Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23925

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23915 and AO353_23920 are separated by 0 nucleotidesAO353_23920 and AO353_23925 overlap by 11 nucleotidesAO353_23925 and AO353_23930 are separated by 44 nucleotidesAO353_23930 and AO353_23935 are separated by 23 nucleotides AO353_23915: AO353_23915 - chemotaxis protein CheY, at 5,247,027 to 5,250,494 _23915 AO353_23920: AO353_23920 - chemotaxis protein CheR, at 5,250,495 to 5,251,316 _23920 AO353_23925: AO353_23925 - histidine kinase, at 5,251,306 to 5,252,520 _23925 AO353_23930: AO353_23930 - chemotaxis protein CheY, at 5,252,565 to 5,252,942 _23930 AO353_23935: AO353_23935 - hypothetical protein, at 5,252,966 to 5,254,021 _23935 Position (kb) 5251 5252 5253Strain fitness (log2 ratio) -2 -1 0 1 2at 5250.488 kb on + strandat 5250.488 kb on + strandat 5250.488 kb on + strandat 5250.489 kb on - strandat 5250.489 kb on - strandat 5250.489 kb on - strandat 5250.492 kb on + strandat 5250.493 kb on - strandat 5250.493 kb on - strandat 5250.493 kb on - strandat 5250.493 kb on - strandat 5250.493 kb on - strandat 5250.493 kb on - strandat 5250.506 kb on + strandat 5250.506 kb on + strandat 5250.507 kb on - strandat 5250.543 kb on + strandat 5250.552 kb on + strandat 5250.552 kb on + strandat 5250.553 kb on - strandat 5250.553 kb on - strandat 5250.553 kb on - strandat 5250.553 kb on - strandat 5250.553 kb on - strandat 5250.553 kb on - strandat 5250.559 kb on - strandat 5250.574 kb on - strandat 5250.784 kb on - strand, within AO353_23920at 5250.784 kb on - strand, within AO353_23920at 5250.784 kb on - strand, within AO353_23920at 5250.834 kb on + strand, within AO353_23920at 5250.835 kb on - strand, within AO353_23920at 5250.835 kb on - strand, within AO353_23920at 5250.963 kb on + strand, within AO353_23920at 5250.963 kb on + strand, within AO353_23920at 5250.971 kb on + strand, within AO353_23920at 5250.972 kb on - strand, within AO353_23920at 5250.972 kb on - strand, within AO353_23920at 5250.972 kb on - strand, within AO353_23920at 5250.972 kb on - strand, within AO353_23920at 5250.975 kb on + strand, within AO353_23920at 5250.975 kb on + strand, within AO353_23920at 5250.975 kb on + strand, within AO353_23920at 5250.976 kb on - strand, within AO353_23920at 5250.976 kb on - strand, within AO353_23920at 5251.012 kb on - strand, within AO353_23920at 5251.012 kb on - strand, within AO353_23920at 5251.012 kb on - strand, within AO353_23920at 5251.012 kb on - strandat 5251.012 kb on - strand, within AO353_23920at 5251.012 kb on - strand, within AO353_23920at 5251.012 kb on - strand, within AO353_23920at 5251.012 kb on - strand, within AO353_23920at 5251.014 kb on + strand, within AO353_23920at 5251.014 kb on + strand, within AO353_23920at 5251.015 kb on - strand, within AO353_23920at 5251.015 kb on - strand, within AO353_23920at 5251.015 kb on - strand, within AO353_23920at 5251.015 kb on - strand, within AO353_23920at 5251.015 kb on - strand, within AO353_23920at 5251.026 kb on + strand, within AO353_23920at 5251.254 kb on + strandat 5251.254 kb on + strandat 5251.255 kb on - strandat 5251.255 kb on - strandat 5251.297 kb on - strandat 5251.314 kb on + strandat 5251.314 kb on + strandat 5251.314 kb on + strandat 5251.315 kb on - strandat 5251.315 kb on - strandat 5251.318 kb on - strandat 5251.405 kb on + strandat 5251.405 kb on + strandat 5251.405 kb on + strandat 5251.405 kb on + strandat 5251.406 kb on - strandat 5251.406 kb on - strandat 5251.406 kb on - strandat 5251.406 kb on - strandat 5251.406 kb on - strandat 5251.588 kb on + strand, within AO353_23925at 5251.589 kb on - strand, within AO353_23925at 5251.603 kb on + strand, within AO353_23925at 5251.632 kb on + strand, within AO353_23925at 5251.633 kb on - strand, within AO353_23925at 5251.849 kb on - strand, within AO353_23925at 5251.849 kb on - strand, within AO353_23925at 5251.972 kb on - strand, within AO353_23925at 5252.252 kb on - strand, within AO353_23925at 5252.252 kb on - strand, within AO353_23925at 5252.326 kb on - strand, within AO353_23925at 5252.326 kb on - strand, within AO353_23925at 5252.382 kb on - strand, within AO353_23925at 5252.387 kb on + strand, within AO353_23925at 5252.392 kb on - strand, within AO353_23925at 5252.392 kb on - strand, within AO353_23925at 5252.392 kb on - strand, within AO353_23925at 5252.392 kb on - strand, within AO353_23925at 5252.448 kb on + strandat 5252.462 kb on + strandat 5252.463 kb on - strandat 5252.463 kb on - strandat 5252.542 kb on + strandat 5252.543 kb on - strandat 5252.626 kb on + strand, within AO353_23930at 5252.627 kb on - strand, within AO353_23930at 5252.637 kb on + strand, within AO353_23930at 5252.674 kb on + strand, within AO353_23930at 5252.674 kb on + strand, within AO353_23930at 5252.674 kb on + strand, within AO353_23930at 5252.674 kb on + strand, within AO353_23930at 5252.674 kb on + strandat 5252.675 kb on - strand, within AO353_23930at 5252.675 kb on - strand, within AO353_23930at 5252.675 kb on - strand, within AO353_23930at 5252.675 kb on - strand, within AO353_23930at 5252.723 kb on + strand, within AO353_23930at 5252.723 kb on + strand, within AO353_23930at 5252.768 kb on - strand, within AO353_23930at 5252.940 kb on + strandat 5252.941 kb on - strandat 5252.961 kb on - strandat 5253.063 kb on + strandat 5253.063 kb on + strandat 5253.063 kb on + strandat 5253.181 kb on - strand, within AO353_23935at 5253.212 kb on + strand, within AO353_23935at 5253.213 kb on - strand, within AO353_23935at 5253.213 kb on - strand, within AO353_23935at 5253.275 kb on + strand, within AO353_23935at 5253.276 kb on - strand, within AO353_23935at 5253.276 kb on - strand, within AO353_23935at 5253.276 kb on - strand, within AO353_23935at 5253.486 kb on + strand, within AO353_23935at 5253.514 kb on + strand, within AO353_23935at 5253.515 kb on - strand, within AO353_23935

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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5,250,488 + -1.6
5,250,488 + -0.5
5,250,488 + -1.4
5,250,489 - +1.5
5,250,489 - -0.2
5,250,489 - +0.0
5,250,492 + -0.7
5,250,493 - -0.5
5,250,493 - +1.1
5,250,493 - +0.3
5,250,493 - -1.6
5,250,493 - +1.3
5,250,493 - +0.1
5,250,506 + +1.1
5,250,506 + -0.9
5,250,507 - -0.5
5,250,543 + +1.0
5,250,552 + +0.3
5,250,552 + -1.0
5,250,553 - +0.8
5,250,553 - +1.5
5,250,553 - +2.1
5,250,553 - +0.7
5,250,553 - -0.9
5,250,553 - -1.2
5,250,559 - -0.9
5,250,574 - -0.7
5,250,784 - AO353_23920 0.35 +1.0
5,250,784 - AO353_23920 0.35 +0.5
5,250,784 - AO353_23920 0.35 +1.4
5,250,834 + AO353_23920 0.41 -1.3
5,250,835 - AO353_23920 0.41 -0.5
5,250,835 - AO353_23920 0.41 +0.9
5,250,963 + AO353_23920 0.57 -1.7
5,250,963 + AO353_23920 0.57 -1.6
5,250,971 + AO353_23920 0.58 -1.5
5,250,972 - AO353_23920 0.58 -0.6
5,250,972 - AO353_23920 0.58 -0.1
5,250,972 - AO353_23920 0.58 -0.6
5,250,972 - AO353_23920 0.58 +0.0
5,250,975 + AO353_23920 0.58 -1.0
5,250,975 + AO353_23920 0.58 -1.0
5,250,975 + AO353_23920 0.58 -0.9
5,250,976 - AO353_23920 0.59 -0.9
5,250,976 - AO353_23920 0.59 +0.3
5,251,012 - AO353_23920 0.63 -1.2
5,251,012 - AO353_23920 0.63 +2.1
5,251,012 - AO353_23920 0.63 -0.2
5,251,012 - +1.5
5,251,012 - AO353_23920 0.63 +0.1
5,251,012 - AO353_23920 0.63 -1.9
5,251,012 - AO353_23920 0.63 +0.5
5,251,012 - AO353_23920 0.63 -0.7
5,251,014 + AO353_23920 0.63 -2.2
5,251,014 + AO353_23920 0.63 -1.5
5,251,015 - AO353_23920 0.63 +1.5
5,251,015 - AO353_23920 0.63 +1.8
5,251,015 - AO353_23920 0.63 +0.6
5,251,015 - AO353_23920 0.63 -1.2
5,251,015 - AO353_23920 0.63 +1.5
5,251,026 + AO353_23920 0.65 -2.4
5,251,254 + -1.7
5,251,254 + -1.2
5,251,255 - -0.5
5,251,255 - +0.1
5,251,297 - -1.5
5,251,314 + -1.9
5,251,314 + -0.9
5,251,314 + -1.7
5,251,315 - -0.2
5,251,315 - +0.1
5,251,318 - -1.0
5,251,405 + -2.3
5,251,405 + -2.2
5,251,405 + -0.7
5,251,405 + -1.0
5,251,406 - +0.9
5,251,406 - +1.0
5,251,406 - -0.1
5,251,406 - +0.5
5,251,406 - +1.4
5,251,588 + AO353_23925 0.23 -0.5
5,251,589 - AO353_23925 0.23 -2.0
5,251,603 + AO353_23925 0.24 -1.5
5,251,632 + AO353_23925 0.27 -0.5
5,251,633 - AO353_23925 0.27 +0.2
5,251,849 - AO353_23925 0.45 -1.2
5,251,849 - AO353_23925 0.45 +0.3
5,251,972 - AO353_23925 0.55 +0.5
5,252,252 - AO353_23925 0.78 +0.5
5,252,252 - AO353_23925 0.78 +0.1
5,252,326 - AO353_23925 0.84 +0.1
5,252,326 - AO353_23925 0.84 +0.6
5,252,382 - AO353_23925 0.89 -0.6
5,252,387 + AO353_23925 0.89 -0.9
5,252,392 - AO353_23925 0.89 -0.3
5,252,392 - AO353_23925 0.89 -0.4
5,252,392 - AO353_23925 0.89 +1.1
5,252,392 - AO353_23925 0.89 +2.5
5,252,448 + -0.4
5,252,462 + -1.8
5,252,463 - -0.9
5,252,463 - +0.7
5,252,542 + -0.5
5,252,543 - -0.9
5,252,626 + AO353_23930 0.16 +0.6
5,252,627 - AO353_23930 0.16 +1.5
5,252,637 + AO353_23930 0.19 -0.9
5,252,674 + AO353_23930 0.29 -0.3
5,252,674 + AO353_23930 0.29 +1.7
5,252,674 + AO353_23930 0.29 +1.1
5,252,674 + AO353_23930 0.29 +1.0
5,252,674 + +1.1
5,252,675 - AO353_23930 0.29 +0.7
5,252,675 - AO353_23930 0.29 -0.4
5,252,675 - AO353_23930 0.29 +0.3
5,252,675 - AO353_23930 0.29 +1.0
5,252,723 + AO353_23930 0.42 -0.6
5,252,723 + AO353_23930 0.42 -1.6
5,252,768 - AO353_23930 0.54 +0.3
5,252,940 + +0.1
5,252,941 - +0.3
5,252,961 - +1.7
5,253,063 + +0.1
5,253,063 + +0.9
5,253,063 + -0.4
5,253,181 - AO353_23935 0.20 -0.4
5,253,212 + AO353_23935 0.23 -2.0
5,253,213 - AO353_23935 0.23 +0.7
5,253,213 - AO353_23935 0.23 +0.3
5,253,275 + AO353_23935 0.29 -2.0
5,253,276 - AO353_23935 0.29 +0.8
5,253,276 - AO353_23935 0.29 +0.8
5,253,276 - AO353_23935 0.29 -0.9
5,253,486 + AO353_23935 0.49 -1.7
5,253,514 + AO353_23935 0.52 -1.0
5,253,515 - AO353_23935 0.52 +1.7

Or see this region's nucleotide sequence