Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_25805 and AO353_25810 are separated by 65 nucleotides AO353_25810 and AO353_25815 are separated by 344 nucleotides AO353_25815 and AO353_25820 are separated by 281 nucleotides
AO353_25805: AO353_25805 - hypothetical protein, at 5,686,973 to 5,688,247
_25805
AO353_25810: AO353_25810 - Fis family transcriptional regulator, at 5,688,313 to 5,689,638
_25810
AO353_25815: AO353_25815 - hypothetical protein, at 5,689,983 to 5,690,249
_25815
AO353_25820: AO353_25820 - hypothetical protein, at 5,690,531 to 5,691,820
_25820
Position (kb) 5688
5689
5690 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5687.315 kb on + strand, within AO353_25805 at 5687.315 kb on + strand, within AO353_25805 at 5687.316 kb on - strand, within AO353_25805 at 5687.375 kb on + strand, within AO353_25805 at 5687.375 kb on + strand, within AO353_25805 at 5687.375 kb on + strand, within AO353_25805 at 5687.375 kb on + strand, within AO353_25805 at 5687.375 kb on + strand, within AO353_25805 at 5687.375 kb on + strand at 5687.375 kb on + strand, within AO353_25805 at 5687.375 kb on + strand, within AO353_25805 at 5687.375 kb on + strand, within AO353_25805 at 5687.376 kb on - strand at 5687.376 kb on - strand at 5687.376 kb on - strand, within AO353_25805 at 5687.376 kb on - strand, within AO353_25805 at 5687.376 kb on - strand, within AO353_25805 at 5687.376 kb on - strand, within AO353_25805 at 5687.376 kb on - strand, within AO353_25805 at 5687.376 kb on - strand, within AO353_25805 at 5687.376 kb on - strand, within AO353_25805 at 5687.376 kb on - strand, within AO353_25805 at 5687.376 kb on - strand, within AO353_25805 at 5687.376 kb on - strand, within AO353_25805 at 5687.384 kb on + strand, within AO353_25805 at 5687.502 kb on - strand, within AO353_25805 at 5687.564 kb on + strand, within AO353_25805 at 5687.564 kb on + strand, within AO353_25805 at 5687.564 kb on + strand, within AO353_25805 at 5687.565 kb on - strand, within AO353_25805 at 5687.565 kb on - strand, within AO353_25805 at 5687.565 kb on - strand, within AO353_25805 at 5687.565 kb on - strand, within AO353_25805 at 5687.565 kb on - strand, within AO353_25805 at 5687.565 kb on - strand, within AO353_25805 at 5687.565 kb on - strand, within AO353_25805 at 5687.565 kb on - strand, within AO353_25805 at 5687.565 kb on - strand, within AO353_25805 at 5687.635 kb on - strand, within AO353_25805 at 5687.653 kb on + strand, within AO353_25805 at 5687.654 kb on - strand, within AO353_25805 at 5687.660 kb on + strand, within AO353_25805 at 5687.660 kb on + strand, within AO353_25805 at 5687.660 kb on + strand, within AO353_25805 at 5687.661 kb on - strand, within AO353_25805 at 5687.661 kb on - strand, within AO353_25805 at 5687.661 kb on - strand, within AO353_25805 at 5687.661 kb on - strand, within AO353_25805 at 5687.661 kb on - strand, within AO353_25805 at 5687.661 kb on - strand, within AO353_25805 at 5687.661 kb on - strand, within AO353_25805 at 5687.788 kb on - strand, within AO353_25805 at 5687.888 kb on + strand, within AO353_25805 at 5687.888 kb on + strand, within AO353_25805 at 5687.888 kb on + strand, within AO353_25805 at 5687.888 kb on + strand, within AO353_25805 at 5687.888 kb on + strand, within AO353_25805 at 5687.888 kb on + strand, within AO353_25805 at 5687.888 kb on + strand, within AO353_25805 at 5687.889 kb on - strand, within AO353_25805 at 5687.889 kb on - strand, within AO353_25805 at 5687.889 kb on - strand, within AO353_25805 at 5687.890 kb on + strand, within AO353_25805 at 5687.890 kb on + strand, within AO353_25805 at 5687.890 kb on + strand, within AO353_25805 at 5687.891 kb on - strand, within AO353_25805 at 5687.891 kb on - strand, within AO353_25805 at 5687.891 kb on - strand, within AO353_25805 at 5687.891 kb on - strand, within AO353_25805 at 5687.894 kb on + strand, within AO353_25805 at 5687.894 kb on + strand, within AO353_25805 at 5687.894 kb on + strand, within AO353_25805 at 5687.894 kb on + strand, within AO353_25805 at 5687.894 kb on + strand, within AO353_25805 at 5687.894 kb on + strand, within AO353_25805 at 5687.894 kb on + strand, within AO353_25805 at 5687.894 kb on + strand, within AO353_25805 at 5687.895 kb on - strand, within AO353_25805 at 5687.895 kb on - strand, within AO353_25805 at 5687.895 kb on - strand, within AO353_25805 at 5687.895 kb on - strand, within AO353_25805 at 5687.895 kb on - strand, within AO353_25805 at 5687.895 kb on - strand, within AO353_25805 at 5687.895 kb on - strand, within AO353_25805 at 5687.895 kb on - strand, within AO353_25805 at 5687.895 kb on - strand, within AO353_25805 at 5687.895 kb on - strand, within AO353_25805 at 5687.934 kb on + strand, within AO353_25805 at 5687.935 kb on - strand, within AO353_25805 at 5688.022 kb on + strand, within AO353_25805 at 5688.022 kb on + strand, within AO353_25805 at 5688.023 kb on - strand, within AO353_25805 at 5688.023 kb on - strand, within AO353_25805 at 5688.023 kb on - strand, within AO353_25805 at 5688.023 kb on - strand, within AO353_25805 at 5688.023 kb on - strand, within AO353_25805 at 5688.110 kb on + strand, within AO353_25805 at 5688.110 kb on + strand, within AO353_25805 at 5688.110 kb on + strand, within AO353_25805 at 5688.111 kb on - strand, within AO353_25805 at 5688.239 kb on + strand at 5688.239 kb on + strand at 5688.239 kb on + strand at 5688.239 kb on + strand at 5688.239 kb on + strand at 5688.240 kb on - strand at 5688.240 kb on - strand at 5688.240 kb on - strand at 5688.240 kb on - strand at 5688.240 kb on - strand at 5688.240 kb on - strand at 5688.246 kb on - strand at 5688.412 kb on + strand at 5688.412 kb on + strand at 5688.412 kb on + strand at 5688.412 kb on + strand at 5688.412 kb on + strand at 5688.413 kb on - strand at 5688.413 kb on - strand at 5688.413 kb on - strand at 5688.449 kb on + strand, within AO353_25810 at 5688.450 kb on - strand, within AO353_25810 at 5688.450 kb on - strand, within AO353_25810 at 5688.659 kb on + strand, within AO353_25810 at 5688.660 kb on - strand, within AO353_25810 at 5688.660 kb on - strand, within AO353_25810 at 5688.752 kb on + strand, within AO353_25810 at 5688.753 kb on - strand, within AO353_25810 at 5688.753 kb on - strand, within AO353_25810 at 5688.753 kb on - strand, within AO353_25810 at 5688.837 kb on + strand, within AO353_25810 at 5688.837 kb on + strand, within AO353_25810 at 5688.837 kb on + strand, within AO353_25810 at 5688.923 kb on - strand, within AO353_25810 at 5688.923 kb on - strand, within AO353_25810 at 5688.923 kb on - strand, within AO353_25810 at 5688.975 kb on + strand, within AO353_25810 at 5688.975 kb on + strand, within AO353_25810 at 5688.975 kb on + strand, within AO353_25810 at 5688.975 kb on + strand, within AO353_25810 at 5688.976 kb on - strand, within AO353_25810 at 5688.976 kb on - strand, within AO353_25810 at 5688.976 kb on - strand, within AO353_25810 at 5689.077 kb on + strand, within AO353_25810 at 5689.078 kb on - strand, within AO353_25810 at 5689.078 kb on - strand, within AO353_25810 at 5689.336 kb on - strand, within AO353_25810 at 5689.336 kb on - strand, within AO353_25810 at 5689.336 kb on - strand, within AO353_25810 at 5689.480 kb on - strand, within AO353_25810 at 5689.480 kb on - strand, within AO353_25810 at 5689.530 kb on + strand at 5689.531 kb on - strand at 5689.531 kb on - strand at 5689.558 kb on - strand at 5689.573 kb on + strand at 5689.607 kb on - strand at 5689.703 kb on + strand at 5689.704 kb on - strand at 5689.733 kb on + strand at 5689.734 kb on - strand at 5689.741 kb on - strand at 5689.743 kb on + strand at 5689.743 kb on + strand at 5689.743 kb on + strand at 5689.744 kb on - strand at 5689.744 kb on - strand at 5689.747 kb on - strand at 5689.747 kb on - strand at 5689.747 kb on - strand at 5689.763 kb on - strand at 5689.769 kb on + strand at 5689.782 kb on + strand at 5689.846 kb on + strand at 5689.847 kb on - strand at 5689.848 kb on + strand at 5689.849 kb on - strand at 5689.909 kb on + strand at 5689.910 kb on - strand at 5689.910 kb on - strand at 5689.910 kb on - strand at 5689.915 kb on + strand at 5689.915 kb on + strand at 5689.916 kb on - strand at 5689.916 kb on - strand at 5690.037 kb on - strand, within AO353_25815 at 5690.151 kb on + strand, within AO353_25815 at 5690.151 kb on + strand, within AO353_25815 at 5690.151 kb on + strand, within AO353_25815 at 5690.151 kb on + strand, within AO353_25815 at 5690.151 kb on + strand, within AO353_25815 at 5690.151 kb on + strand, within AO353_25815 at 5690.151 kb on + strand, within AO353_25815 at 5690.152 kb on - strand, within AO353_25815 at 5690.152 kb on - strand, within AO353_25815 at 5690.152 kb on - strand, within AO353_25815 at 5690.152 kb on - strand, within AO353_25815 at 5690.296 kb on + strand at 5690.361 kb on + strand at 5690.361 kb on + strand at 5690.361 kb on + strand at 5690.361 kb on + strand at 5690.362 kb on - strand at 5690.363 kb on + strand at 5690.363 kb on + strand at 5690.363 kb on + strand at 5690.364 kb on - strand at 5690.470 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 5,687,315 + AO353_25805 0.27 -0.5 5,687,315 + AO353_25805 0.27 +0.0 5,687,316 - AO353_25805 0.27 +3.0 5,687,375 + AO353_25805 0.32 -0.9 5,687,375 + AO353_25805 0.32 +0.3 5,687,375 + AO353_25805 0.32 -0.4 5,687,375 + AO353_25805 0.32 +1.3 5,687,375 + AO353_25805 0.32 -0.1 5,687,375 + +0.2 5,687,375 + AO353_25805 0.32 +0.4 5,687,375 + AO353_25805 0.32 +1.2 5,687,375 + AO353_25805 0.32 +0.4 5,687,376 - +2.2 5,687,376 - +3.8 5,687,376 - AO353_25805 0.32 -1.1 5,687,376 - AO353_25805 0.32 -1.0 5,687,376 - AO353_25805 0.32 -0.1 5,687,376 - AO353_25805 0.32 -1.5 5,687,376 - AO353_25805 0.32 -2.4 5,687,376 - AO353_25805 0.32 +1.2 5,687,376 - AO353_25805 0.32 -1.0 5,687,376 - AO353_25805 0.32 -0.6 5,687,376 - AO353_25805 0.32 +0.2 5,687,376 - AO353_25805 0.32 -0.2 5,687,384 + AO353_25805 0.32 +1.2 5,687,502 - AO353_25805 0.41 -0.8 5,687,564 + AO353_25805 0.46 -2.0 5,687,564 + AO353_25805 0.46 +1.1 5,687,564 + AO353_25805 0.46 +0.6 5,687,565 - AO353_25805 0.46 +0.6 5,687,565 - AO353_25805 0.46 -1.5 5,687,565 - AO353_25805 0.46 -1.0 5,687,565 - AO353_25805 0.46 -1.9 5,687,565 - AO353_25805 0.46 -1.1 5,687,565 - AO353_25805 0.46 +0.8 5,687,565 - AO353_25805 0.46 -1.7 5,687,565 - AO353_25805 0.46 +0.9 5,687,565 - AO353_25805 0.46 +0.0 5,687,635 - AO353_25805 0.52 -1.8 5,687,653 + AO353_25805 0.53 -0.1 5,687,654 - AO353_25805 0.53 -1.8 5,687,660 + AO353_25805 0.54 +0.6 5,687,660 + AO353_25805 0.54 -0.0 5,687,660 + AO353_25805 0.54 -0.1 5,687,661 - AO353_25805 0.54 -0.4 5,687,661 - AO353_25805 0.54 -0.2 5,687,661 - AO353_25805 0.54 +0.2 5,687,661 - AO353_25805 0.54 +1.6 5,687,661 - AO353_25805 0.54 +0.1 5,687,661 - AO353_25805 0.54 -0.6 5,687,661 - AO353_25805 0.54 -2.5 5,687,788 - AO353_25805 0.64 -0.8 5,687,888 + AO353_25805 0.72 +1.8 5,687,888 + AO353_25805 0.72 +0.8 5,687,888 + AO353_25805 0.72 -0.2 5,687,888 + AO353_25805 0.72 +1.0 5,687,888 + AO353_25805 0.72 +0.4 5,687,888 + AO353_25805 0.72 +0.6 5,687,888 + AO353_25805 0.72 +1.2 5,687,889 - AO353_25805 0.72 -1.1 5,687,889 - AO353_25805 0.72 +0.6 5,687,889 - AO353_25805 0.72 +0.9 5,687,890 + AO353_25805 0.72 +0.9 5,687,890 + AO353_25805 0.72 +1.7 5,687,890 + AO353_25805 0.72 +0.6 5,687,891 - AO353_25805 0.72 +0.6 5,687,891 - AO353_25805 0.72 +1.2 5,687,891 - AO353_25805 0.72 -1.0 5,687,891 - AO353_25805 0.72 +1.4 5,687,894 + AO353_25805 0.72 -0.5 5,687,894 + AO353_25805 0.72 +0.2 5,687,894 + AO353_25805 0.72 -1.8 5,687,894 + AO353_25805 0.72 +0.8 5,687,894 + AO353_25805 0.72 -2.3 5,687,894 + AO353_25805 0.72 -0.5 5,687,894 + AO353_25805 0.72 -1.5 5,687,894 + AO353_25805 0.72 +0.7 5,687,895 - AO353_25805 0.72 -1.4 5,687,895 - AO353_25805 0.72 -0.8 5,687,895 - AO353_25805 0.72 -0.4 5,687,895 - AO353_25805 0.72 -0.1 5,687,895 - AO353_25805 0.72 +0.4 5,687,895 - AO353_25805 0.72 -0.6 5,687,895 - AO353_25805 0.72 +0.8 5,687,895 - AO353_25805 0.72 -0.5 5,687,895 - AO353_25805 0.72 +0.1 5,687,895 - AO353_25805 0.72 -1.1 5,687,934 + AO353_25805 0.75 +0.2 5,687,935 - AO353_25805 0.75 -2.1 5,688,022 + AO353_25805 0.82 +0.9 5,688,022 + AO353_25805 0.82 -0.1 5,688,023 - AO353_25805 0.82 -1.6 5,688,023 - AO353_25805 0.82 -1.3 5,688,023 - AO353_25805 0.82 -2.1 5,688,023 - AO353_25805 0.82 -0.5 5,688,023 - AO353_25805 0.82 +1.2 5,688,110 + AO353_25805 0.89 -1.3 5,688,110 + AO353_25805 0.89 +0.6 5,688,110 + AO353_25805 0.89 -1.1 5,688,111 - AO353_25805 0.89 -2.7 5,688,239 + -0.1 5,688,239 + +0.6 5,688,239 + -2.5 5,688,239 + +0.4 5,688,239 + -0.2 5,688,240 - -0.4 5,688,240 - +1.5 5,688,240 - -1.0 5,688,240 - -1.4 5,688,240 - -1.9 5,688,240 - -0.4 5,688,246 - -0.4 5,688,412 + +0.3 5,688,412 + -0.8 5,688,412 + -1.0 5,688,412 + -0.6 5,688,412 + -1.9 5,688,413 - -1.6 5,688,413 - -1.7 5,688,413 - -1.1 5,688,449 + AO353_25810 0.10 +0.8 5,688,450 - AO353_25810 0.10 +0.6 5,688,450 - AO353_25810 0.10 -1.7 5,688,659 + AO353_25810 0.26 -0.4 5,688,660 - AO353_25810 0.26 -0.9 5,688,660 - AO353_25810 0.26 +0.6 5,688,752 + AO353_25810 0.33 +0.3 5,688,753 - AO353_25810 0.33 -0.3 5,688,753 - AO353_25810 0.33 -0.1 5,688,753 - AO353_25810 0.33 -1.0 5,688,837 + AO353_25810 0.40 -0.1 5,688,837 + AO353_25810 0.40 +1.7 5,688,837 + AO353_25810 0.40 -1.5 5,688,923 - AO353_25810 0.46 -0.4 5,688,923 - AO353_25810 0.46 -0.1 5,688,923 - AO353_25810 0.46 -0.8 5,688,975 + AO353_25810 0.50 +0.2 5,688,975 + AO353_25810 0.50 -1.8 5,688,975 + AO353_25810 0.50 +0.2 5,688,975 + AO353_25810 0.50 -3.2 5,688,976 - AO353_25810 0.50 -0.5 5,688,976 - AO353_25810 0.50 +1.0 5,688,976 - AO353_25810 0.50 -1.7 5,689,077 + AO353_25810 0.58 -0.3 5,689,078 - AO353_25810 0.58 -0.6 5,689,078 - AO353_25810 0.58 -1.4 5,689,336 - AO353_25810 0.77 -1.3 5,689,336 - AO353_25810 0.77 -1.5 5,689,336 - AO353_25810 0.77 -2.2 5,689,480 - AO353_25810 0.88 -0.3 5,689,480 - AO353_25810 0.88 +0.6 5,689,530 + +0.6 5,689,531 - +0.3 5,689,531 - -0.4 5,689,558 - -0.9 5,689,573 + +1.7 5,689,607 - -0.8 5,689,703 + +0.2 5,689,704 - -0.2 5,689,733 + -0.2 5,689,734 - -0.7 5,689,741 - -1.0 5,689,743 + +0.3 5,689,743 + -1.6 5,689,743 + +1.0 5,689,744 - -1.8 5,689,744 - -0.6 5,689,747 - -0.8 5,689,747 - +0.3 5,689,747 - -0.6 5,689,763 - +2.4 5,689,769 + -0.1 5,689,782 + +1.3 5,689,846 + +1.6 5,689,847 - -1.5 5,689,848 + -0.0 5,689,849 - -2.4 5,689,909 + +1.3 5,689,910 - -1.3 5,689,910 - -1.8 5,689,910 - -2.0 5,689,915 + +4.6 5,689,915 + -0.8 5,689,916 - +0.2 5,689,916 - -0.9 5,690,037 - AO353_25815 0.20 -1.0 5,690,151 + AO353_25815 0.63 -0.7 5,690,151 + AO353_25815 0.63 -1.3 5,690,151 + AO353_25815 0.63 -1.0 5,690,151 + AO353_25815 0.63 -1.5 5,690,151 + AO353_25815 0.63 -1.0 5,690,151 + AO353_25815 0.63 +0.0 5,690,151 + AO353_25815 0.63 -0.6 5,690,152 - AO353_25815 0.63 -2.2 5,690,152 - AO353_25815 0.63 +0.2 5,690,152 - AO353_25815 0.63 -1.3 5,690,152 - AO353_25815 0.63 -0.8 5,690,296 + -0.1 5,690,361 + +1.6 5,690,361 + -0.4 5,690,361 + -1.1 5,690,361 + -0.8 5,690,362 - +0.7 5,690,363 + -0.3 5,690,363 + -2.1 5,690,363 + +1.2 5,690,364 - -2.3 5,690,470 + -0.4
Or see this region's nucleotide sequence