Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_24870 and AO353_24875 are separated by 25 nucleotides AO353_24875 and AO353_24880 are separated by 5 nucleotides AO353_24880 and AO353_24885 are separated by 123 nucleotides
AO353_24870: AO353_24870 - hypothetical protein, at 5,486,044 to 5,486,505
_24870
AO353_24875: AO353_24875 - histidine kinase, at 5,486,531 to 5,487,358
_24875
AO353_24880: AO353_24880 - Crp/Fnr family transcriptional regulator, at 5,487,364 to 5,488,059
_24880
AO353_24885: AO353_24885 - Crp/Fnr family transcriptional regulator, at 5,488,183 to 5,488,911
_24885
Position (kb) 5487
5488
5489 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5486.407 kb on + strand, within AO353_24870 at 5486.407 kb on + strand, within AO353_24870 at 5486.408 kb on - strand, within AO353_24870 at 5486.466 kb on + strand at 5486.466 kb on + strand at 5486.466 kb on + strand at 5486.467 kb on - strand at 5486.504 kb on - strand at 5486.519 kb on - strand at 5486.630 kb on + strand, within AO353_24875 at 5486.630 kb on + strand, within AO353_24875 at 5486.630 kb on + strand, within AO353_24875 at 5486.630 kb on + strand, within AO353_24875 at 5486.631 kb on - strand, within AO353_24875 at 5486.631 kb on - strand, within AO353_24875 at 5486.631 kb on - strand, within AO353_24875 at 5486.811 kb on + strand, within AO353_24875 at 5486.811 kb on + strand, within AO353_24875 at 5486.811 kb on + strand, within AO353_24875 at 5486.812 kb on - strand, within AO353_24875 at 5486.823 kb on + strand, within AO353_24875 at 5486.823 kb on + strand, within AO353_24875 at 5486.823 kb on + strand, within AO353_24875 at 5486.824 kb on - strand, within AO353_24875 at 5486.824 kb on - strand, within AO353_24875 at 5486.824 kb on - strand, within AO353_24875 at 5487.049 kb on + strand, within AO353_24875 at 5487.049 kb on + strand, within AO353_24875 at 5487.050 kb on - strand, within AO353_24875 at 5487.050 kb on - strand, within AO353_24875 at 5487.235 kb on + strand, within AO353_24875 at 5487.236 kb on - strand, within AO353_24875 at 5487.313 kb on - strand at 5487.325 kb on + strand at 5487.325 kb on + strand at 5487.326 kb on - strand at 5487.326 kb on - strand at 5487.356 kb on + strand at 5487.367 kb on + strand at 5487.392 kb on + strand at 5487.392 kb on + strand at 5487.392 kb on + strand at 5487.392 kb on + strand at 5487.392 kb on + strand at 5487.393 kb on - strand at 5487.393 kb on - strand at 5487.393 kb on - strand at 5487.393 kb on - strand at 5487.393 kb on - strand at 5487.668 kb on + strand, within AO353_24880 at 5487.668 kb on + strand, within AO353_24880 at 5487.668 kb on + strand, within AO353_24880 at 5487.668 kb on + strand, within AO353_24880 at 5487.668 kb on + strand, within AO353_24880 at 5487.668 kb on + strand, within AO353_24880 at 5487.668 kb on + strand, within AO353_24880 at 5487.669 kb on - strand, within AO353_24880 at 5487.669 kb on - strand, within AO353_24880 at 5487.674 kb on + strand, within AO353_24880 at 5487.674 kb on + strand, within AO353_24880 at 5487.674 kb on + strand, within AO353_24880 at 5487.674 kb on + strand, within AO353_24880 at 5487.675 kb on - strand, within AO353_24880 at 5487.866 kb on + strand, within AO353_24880 at 5487.867 kb on - strand, within AO353_24880 at 5487.867 kb on - strand, within AO353_24880 at 5487.869 kb on - strand, within AO353_24880 at 5487.908 kb on + strand, within AO353_24880 at 5487.908 kb on + strand, within AO353_24880 at 5487.908 kb on + strand, within AO353_24880 at 5487.908 kb on + strand, within AO353_24880 at 5487.908 kb on + strand, within AO353_24880 at 5487.908 kb on + strand, within AO353_24880 at 5487.908 kb on + strand, within AO353_24880 at 5487.909 kb on - strand, within AO353_24880 at 5487.909 kb on - strand, within AO353_24880 at 5487.909 kb on - strand, within AO353_24880 at 5487.909 kb on - strand, within AO353_24880 at 5487.909 kb on - strand, within AO353_24880 at 5487.995 kb on + strand at 5487.995 kb on + strand at 5487.996 kb on - strand at 5488.033 kb on + strand at 5488.050 kb on + strand at 5488.051 kb on - strand at 5488.051 kb on - strand at 5488.051 kb on - strand at 5488.051 kb on - strand at 5488.051 kb on - strand at 5488.051 kb on - strand at 5488.051 kb on - strand at 5488.125 kb on + strand at 5488.125 kb on + strand at 5488.126 kb on - strand at 5488.126 kb on - strand at 5488.126 kb on - strand at 5488.161 kb on + strand at 5488.208 kb on + strand at 5488.208 kb on + strand at 5488.209 kb on - strand at 5488.247 kb on + strand at 5488.730 kb on + strand, within AO353_24885 at 5488.730 kb on + strand, within AO353_24885 at 5488.731 kb on - strand, within AO353_24885 at 5488.731 kb on - strand, within AO353_24885 at 5488.731 kb on - strand, within AO353_24885 at 5488.763 kb on + strand, within AO353_24885 at 5488.763 kb on + strand, within AO353_24885 at 5488.763 kb on + strand, within AO353_24885 at 5488.763 kb on + strand, within AO353_24885 at 5488.763 kb on + strand, within AO353_24885 at 5488.764 kb on - strand, within AO353_24885 at 5488.794 kb on - strand, within AO353_24885 at 5488.940 kb on + strand at 5488.941 kb on - strand at 5488.941 kb on - strand at 5488.946 kb on + strand at 5488.953 kb on + strand at 5488.953 kb on + strand at 5488.954 kb on - strand at 5488.954 kb on - strand at 5488.972 kb on + strand at 5488.972 kb on + strand at 5488.972 kb on + strand at 5488.973 kb on - strand at 5488.973 kb on - strand at 5488.973 kb on - strand at 5488.973 kb on - strand at 5488.973 kb on - strand at 5489.003 kb on + strand at 5489.004 kb on - strand at 5489.004 kb on - strand at 5489.004 kb on - strand at 5489.004 kb on - strand at 5489.035 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 5,486,407 + AO353_24870 0.79 -0.5 5,486,407 + AO353_24870 0.79 -1.1 5,486,408 - AO353_24870 0.79 +1.3 5,486,466 + -0.1 5,486,466 + +0.1 5,486,466 + -0.5 5,486,467 - +0.1 5,486,504 - -0.1 5,486,519 - -1.7 5,486,630 + AO353_24875 0.12 -0.7 5,486,630 + AO353_24875 0.12 -1.6 5,486,630 + AO353_24875 0.12 -0.3 5,486,630 + AO353_24875 0.12 +1.1 5,486,631 - AO353_24875 0.12 +0.0 5,486,631 - AO353_24875 0.12 +1.1 5,486,631 - AO353_24875 0.12 -0.7 5,486,811 + AO353_24875 0.34 -1.8 5,486,811 + AO353_24875 0.34 +0.8 5,486,811 + AO353_24875 0.34 -0.8 5,486,812 - AO353_24875 0.34 -1.8 5,486,823 + AO353_24875 0.35 +0.3 5,486,823 + AO353_24875 0.35 -1.1 5,486,823 + AO353_24875 0.35 +1.6 5,486,824 - AO353_24875 0.35 -2.2 5,486,824 - AO353_24875 0.35 +0.8 5,486,824 - AO353_24875 0.35 -0.7 5,487,049 + AO353_24875 0.63 +0.8 5,487,049 + AO353_24875 0.63 +1.7 5,487,050 - AO353_24875 0.63 -0.5 5,487,050 - AO353_24875 0.63 -2.5 5,487,235 + AO353_24875 0.85 +0.3 5,487,236 - AO353_24875 0.85 -1.4 5,487,313 - -0.9 5,487,325 + -0.1 5,487,325 + +1.1 5,487,326 - +2.4 5,487,326 - -1.5 5,487,356 + +2.5 5,487,367 + +1.3 5,487,392 + +0.2 5,487,392 + -1.7 5,487,392 + -0.4 5,487,392 + +1.6 5,487,392 + +0.3 5,487,393 - +0.1 5,487,393 - +1.8 5,487,393 - +1.3 5,487,393 - -1.8 5,487,393 - -0.1 5,487,668 + AO353_24880 0.44 +1.1 5,487,668 + AO353_24880 0.44 +0.3 5,487,668 + AO353_24880 0.44 +1.8 5,487,668 + AO353_24880 0.44 -1.2 5,487,668 + AO353_24880 0.44 +1.7 5,487,668 + AO353_24880 0.44 +0.5 5,487,668 + AO353_24880 0.44 -0.5 5,487,669 - AO353_24880 0.44 -1.2 5,487,669 - AO353_24880 0.44 -1.6 5,487,674 + AO353_24880 0.45 +0.3 5,487,674 + AO353_24880 0.45 +0.2 5,487,674 + AO353_24880 0.45 +0.3 5,487,674 + AO353_24880 0.45 +1.9 5,487,675 - AO353_24880 0.45 +1.2 5,487,866 + AO353_24880 0.72 -2.1 5,487,867 - AO353_24880 0.72 +0.1 5,487,867 - AO353_24880 0.72 -1.1 5,487,869 - AO353_24880 0.73 +0.4 5,487,908 + AO353_24880 0.78 +0.5 5,487,908 + AO353_24880 0.78 -0.5 5,487,908 + AO353_24880 0.78 +0.9 5,487,908 + AO353_24880 0.78 -0.3 5,487,908 + AO353_24880 0.78 -0.5 5,487,908 + AO353_24880 0.78 -0.5 5,487,908 + AO353_24880 0.78 +0.1 5,487,909 - AO353_24880 0.78 +2.6 5,487,909 - AO353_24880 0.78 +4.1 5,487,909 - AO353_24880 0.78 -1.1 5,487,909 - AO353_24880 0.78 +0.6 5,487,909 - AO353_24880 0.78 +0.1 5,487,995 + +0.8 5,487,995 + -0.0 5,487,996 - -0.5 5,488,033 + +2.4 5,488,050 + -0.5 5,488,051 - -1.2 5,488,051 - -0.5 5,488,051 - -1.1 5,488,051 - -0.6 5,488,051 - -1.1 5,488,051 - -0.5 5,488,051 - +1.1 5,488,125 + -1.6 5,488,125 + -0.2 5,488,126 - -1.8 5,488,126 - -1.6 5,488,126 - +0.5 5,488,161 + -1.8 5,488,208 + -1.6 5,488,208 + +1.8 5,488,209 - +1.1 5,488,247 + -2.0 5,488,730 + AO353_24885 0.75 +1.1 5,488,730 + AO353_24885 0.75 +0.3 5,488,731 - AO353_24885 0.75 -2.1 5,488,731 - AO353_24885 0.75 -1.0 5,488,731 - AO353_24885 0.75 -0.2 5,488,763 + AO353_24885 0.80 +2.3 5,488,763 + AO353_24885 0.80 +0.9 5,488,763 + AO353_24885 0.80 -0.4 5,488,763 + AO353_24885 0.80 -0.1 5,488,763 + AO353_24885 0.80 -1.4 5,488,764 - AO353_24885 0.80 +0.1 5,488,794 - AO353_24885 0.84 +0.2 5,488,940 + -0.2 5,488,941 - -1.1 5,488,941 - +0.8 5,488,946 + -0.7 5,488,953 + -0.8 5,488,953 + +0.3 5,488,954 - +1.7 5,488,954 - -1.5 5,488,972 + -0.7 5,488,972 + +3.1 5,488,972 + +0.3 5,488,973 - +0.4 5,488,973 - -0.2 5,488,973 - -0.5 5,488,973 - +1.1 5,488,973 - -1.2 5,489,003 + -0.7 5,489,004 - -1.5 5,489,004 - -0.6 5,489,004 - +1.8 5,489,004 - +0.3 5,489,035 - -0.2
Or see this region's nucleotide sequence