Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25980

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25975 and AO353_25980 are separated by 92 nucleotidesAO353_25980 and AO353_25985 overlap by 7 nucleotidesAO353_25985 and AO353_25990 are separated by 172 nucleotides AO353_25975: AO353_25975 - carboxylate--amine ligase, at 5,724,367 to 5,725,953 _25975 AO353_25980: AO353_25980 - ribosomal-protein-alanine acetyltransferase, at 5,726,046 to 5,726,549 _25980 AO353_25985: AO353_25985 - hypothetical protein, at 5,726,543 to 5,726,920 _25985 AO353_25990: AO353_25990 - aspartyl beta-hydroxylase, at 5,727,093 to 5,727,992 _25990 Position (kb) 5726 5727Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5725.077 kb on - strand, within AO353_25975at 5725.080 kb on + strand, within AO353_25975at 5725.080 kb on + strandat 5725.080 kb on + strand, within AO353_25975at 5725.080 kb on + strand, within AO353_25975at 5725.081 kb on - strand, within AO353_25975at 5725.081 kb on - strand, within AO353_25975at 5725.081 kb on - strand, within AO353_25975at 5725.081 kb on - strand, within AO353_25975at 5725.081 kb on - strand, within AO353_25975at 5725.081 kb on - strand, within AO353_25975at 5725.081 kb on - strand, within AO353_25975at 5725.124 kb on + strand, within AO353_25975at 5725.124 kb on + strand, within AO353_25975at 5725.125 kb on - strand, within AO353_25975at 5725.142 kb on + strand, within AO353_25975at 5725.142 kb on + strand, within AO353_25975at 5725.143 kb on - strand, within AO353_25975at 5725.365 kb on + strand, within AO353_25975at 5725.366 kb on - strand, within AO353_25975at 5725.366 kb on - strand, within AO353_25975at 5725.366 kb on - strand, within AO353_25975at 5725.366 kb on - strand, within AO353_25975at 5725.384 kb on + strand, within AO353_25975at 5725.506 kb on - strand, within AO353_25975at 5725.518 kb on + strand, within AO353_25975at 5725.598 kb on + strand, within AO353_25975at 5725.599 kb on - strand, within AO353_25975at 5725.599 kb on - strand, within AO353_25975at 5725.682 kb on + strand, within AO353_25975at 5725.682 kb on + strand, within AO353_25975at 5725.683 kb on - strand, within AO353_25975at 5725.683 kb on - strand, within AO353_25975at 5725.685 kb on + strand, within AO353_25975at 5725.686 kb on - strand, within AO353_25975at 5725.686 kb on - strand, within AO353_25975at 5725.686 kb on - strand, within AO353_25975at 5725.700 kb on + strand, within AO353_25975at 5725.701 kb on - strand, within AO353_25975at 5725.701 kb on - strand, within AO353_25975at 5725.706 kb on + strand, within AO353_25975at 5725.706 kb on + strand, within AO353_25975at 5725.706 kb on + strand, within AO353_25975at 5725.707 kb on - strand, within AO353_25975at 5725.707 kb on - strand, within AO353_25975at 5725.726 kb on + strand, within AO353_25975at 5725.772 kb on + strand, within AO353_25975at 5725.773 kb on - strand, within AO353_25975at 5725.809 kb on - strandat 5725.809 kb on - strandat 5725.880 kb on + strandat 5725.880 kb on + strandat 5725.881 kb on - strandat 5725.990 kb on + strandat 5725.991 kb on - strandat 5726.034 kb on + strandat 5726.045 kb on + strandat 5726.046 kb on - strandat 5726.046 kb on - strandat 5726.133 kb on - strand, within AO353_25980at 5726.403 kb on + strandat 5726.404 kb on - strand, within AO353_25980at 5726.404 kb on - strand, within AO353_25980at 5726.404 kb on - strand, within AO353_25980at 5726.411 kb on + strand, within AO353_25980at 5726.411 kb on + strand, within AO353_25980at 5726.445 kb on + strand, within AO353_25980at 5726.445 kb on + strand, within AO353_25980at 5726.448 kb on + strand, within AO353_25980at 5726.448 kb on + strand, within AO353_25980at 5726.448 kb on + strand, within AO353_25980at 5726.448 kb on + strand, within AO353_25980at 5726.449 kb on - strand, within AO353_25980at 5726.449 kb on - strand, within AO353_25980at 5726.449 kb on - strand, within AO353_25980at 5726.449 kb on - strand, within AO353_25980at 5726.449 kb on - strand, within AO353_25980at 5726.547 kb on + strandat 5726.547 kb on + strandat 5726.548 kb on - strandat 5726.590 kb on + strand, within AO353_25985at 5726.591 kb on - strand, within AO353_25985at 5726.592 kb on + strand, within AO353_25985at 5726.593 kb on - strand, within AO353_25985at 5726.593 kb on - strand, within AO353_25985at 5726.593 kb on - strand, within AO353_25985at 5726.766 kb on + strand, within AO353_25985at 5726.766 kb on + strand, within AO353_25985at 5726.767 kb on - strand, within AO353_25985at 5726.767 kb on - strand, within AO353_25985at 5726.937 kb on + strandat 5726.937 kb on + strandat 5726.937 kb on + strandat 5726.937 kb on + strandat 5726.937 kb on + strandat 5726.938 kb on - strandat 5726.947 kb on + strandat 5726.947 kb on + strandat 5726.994 kb on + strandat 5726.994 kb on + strandat 5726.994 kb on + strandat 5726.994 kb on + strandat 5726.994 kb on + strandat 5726.994 kb on + strandat 5726.994 kb on + strandat 5726.994 kb on + strandat 5726.995 kb on - strandat 5726.995 kb on - strandat 5726.997 kb on + strandat 5726.997 kb on + strandat 5726.997 kb on + strandat 5726.997 kb on + strandat 5726.997 kb on + strandat 5726.998 kb on - strandat 5726.998 kb on - strandat 5726.998 kb on - strandat 5727.029 kb on + strandat 5727.029 kb on + strandat 5727.030 kb on - strandat 5727.030 kb on - strandat 5727.030 kb on - strandat 5727.102 kb on + strandat 5727.102 kb on + strandat 5727.148 kb on + strandat 5727.149 kb on - strandat 5727.149 kb on - strandat 5727.149 kb on - strandat 5727.149 kb on - strandat 5727.225 kb on + strand, within AO353_25990at 5727.226 kb on - strand, within AO353_25990at 5727.226 kb on - strandat 5727.319 kb on + strand, within AO353_25990at 5727.320 kb on - strand, within AO353_25990at 5727.394 kb on + strand, within AO353_25990at 5727.394 kb on + strand, within AO353_25990at 5727.394 kb on + strand, within AO353_25990at 5727.395 kb on - strand, within AO353_25990at 5727.395 kb on - strand, within AO353_25990at 5727.395 kb on - strand, within AO353_25990at 5727.395 kb on - strand, within AO353_25990at 5727.460 kb on + strand, within AO353_25990at 5727.461 kb on - strand, within AO353_25990at 5727.461 kb on - strand, within AO353_25990at 5727.461 kb on - strand, within AO353_25990at 5727.499 kb on + strand, within AO353_25990at 5727.506 kb on - strand, within AO353_25990

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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5,725,077 - AO353_25975 0.45 -0.1
5,725,080 + AO353_25975 0.45 -0.6
5,725,080 + +0.9
5,725,080 + AO353_25975 0.45 -0.9
5,725,080 + AO353_25975 0.45 +1.8
5,725,081 - AO353_25975 0.45 -0.1
5,725,081 - AO353_25975 0.45 -2.3
5,725,081 - AO353_25975 0.45 +1.6
5,725,081 - AO353_25975 0.45 +0.1
5,725,081 - AO353_25975 0.45 -0.5
5,725,081 - AO353_25975 0.45 -0.4
5,725,081 - AO353_25975 0.45 -0.6
5,725,124 + AO353_25975 0.48 -1.2
5,725,124 + AO353_25975 0.48 -1.3
5,725,125 - AO353_25975 0.48 -1.6
5,725,142 + AO353_25975 0.49 -1.7
5,725,142 + AO353_25975 0.49 -0.1
5,725,143 - AO353_25975 0.49 +0.9
5,725,365 + AO353_25975 0.63 -0.8
5,725,366 - AO353_25975 0.63 -0.5
5,725,366 - AO353_25975 0.63 +0.4
5,725,366 - AO353_25975 0.63 -0.6
5,725,366 - AO353_25975 0.63 +0.1
5,725,384 + AO353_25975 0.64 -0.6
5,725,506 - AO353_25975 0.72 +0.2
5,725,518 + AO353_25975 0.73 -1.6
5,725,598 + AO353_25975 0.78 +1.0
5,725,599 - AO353_25975 0.78 -1.1
5,725,599 - AO353_25975 0.78 -1.3
5,725,682 + AO353_25975 0.83 -1.9
5,725,682 + AO353_25975 0.83 -0.1
5,725,683 - AO353_25975 0.83 +0.3
5,725,683 - AO353_25975 0.83 -0.9
5,725,685 + AO353_25975 0.83 -1.0
5,725,686 - AO353_25975 0.83 -0.8
5,725,686 - AO353_25975 0.83 +0.6
5,725,686 - AO353_25975 0.83 +1.0
5,725,700 + AO353_25975 0.84 -1.5
5,725,701 - AO353_25975 0.84 +1.7
5,725,701 - AO353_25975 0.84 -1.5
5,725,706 + AO353_25975 0.84 -1.6
5,725,706 + AO353_25975 0.84 -0.8
5,725,706 + AO353_25975 0.84 +3.0
5,725,707 - AO353_25975 0.84 -2.0
5,725,707 - AO353_25975 0.84 -2.1
5,725,726 + AO353_25975 0.86 +1.4
5,725,772 + AO353_25975 0.89 +2.2
5,725,773 - AO353_25975 0.89 +0.3
5,725,809 - -0.8
5,725,809 - +1.2
5,725,880 + +2.6
5,725,880 + -1.3
5,725,881 - +2.2
5,725,990 + -2.1
5,725,991 - -1.6
5,726,034 + -0.4
5,726,045 + +0.0
5,726,046 - +0.2
5,726,046 - +0.2
5,726,133 - AO353_25980 0.17 +0.2
5,726,403 + -0.8
5,726,404 - AO353_25980 0.71 -0.0
5,726,404 - AO353_25980 0.71 -1.6
5,726,404 - AO353_25980 0.71 -1.4
5,726,411 + AO353_25980 0.72 -1.0
5,726,411 + AO353_25980 0.72 -0.1
5,726,445 + AO353_25980 0.79 -0.4
5,726,445 + AO353_25980 0.79 -1.0
5,726,448 + AO353_25980 0.80 +0.0
5,726,448 + AO353_25980 0.80 +0.5
5,726,448 + AO353_25980 0.80 -3.0
5,726,448 + AO353_25980 0.80 +0.2
5,726,449 - AO353_25980 0.80 +0.2
5,726,449 - AO353_25980 0.80 -1.5
5,726,449 - AO353_25980 0.80 -2.2
5,726,449 - AO353_25980 0.80 -0.8
5,726,449 - AO353_25980 0.80 -1.4
5,726,547 + -0.4
5,726,547 + +0.6
5,726,548 - +1.3
5,726,590 + AO353_25985 0.12 -1.4
5,726,591 - AO353_25985 0.13 -0.7
5,726,592 + AO353_25985 0.13 +2.0
5,726,593 - AO353_25985 0.13 +1.1
5,726,593 - AO353_25985 0.13 +1.0
5,726,593 - AO353_25985 0.13 +0.1
5,726,766 + AO353_25985 0.59 -0.6
5,726,766 + AO353_25985 0.59 -1.5
5,726,767 - AO353_25985 0.59 +0.3
5,726,767 - AO353_25985 0.59 -1.6
5,726,937 + -0.8
5,726,937 + -0.2
5,726,937 + +0.6
5,726,937 + +0.1
5,726,937 + -0.7
5,726,938 - +1.9
5,726,947 + +2.2
5,726,947 + +0.4
5,726,994 + -0.1
5,726,994 + +1.5
5,726,994 + +0.7
5,726,994 + +0.6
5,726,994 + -1.1
5,726,994 + -0.7
5,726,994 + +2.2
5,726,994 + -1.1
5,726,995 - +0.1
5,726,995 - -0.1
5,726,997 + -1.1
5,726,997 + -0.5
5,726,997 + +2.2
5,726,997 + -0.4
5,726,997 + -1.9
5,726,998 - +1.2
5,726,998 - -1.0
5,726,998 - -0.8
5,727,029 + -0.4
5,727,029 + -0.5
5,727,030 - +0.1
5,727,030 - +0.5
5,727,030 - +0.6
5,727,102 + -1.3
5,727,102 + -2.6
5,727,148 + +0.1
5,727,149 - -0.7
5,727,149 - -0.8
5,727,149 - -0.9
5,727,149 - -1.1
5,727,225 + AO353_25990 0.15 -0.5
5,727,226 - AO353_25990 0.15 -0.2
5,727,226 - +1.2
5,727,319 + AO353_25990 0.25 -0.4
5,727,320 - AO353_25990 0.25 -1.6
5,727,394 + AO353_25990 0.33 -2.1
5,727,394 + AO353_25990 0.33 -2.5
5,727,394 + AO353_25990 0.33 -0.4
5,727,395 - AO353_25990 0.34 +0.2
5,727,395 - AO353_25990 0.34 -0.8
5,727,395 - AO353_25990 0.34 +0.2
5,727,395 - AO353_25990 0.34 -0.4
5,727,460 + AO353_25990 0.41 -0.8
5,727,461 - AO353_25990 0.41 +0.1
5,727,461 - AO353_25990 0.41 -1.3
5,727,461 - AO353_25990 0.41 -0.3
5,727,499 + AO353_25990 0.45 -0.1
5,727,506 - AO353_25990 0.46 -1.3

Or see this region's nucleotide sequence