Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_25420 and AO353_25425 are separated by 15 nucleotides AO353_25425 and AO353_25430 overlap by 1 nucleotides AO353_25430 and AO353_25435 are separated by 27 nucleotides
AO353_25420: AO353_25420 - spermidine/putrescine ABC transporter ATP-binding protein, at 5,604,681 to 5,605,799
_25420
AO353_25425: AO353_25425 - ABC transporter permease, at 5,605,815 to 5,606,735
_25425
AO353_25430: AO353_25430 - ABC transporter permease, at 5,606,735 to 5,607,541
_25430
AO353_25435: AO353_25435 - spermidine/putrescine ABC transporter substrate-binding protein, at 5,607,569 to 5,608,615
_25435
Position (kb) 5606
5607
5608 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5605.853 kb on + strand at 5605.853 kb on + strand at 5605.853 kb on + strand at 5606.001 kb on + strand, within AO353_25425 at 5606.002 kb on - strand, within AO353_25425 at 5606.002 kb on - strand, within AO353_25425 at 5606.058 kb on + strand, within AO353_25425 at 5606.059 kb on - strand, within AO353_25425 at 5606.112 kb on - strand, within AO353_25425 at 5606.112 kb on - strand, within AO353_25425 at 5606.112 kb on - strand, within AO353_25425 at 5606.229 kb on + strand, within AO353_25425 at 5606.229 kb on + strand, within AO353_25425 at 5606.319 kb on + strand, within AO353_25425 at 5606.319 kb on + strand, within AO353_25425 at 5606.320 kb on - strand, within AO353_25425 at 5606.320 kb on - strand, within AO353_25425 at 5606.320 kb on - strand at 5606.320 kb on - strand, within AO353_25425 at 5606.320 kb on - strand, within AO353_25425 at 5606.320 kb on - strand, within AO353_25425 at 5606.320 kb on - strand, within AO353_25425 at 5606.320 kb on - strand, within AO353_25425 at 5606.352 kb on + strand, within AO353_25425 at 5606.353 kb on - strand, within AO353_25425 at 5606.353 kb on - strand, within AO353_25425 at 5606.353 kb on - strand, within AO353_25425 at 5606.385 kb on + strand, within AO353_25425 at 5606.439 kb on + strand, within AO353_25425 at 5606.439 kb on + strand, within AO353_25425 at 5606.688 kb on + strand at 5606.689 kb on - strand at 5606.689 kb on - strand at 5606.689 kb on - strand at 5606.689 kb on - strand at 5606.733 kb on + strand at 5606.733 kb on + strand at 5606.734 kb on - strand at 5606.734 kb on - strand at 5606.734 kb on - strand at 5606.745 kb on + strand at 5606.746 kb on - strand at 5606.746 kb on - strand at 5606.810 kb on + strand at 5606.811 kb on - strand at 5606.811 kb on - strand at 5606.816 kb on + strand, within AO353_25430 at 5606.816 kb on + strand, within AO353_25430 at 5606.817 kb on - strand, within AO353_25430 at 5606.817 kb on - strand at 5606.822 kb on + strand, within AO353_25430 at 5606.822 kb on + strand, within AO353_25430 at 5606.822 kb on + strand, within AO353_25430 at 5606.823 kb on - strand, within AO353_25430 at 5606.823 kb on - strand, within AO353_25430 at 5607.084 kb on + strand, within AO353_25430 at 5607.175 kb on + strand, within AO353_25430 at 5607.176 kb on - strand, within AO353_25430 at 5607.176 kb on - strand, within AO353_25430 at 5607.176 kb on - strand, within AO353_25430 at 5607.176 kb on - strand, within AO353_25430 at 5607.176 kb on - strand, within AO353_25430 at 5607.176 kb on - strand, within AO353_25430 at 5607.337 kb on - strand, within AO353_25430 at 5607.515 kb on + strand at 5607.515 kb on + strand at 5607.516 kb on - strand at 5607.516 kb on - strand at 5607.516 kb on - strand at 5607.564 kb on + strand at 5607.565 kb on - strand at 5607.565 kb on - strand at 5607.565 kb on - strand at 5607.565 kb on - strand at 5607.565 kb on - strand at 5607.568 kb on + strand at 5607.568 kb on + strand at 5607.568 kb on + strand at 5607.568 kb on + strand at 5607.569 kb on - strand at 5607.569 kb on - strand at 5607.569 kb on - strand at 5607.569 kb on - strand at 5607.569 kb on - strand at 5607.569 kb on - strand at 5607.569 kb on - strand at 5607.569 kb on - strand at 5607.680 kb on + strand, within AO353_25435 at 5607.680 kb on + strand, within AO353_25435 at 5607.681 kb on - strand, within AO353_25435 at 5607.746 kb on + strand, within AO353_25435 at 5607.746 kb on + strand, within AO353_25435 at 5607.747 kb on - strand, within AO353_25435 at 5607.885 kb on - strand, within AO353_25435 at 5607.887 kb on + strand, within AO353_25435 at 5607.888 kb on - strand, within AO353_25435 at 5607.920 kb on - strand, within AO353_25435 at 5607.920 kb on - strand, within AO353_25435 at 5607.995 kb on + strand, within AO353_25435 at 5607.996 kb on - strand, within AO353_25435 at 5607.997 kb on + strand, within AO353_25435 at 5607.997 kb on + strand, within AO353_25435 at 5607.997 kb on + strand, within AO353_25435 at 5607.997 kb on + strand, within AO353_25435 at 5607.997 kb on + strand, within AO353_25435 at 5607.997 kb on + strand, within AO353_25435 at 5607.998 kb on - strand, within AO353_25435 at 5607.998 kb on - strand, within AO353_25435 at 5608.016 kb on + strand, within AO353_25435 at 5608.016 kb on + strand, within AO353_25435 at 5608.016 kb on + strand, within AO353_25435 at 5608.016 kb on + strand, within AO353_25435 at 5608.016 kb on + strand, within AO353_25435 at 5608.016 kb on + strand, within AO353_25435 at 5608.016 kb on + strand, within AO353_25435 at 5608.016 kb on + strand, within AO353_25435 at 5608.016 kb on + strand, within AO353_25435 at 5608.016 kb on + strand, within AO353_25435 at 5608.017 kb on - strand, within AO353_25435 at 5608.017 kb on - strand, within AO353_25435 at 5608.017 kb on - strand, within AO353_25435 at 5608.017 kb on - strand, within AO353_25435 at 5608.028 kb on + strand, within AO353_25435 at 5608.028 kb on + strand, within AO353_25435 at 5608.063 kb on + strand, within AO353_25435 at 5608.063 kb on + strand, within AO353_25435 at 5608.063 kb on + strand, within AO353_25435 at 5608.063 kb on + strand, within AO353_25435 at 5608.064 kb on - strand, within AO353_25435 at 5608.064 kb on - strand, within AO353_25435 at 5608.064 kb on - strand, within AO353_25435 at 5608.064 kb on - strand, within AO353_25435 at 5608.064 kb on - strand, within AO353_25435 at 5608.064 kb on - strand, within AO353_25435 at 5608.064 kb on - strand, within AO353_25435 at 5608.106 kb on + strand, within AO353_25435 at 5608.106 kb on + strand, within AO353_25435 at 5608.106 kb on + strand, within AO353_25435 at 5608.160 kb on - strand, within AO353_25435 at 5608.197 kb on - strand, within AO353_25435 at 5608.310 kb on + strand, within AO353_25435 at 5608.310 kb on + strand at 5608.310 kb on + strand, within AO353_25435 at 5608.310 kb on + strand, within AO353_25435 at 5608.310 kb on + strand, within AO353_25435 at 5608.311 kb on - strand, within AO353_25435 at 5608.311 kb on - strand, within AO353_25435 at 5608.311 kb on - strand, within AO353_25435 at 5608.311 kb on - strand, within AO353_25435 at 5608.311 kb on - strand, within AO353_25435 at 5608.311 kb on - strand, within AO353_25435 at 5608.311 kb on - strand, within AO353_25435
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 5,605,853 + -1.9 5,605,853 + +0.1 5,605,853 + -0.2 5,606,001 + AO353_25425 0.20 +1.5 5,606,002 - AO353_25425 0.20 +1.3 5,606,002 - AO353_25425 0.20 -0.5 5,606,058 + AO353_25425 0.26 +1.5 5,606,059 - AO353_25425 0.26 +0.3 5,606,112 - AO353_25425 0.32 -2.1 5,606,112 - AO353_25425 0.32 -1.1 5,606,112 - AO353_25425 0.32 -0.9 5,606,229 + AO353_25425 0.45 -0.9 5,606,229 + AO353_25425 0.45 -0.7 5,606,319 + AO353_25425 0.55 -0.5 5,606,319 + AO353_25425 0.55 +0.5 5,606,320 - AO353_25425 0.55 -0.2 5,606,320 - AO353_25425 0.55 +0.5 5,606,320 - +2.1 5,606,320 - AO353_25425 0.55 -0.7 5,606,320 - AO353_25425 0.55 -1.4 5,606,320 - AO353_25425 0.55 -1.2 5,606,320 - AO353_25425 0.55 -0.2 5,606,320 - AO353_25425 0.55 -0.4 5,606,352 + AO353_25425 0.58 -0.2 5,606,353 - AO353_25425 0.58 -0.3 5,606,353 - AO353_25425 0.58 -0.7 5,606,353 - AO353_25425 0.58 +0.4 5,606,385 + AO353_25425 0.62 -0.5 5,606,439 + AO353_25425 0.68 -1.0 5,606,439 + AO353_25425 0.68 -1.1 5,606,688 + +0.8 5,606,689 - +0.4 5,606,689 - +0.3 5,606,689 - -0.7 5,606,689 - +0.5 5,606,733 + +0.8 5,606,733 + -1.4 5,606,734 - +0.1 5,606,734 - -0.2 5,606,734 - +1.9 5,606,745 + -2.3 5,606,746 - -0.1 5,606,746 - -0.8 5,606,810 + +2.1 5,606,811 - +0.5 5,606,811 - +0.1 5,606,816 + AO353_25430 0.10 -0.2 5,606,816 + AO353_25430 0.10 -0.9 5,606,817 - AO353_25430 0.10 +1.4 5,606,817 - +0.5 5,606,822 + AO353_25430 0.11 -0.5 5,606,822 + AO353_25430 0.11 +0.9 5,606,822 + AO353_25430 0.11 +0.5 5,606,823 - AO353_25430 0.11 +0.5 5,606,823 - AO353_25430 0.11 -0.0 5,607,084 + AO353_25430 0.43 +2.1 5,607,175 + AO353_25430 0.55 -0.7 5,607,176 - AO353_25430 0.55 +0.9 5,607,176 - AO353_25430 0.55 -0.7 5,607,176 - AO353_25430 0.55 -2.0 5,607,176 - AO353_25430 0.55 -1.7 5,607,176 - AO353_25430 0.55 -1.2 5,607,176 - AO353_25430 0.55 -0.9 5,607,337 - AO353_25430 0.75 -0.2 5,607,515 + -1.6 5,607,515 + +0.5 5,607,516 - -0.1 5,607,516 - -1.4 5,607,516 - +0.8 5,607,564 + +1.1 5,607,565 - -1.4 5,607,565 - -2.6 5,607,565 - +0.9 5,607,565 - +0.5 5,607,565 - -1.5 5,607,568 + +1.4 5,607,568 + -0.9 5,607,568 + -0.7 5,607,568 + -0.7 5,607,569 - -0.7 5,607,569 - -0.0 5,607,569 - +1.1 5,607,569 - -0.1 5,607,569 - -0.2 5,607,569 - -1.2 5,607,569 - +1.5 5,607,569 - +0.5 5,607,680 + AO353_25435 0.11 -0.5 5,607,680 + AO353_25435 0.11 -0.9 5,607,681 - AO353_25435 0.11 -1.5 5,607,746 + AO353_25435 0.17 -0.9 5,607,746 + AO353_25435 0.17 -1.4 5,607,747 - AO353_25435 0.17 -0.4 5,607,885 - AO353_25435 0.30 -0.5 5,607,887 + AO353_25435 0.30 +0.1 5,607,888 - AO353_25435 0.30 +0.9 5,607,920 - AO353_25435 0.34 -2.4 5,607,920 - AO353_25435 0.34 +0.1 5,607,995 + AO353_25435 0.41 +0.0 5,607,996 - AO353_25435 0.41 -0.9 5,607,997 + AO353_25435 0.41 -0.2 5,607,997 + AO353_25435 0.41 -1.1 5,607,997 + AO353_25435 0.41 -0.9 5,607,997 + AO353_25435 0.41 -2.0 5,607,997 + AO353_25435 0.41 +0.5 5,607,997 + AO353_25435 0.41 +0.8 5,607,998 - AO353_25435 0.41 -1.3 5,607,998 - AO353_25435 0.41 +0.7 5,608,016 + AO353_25435 0.43 +0.1 5,608,016 + AO353_25435 0.43 +0.9 5,608,016 + AO353_25435 0.43 +0.1 5,608,016 + AO353_25435 0.43 -0.8 5,608,016 + AO353_25435 0.43 -0.3 5,608,016 + AO353_25435 0.43 +0.3 5,608,016 + AO353_25435 0.43 -0.6 5,608,016 + AO353_25435 0.43 +0.4 5,608,016 + AO353_25435 0.43 +0.1 5,608,016 + AO353_25435 0.43 -0.1 5,608,017 - AO353_25435 0.43 +0.5 5,608,017 - AO353_25435 0.43 -0.7 5,608,017 - AO353_25435 0.43 -2.4 5,608,017 - AO353_25435 0.43 -0.5 5,608,028 + AO353_25435 0.44 +0.1 5,608,028 + AO353_25435 0.44 -1.1 5,608,063 + AO353_25435 0.47 +0.8 5,608,063 + AO353_25435 0.47 -0.2 5,608,063 + AO353_25435 0.47 +0.4 5,608,063 + AO353_25435 0.47 -0.5 5,608,064 - AO353_25435 0.47 -1.1 5,608,064 - AO353_25435 0.47 -0.6 5,608,064 - AO353_25435 0.47 -1.7 5,608,064 - AO353_25435 0.47 +1.8 5,608,064 - AO353_25435 0.47 +1.6 5,608,064 - AO353_25435 0.47 -1.6 5,608,064 - AO353_25435 0.47 +0.5 5,608,106 + AO353_25435 0.51 +0.6 5,608,106 + AO353_25435 0.51 +0.8 5,608,106 + AO353_25435 0.51 -2.4 5,608,160 - AO353_25435 0.56 +0.2 5,608,197 - AO353_25435 0.60 +0.5 5,608,310 + AO353_25435 0.71 +2.5 5,608,310 + +2.1 5,608,310 + AO353_25435 0.71 -0.2 5,608,310 + AO353_25435 0.71 -2.8 5,608,310 + AO353_25435 0.71 -0.7 5,608,311 - AO353_25435 0.71 +0.6 5,608,311 - AO353_25435 0.71 +0.5 5,608,311 - AO353_25435 0.71 +0.9 5,608,311 - AO353_25435 0.71 -0.9 5,608,311 - AO353_25435 0.71 -0.5 5,608,311 - AO353_25435 0.71 -0.7 5,608,311 - AO353_25435 0.71 +0.6
Or see this region's nucleotide sequence