on + strand at 5784.689 kb on + strand at 5784.690 kb on - strand at 5784.690 kb on - strand at 5784.738 kb on - strand at 5784.991 kb on - strand at 5785.018 kb on + strand at 5785.019 kb on - strand at 5785.019 kb on - strand at 5785.040 kb on + strand at 5785.040 kb on + strand at 5785.040 kb on + strand at 5785.040 kb on + strand at 5785.041 kb on - strand at 5785.041 kb on - strand at 5785.041 kb on - strand at 5785.041 kb on - strand at 5785.041 kb on - strand at 5785.041 kb on - strand at 5785.051 kb on + strand at 5785.052 kb on - strand at 5785.132 kb on - strand, within AO353_26355 at 5785.146 kb on + strand, within AO353_26355 at 5785.147 kb on - strand, within AO353_26355 at 5785.147 kb on - strand, within AO353_26355 at 5785.147 kb on - strand, within AO353_26355 at 5785.147 kb on - strand, within AO353_26355 at 5785.149 kb on + strand, within AO353_26355 at 5785.150 kb on - strand, within AO353_26355 at 5785.150 kb on - strand, within AO353_26355 at 5785.156 kb on + strand, within AO353_26355 at 5785.187 kb on + strand, within AO353_26355 at 5785.188 kb on - strand, within AO353_26355 at 5785.188 kb on - strand, within AO353_26355 at 5785.188 kb on - strand, within AO353_26355 at 5785.202 kb on - strand at 5785.202 kb on - strand, within AO353_26355 at 5785.270 kb on - strand, within AO353_26355 at 5785.273 kb on + strand, within AO353_26355 at 5785.273 kb on + strand, within AO353_26355 at 5785.273 kb on + strand, within AO353_26355 at 5785.273 kb on + strand, within AO353_26355 at 5785.273 kb on + strand, within AO353_26355 at 5785.274 kb on - strand, within AO353_26355 at 5785.274 kb on - strand, within AO353_26355 at 5785.274 kb on - strand, within AO353_26355 at 5785.274 kb on - strand, within AO353_26355 at 5785.274 kb on - strand, within AO353_26355 at 5785.274 kb on - strand, within AO353_26355 at 5785.274 kb on - strand, within AO353_26355 at 5785.306 kb on + strand, within AO353_26355 at 5785.343 kb on + strand, within AO353_26355 at 5785.343 kb on + strand, within AO353_26355
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 5,783,794 + +0.6 5,783,795 - -0.5 5,783,795 - +0.2 5,783,878 + AO353_26345 0.13 -2.7 5,783,879 - AO353_26345 0.14 +2.2 5,783,879 - AO353_26345 0.14 -0.8 5,783,921 + AO353_26345 0.30 +0.2 5,783,921 + AO353_26345 0.30 -1.5 5,783,922 - AO353_26345 0.30 -1.6 5,783,922 - AO353_26345 0.30 -0.2 5,783,923 + AO353_26345 0.31 +0.6 5,783,923 + AO353_26345 0.31 -1.6 5,783,923 + AO353_26345 0.31 -1.8 5,783,923 + AO353_26345 0.31 -0.6 5,783,923 + AO353_26345 0.31 -2.1 5,783,923 + AO353_26345 0.31 +1.2 5,783,924 - AO353_26345 0.31 -0.9 5,783,924 - AO353_26345 0.31 +0.2 5,783,924 - AO353_26345 0.31 -2.0 5,783,930 - AO353_26345 0.33 -0.3 5,783,986 + AO353_26345 0.55 -0.3 5,783,986 + AO353_26345 0.55 +0.4 5,783,986 + AO353_26345 0.55 -1.3 5,783,986 + AO353_26345 0.55 -0.3 5,783,987 - AO353_26345 0.55 -0.1 5,783,987 - AO353_26345 0.55 +0.4 5,783,990 - AO353_26345 0.57 +2.0 5,784,147 + -0.6 5,784,185 + AO353_26350 0.21 +0.4 5,784,185 + AO353_26350 0.21 +1.2 5,784,185 + AO353_26350 0.21 -1.6 5,784,185 + AO353_26350 0.21 +0.2 5,784,185 + AO353_26350 0.21 -0.1 5,784,186 - AO353_26350 0.22 +1.2 5,784,186 - AO353_26350 0.22 -1.1 5,784,186 - AO353_26350 0.22 -3.4 5,784,186 - AO353_26350 0.22 -0.3 5,784,186 - AO353_26350 0.22 -1.4 5,784,186 - AO353_26350 0.22 -1.7 5,784,266 + AO353_26350 0.57 -0.8 5,784,266 + AO353_26350 0.57 +1.2 5,784,272 + AO353_26350 0.60 +0.7 5,784,272 + AO353_26350 0.60 +0.7 5,784,272 + AO353_26350 0.60 -0.2 5,784,273 - AO353_26350 0.60 -0.3 5,784,273 - AO353_26350 0.60 -1.2 5,784,273 - AO353_26350 0.60 -0.9 5,784,286 + AO353_26350 0.66 +0.5 5,784,286 + AO353_26350 0.66 +1.4 5,784,286 + AO353_26350 0.66 -0.9 5,784,287 - AO353_26350 0.66 -0.3 5,784,287 - AO353_26350 0.66 -1.3 5,784,287 - AO353_26350 0.66 -0.8 5,784,362 - +0.7 5,784,362 - -1.3 5,784,435 + +0.9 5,784,435 + -1.3 5,784,435 + -1.2 5,784,561 - +0.9 5,784,607 - +0.7 5,784,628 + -0.3 5,784,628 + -1.6 5,784,628 + -0.1 5,784,628 + -1.5 5,784,628 + -0.3 5,784,628 + -0.6 5,784,628 + -1.9 5,784,628 + +0.7 5,784,628 + -1.6 5,784,628 + +1.0 5,784,629 - +0.2 5,784,629 - -2.2 5,784,653 + -0.1 5,784,653 + +0.4 5,784,654 - -0.6 5,784,654 - -0.8 5,784,654 - +0.0 5,784,654 - -1.3 5,784,654 - +2.0 5,784,689 + -2.2 5,784,689 + +2.0 5,784,690 - -1.8 5,784,690 - -1.5 5,784,738 - -1.1 5,784,991 - -2.1 5,785,018 + +0.7 5,785,019 - -0.3 5,785,019 - +0.5 5,785,040 + -0.7 5,785,040 + +0.9 5,785,040 + -1.1 5,785,040 + +0.7 5,785,041 - +0.3 5,785,041 - -1.4 5,785,041 - +1.5 5,785,041 - -0.3 5,785,041 - +0.7 5,785,041 - +1.8 5,785,051 + -1.4 5,785,052 - -0.6 5,785,132 - AO353_26355 0.20 -0.9 5,785,146 + AO353_26355 0.23 -0.9 5,785,147 - AO353_26355 0.24 +1.1 5,785,147 - AO353_26355 0.24 +1.3 5,785,147 - AO353_26355 0.24 +0.5 5,785,147 - AO353_26355 0.24 -0.4 5,785,149 + AO353_26355 0.24 -0.3 5,785,150 - AO353_26355 0.24 -1.7 5,785,150 - AO353_26355 0.24 +1.1 5,785,156 + AO353_26355 0.26 +0.9 5,785,187 + AO353_26355 0.32 -0.1 5,785,188 - AO353_26355 0.32 +1.0 5,785,188 - AO353_26355 0.32 -1.3 5,785,188 - AO353_26355 0.32 +0.5 5,785,202 - +0.7 5,785,202 - AO353_26355 0.35 -0.9 5,785,270 - AO353_26355 0.50 +1.0 5,785,273 + AO353_26355 0.50 +0.4 5,785,273 + AO353_26355 0.50 -0.3 5,785,273 + AO353_26355 0.50 -1.0 5,785,273 + AO353_26355 0.50 -0.4 5,785,273 + AO353_26355 0.50 -0.3 5,785,274 - AO353_26355 0.50 -0.6 5,785,274 - AO353_26355 0.50 +0.0 5,785,274 - AO353_26355 0.50 -0.6 5,785,274 - AO353_26355 0.50 +0.1 5,785,274 - AO353_26355 0.50 -0.4 5,785,274 - AO353_26355 0.50 +0.4 5,785,274 - AO353_26355 0.50 +0.3 5,785,306 + AO353_26355 0.57 +0.3 5,785,343 + AO353_26355 0.65 -0.6 5,785,343 + AO353_26355 0.65 +1.3
Or see this region's nucleotide sequence