Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_18730 and AO353_18735 are separated by 69 nucleotides AO353_18735 and AO353_18740 are separated by 0 nucleotides AO353_18740 and AO353_18745 overlap by 1 nucleotides
AO353_18730: AO353_18730 - flagellar motor switch protein FliM, at 4,120,712 to 4,121,680
_18730
AO353_18735: AO353_18735 - flagellar motor switch protein, at 4,121,750 to 4,122,211
_18735
AO353_18740: AO353_18740 - flagellar assembly protein FliO, at 4,122,212 to 4,122,643
_18740
AO353_18745: AO353_18745 - flagellar biosynthesis protein flip, at 4,122,643 to 4,123,392
_18745
Position (kb) 4121
4122
4123 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4120.783 kb on - strand at 4120.823 kb on + strand, within AO353_18730 at 4120.823 kb on + strand, within AO353_18730 at 4120.824 kb on - strand at 4120.824 kb on - strand, within AO353_18730 at 4120.824 kb on - strand, within AO353_18730 at 4120.824 kb on - strand, within AO353_18730 at 4120.824 kb on - strand, within AO353_18730 at 4120.824 kb on - strand, within AO353_18730 at 4120.985 kb on + strand, within AO353_18730 at 4120.986 kb on - strand, within AO353_18730 at 4120.986 kb on - strand, within AO353_18730 at 4120.986 kb on - strand, within AO353_18730 at 4120.986 kb on - strand, within AO353_18730 at 4120.986 kb on - strand, within AO353_18730 at 4121.000 kb on + strand, within AO353_18730 at 4121.000 kb on + strand, within AO353_18730 at 4121.001 kb on - strand, within AO353_18730 at 4121.001 kb on - strand at 4121.005 kb on - strand, within AO353_18730 at 4121.005 kb on - strand, within AO353_18730 at 4121.091 kb on + strand, within AO353_18730 at 4121.091 kb on + strand, within AO353_18730 at 4121.092 kb on - strand, within AO353_18730 at 4121.243 kb on + strand, within AO353_18730 at 4121.243 kb on + strand, within AO353_18730 at 4121.244 kb on - strand, within AO353_18730 at 4121.366 kb on + strand, within AO353_18730 at 4121.705 kb on + strand at 4121.705 kb on + strand at 4121.706 kb on - strand at 4121.706 kb on - strand at 4121.767 kb on + strand at 4122.231 kb on + strand at 4122.231 kb on + strand at 4122.231 kb on + strand at 4122.231 kb on + strand at 4122.232 kb on - strand at 4122.232 kb on - strand at 4122.232 kb on - strand at 4122.628 kb on + strand at 4122.628 kb on + strand at 4122.629 kb on - strand at 4122.634 kb on + strand at 4122.634 kb on + strand at 4122.641 kb on + strand at 4122.641 kb on + strand at 4122.641 kb on + strand at 4122.641 kb on + strand at 4122.641 kb on + strand at 4122.641 kb on + strand at 4122.641 kb on + strand at 4122.642 kb on - strand at 4122.642 kb on - strand at 4122.642 kb on - strand at 4122.642 kb on - strand at 4122.642 kb on - strand at 4122.763 kb on + strand, within AO353_18745 at 4122.764 kb on - strand, within AO353_18745 at 4122.997 kb on + strand, within AO353_18745 at 4122.997 kb on + strand, within AO353_18745 at 4122.997 kb on + strand, within AO353_18745
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 4,120,783 - -0.1 4,120,823 + AO353_18730 0.11 -1.3 4,120,823 + AO353_18730 0.11 -0.9 4,120,824 - +1.4 4,120,824 - AO353_18730 0.12 -0.9 4,120,824 - AO353_18730 0.12 -1.3 4,120,824 - AO353_18730 0.12 -1.9 4,120,824 - AO353_18730 0.12 -1.1 4,120,824 - AO353_18730 0.12 +0.5 4,120,985 + AO353_18730 0.28 +1.0 4,120,986 - AO353_18730 0.28 -1.1 4,120,986 - AO353_18730 0.28 -0.9 4,120,986 - AO353_18730 0.28 -0.8 4,120,986 - AO353_18730 0.28 +0.8 4,120,986 - AO353_18730 0.28 -0.1 4,121,000 + AO353_18730 0.30 +1.1 4,121,000 + AO353_18730 0.30 -0.8 4,121,001 - AO353_18730 0.30 -0.2 4,121,001 - +0.4 4,121,005 - AO353_18730 0.30 -0.8 4,121,005 - AO353_18730 0.30 +0.6 4,121,091 + AO353_18730 0.39 +1.9 4,121,091 + AO353_18730 0.39 -1.3 4,121,092 - AO353_18730 0.39 -0.8 4,121,243 + AO353_18730 0.55 -1.7 4,121,243 + AO353_18730 0.55 +1.4 4,121,244 - AO353_18730 0.55 +0.4 4,121,366 + AO353_18730 0.67 +0.4 4,121,705 + +0.3 4,121,705 + -1.7 4,121,706 - +1.9 4,121,706 - -0.9 4,121,767 + -1.9 4,122,231 + +1.1 4,122,231 + -1.9 4,122,231 + -0.2 4,122,231 + +0.5 4,122,232 - -1.4 4,122,232 - +0.9 4,122,232 - -0.2 4,122,628 + -1.5 4,122,628 + -1.0 4,122,629 - +2.0 4,122,634 + -0.1 4,122,634 + +0.1 4,122,641 + +0.2 4,122,641 + +1.2 4,122,641 + -1.4 4,122,641 + -1.1 4,122,641 + -0.2 4,122,641 + -1.2 4,122,641 + -1.6 4,122,642 - -0.6 4,122,642 - +0.2 4,122,642 - +1.1 4,122,642 - +1.1 4,122,642 - +0.4 4,122,763 + AO353_18745 0.16 -1.4 4,122,764 - AO353_18745 0.16 +1.4 4,122,997 + AO353_18745 0.47 +0.7 4,122,997 + AO353_18745 0.47 +1.2 4,122,997 + AO353_18745 0.47 -0.4
Or see this region's nucleotide sequence