Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20495

Experiment: Sisomicin 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_20490 and AO353_20495 are separated by 134 nucleotidesAO353_20495 and AO353_20500 are separated by 8 nucleotidesAO353_20500 and AO353_20505 are separated by 1 nucleotides AO353_20490: AO353_20490 - uracil permease, at 4,499,019 to 4,500,539 _20490 AO353_20495: AO353_20495 - NUDIX hydrolase, at 4,500,674 to 4,501,186 _20495 AO353_20500: AO353_20500 - ADP-ribose pyrophosphatase, at 4,501,195 to 4,501,902 _20500 AO353_20505: AO353_20505 - cytidyltransferase, at 4,501,904 to 4,502,449 _20505 Position (kb) 4500 4501 4502Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4500.125 kb on + strand, within AO353_20490at 4500.125 kb on + strand, within AO353_20490at 4500.125 kb on + strand, within AO353_20490at 4500.125 kb on + strand, within AO353_20490at 4500.126 kb on - strand, within AO353_20490at 4500.127 kb on + strand, within AO353_20490at 4500.127 kb on + strand, within AO353_20490at 4500.127 kb on + strand, within AO353_20490at 4500.127 kb on + strand, within AO353_20490at 4500.127 kb on + strand, within AO353_20490at 4500.127 kb on + strand, within AO353_20490at 4500.127 kb on + strand, within AO353_20490at 4500.127 kb on + strand, within AO353_20490at 4500.127 kb on + strand, within AO353_20490at 4500.127 kb on + strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.131 kb on + strand, within AO353_20490at 4500.131 kb on + strand, within AO353_20490at 4500.131 kb on + strand, within AO353_20490at 4500.131 kb on + strand, within AO353_20490at 4500.131 kb on + strand, within AO353_20490at 4500.131 kb on + strand, within AO353_20490at 4500.131 kb on + strand, within AO353_20490at 4500.132 kb on - strand, within AO353_20490at 4500.132 kb on - strand, within AO353_20490at 4500.132 kb on - strand, within AO353_20490at 4500.132 kb on - strand, within AO353_20490at 4500.132 kb on - strand, within AO353_20490at 4500.132 kb on - strand, within AO353_20490at 4500.228 kb on + strand, within AO353_20490at 4500.228 kb on + strand, within AO353_20490at 4500.228 kb on + strand, within AO353_20490at 4500.228 kb on + strand, within AO353_20490at 4500.229 kb on - strand, within AO353_20490at 4500.229 kb on - strand, within AO353_20490at 4500.229 kb on - strand, within AO353_20490at 4500.229 kb on - strand, within AO353_20490at 4500.420 kb on + strandat 4500.420 kb on + strandat 4500.420 kb on + strandat 4500.420 kb on + strandat 4500.420 kb on + strandat 4500.420 kb on + strandat 4500.420 kb on + strandat 4500.421 kb on - strandat 4500.421 kb on - strandat 4500.829 kb on + strand, within AO353_20495at 4500.830 kb on - strand, within AO353_20495at 4500.830 kb on - strand, within AO353_20495at 4500.837 kb on + strand, within AO353_20495at 4500.837 kb on + strand, within AO353_20495at 4501.143 kb on + strandat 4501.144 kb on - strandat 4501.144 kb on - strandat 4501.196 kb on + strandat 4501.196 kb on + strandat 4501.197 kb on - strandat 4501.197 kb on - strandat 4501.197 kb on - strandat 4501.197 kb on - strandat 4501.924 kb on - strandat 4501.933 kb on - strandat 4501.933 kb on - strandat 4501.933 kb on - strandat 4501.933 kb on - strandat 4501.933 kb on - strandat 4501.933 kb on - strandat 4502.079 kb on + strand, within AO353_20505at 4502.134 kb on + strand, within AO353_20505at 4502.178 kb on + strand, within AO353_20505at 4502.178 kb on + strand, within AO353_20505at 4502.178 kb on + strand, within AO353_20505at 4502.179 kb on - strand, within AO353_20505at 4502.179 kb on - strand, within AO353_20505at 4502.179 kb on - strand, within AO353_20505at 4502.179 kb on - strand, within AO353_20505at 4502.184 kb on + strand, within AO353_20505at 4502.184 kb on + strand, within AO353_20505at 4502.185 kb on - strand, within AO353_20505at 4502.185 kb on - strand, within AO353_20505at 4502.185 kb on - strand, within AO353_20505at 4502.185 kb on - strand, within AO353_20505at 4502.185 kb on - strand, within AO353_20505

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
remove
4,500,125 + AO353_20490 0.73 +0.2
4,500,125 + AO353_20490 0.73 -1.6
4,500,125 + AO353_20490 0.73 -0.6
4,500,125 + AO353_20490 0.73 -0.7
4,500,126 - AO353_20490 0.73 +1.1
4,500,127 + AO353_20490 0.73 -0.2
4,500,127 + AO353_20490 0.73 +0.2
4,500,127 + AO353_20490 0.73 +0.4
4,500,127 + AO353_20490 0.73 -0.6
4,500,127 + AO353_20490 0.73 +1.4
4,500,127 + AO353_20490 0.73 -0.6
4,500,127 + AO353_20490 0.73 -0.7
4,500,127 + AO353_20490 0.73 +2.5
4,500,127 + AO353_20490 0.73 +0.3
4,500,127 + AO353_20490 0.73 +1.5
4,500,128 - AO353_20490 0.73 +0.4
4,500,128 - AO353_20490 0.73 -0.6
4,500,128 - AO353_20490 0.73 -1.5
4,500,128 - AO353_20490 0.73 -0.5
4,500,128 - AO353_20490 0.73 +0.9
4,500,128 - AO353_20490 0.73 +2.4
4,500,128 - AO353_20490 0.73 -0.5
4,500,128 - AO353_20490 0.73 +0.0
4,500,128 - AO353_20490 0.73 +0.5
4,500,128 - AO353_20490 0.73 +0.4
4,500,128 - AO353_20490 0.73 +1.0
4,500,128 - AO353_20490 0.73 -0.8
4,500,128 - AO353_20490 0.73 +0.3
4,500,128 - AO353_20490 0.73 -1.3
4,500,128 - AO353_20490 0.73 -0.5
4,500,128 - AO353_20490 0.73 -1.3
4,500,131 + AO353_20490 0.73 -0.8
4,500,131 + AO353_20490 0.73 +0.4
4,500,131 + AO353_20490 0.73 -0.2
4,500,131 + AO353_20490 0.73 -0.5
4,500,131 + AO353_20490 0.73 -0.2
4,500,131 + AO353_20490 0.73 +0.6
4,500,131 + AO353_20490 0.73 -2.5
4,500,132 - AO353_20490 0.73 -0.2
4,500,132 - AO353_20490 0.73 -1.3
4,500,132 - AO353_20490 0.73 +0.4
4,500,132 - AO353_20490 0.73 -0.7
4,500,132 - AO353_20490 0.73 -2.0
4,500,132 - AO353_20490 0.73 -1.5
4,500,228 + AO353_20490 0.79 -1.0
4,500,228 + AO353_20490 0.79 -1.1
4,500,228 + AO353_20490 0.79 +0.5
4,500,228 + AO353_20490 0.79 -0.3
4,500,229 - AO353_20490 0.80 +0.6
4,500,229 - AO353_20490 0.80 +0.1
4,500,229 - AO353_20490 0.80 +0.6
4,500,229 - AO353_20490 0.80 -1.8
4,500,420 + -1.5
4,500,420 + +0.4
4,500,420 + -0.5
4,500,420 + +0.5
4,500,420 + +0.4
4,500,420 + +0.6
4,500,420 + +0.8
4,500,421 - -0.6
4,500,421 - +1.9
4,500,829 + AO353_20495 0.30 -0.7
4,500,830 - AO353_20495 0.30 -1.6
4,500,830 - AO353_20495 0.30 -0.8
4,500,837 + AO353_20495 0.32 +1.6
4,500,837 + AO353_20495 0.32 -1.6
4,501,143 + +0.4
4,501,144 - +0.4
4,501,144 - -0.9
4,501,196 + -1.5
4,501,196 + +4.7
4,501,197 - +0.4
4,501,197 - +1.1
4,501,197 - +1.8
4,501,197 - -1.6
4,501,924 - +1.2
4,501,933 - -1.6
4,501,933 - -1.2
4,501,933 - +2.0
4,501,933 - -0.6
4,501,933 - -0.1
4,501,933 - -0.2
4,502,079 + AO353_20505 0.32 -1.0
4,502,134 + AO353_20505 0.42 -1.2
4,502,178 + AO353_20505 0.50 -0.8
4,502,178 + AO353_20505 0.50 -0.3
4,502,178 + AO353_20505 0.50 -2.5
4,502,179 - AO353_20505 0.50 +0.4
4,502,179 - AO353_20505 0.50 +0.5
4,502,179 - AO353_20505 0.50 +0.5
4,502,179 - AO353_20505 0.50 +0.0
4,502,184 + AO353_20505 0.51 -1.5
4,502,184 + AO353_20505 0.51 -1.1
4,502,185 - AO353_20505 0.51 -0.4
4,502,185 - AO353_20505 0.51 -0.2
4,502,185 - AO353_20505 0.51 -1.3
4,502,185 - AO353_20505 0.51 +1.2
4,502,185 - AO353_20505 0.51 -0.4

Or see this region's nucleotide sequence