Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_17155 and AO353_17160 are separated by 179 nucleotides AO353_17160 and AO353_17165 are separated by 454 nucleotides AO353_17165 and AO353_17170 are separated by 681 nucleotides
AO353_17155: AO353_17155 - RNA polymerase-associated protein RapA, at 3,792,682 to 3,795,528
_17155
AO353_17160: AO353_17160 - aspartate-semialdehyde dehydrogenase, at 3,795,708 to 3,796,049
_17160
AO353_17165: AO353_17165 - ATP-dependent helicase, at 3,796,504 to 3,796,620
_17165
AO353_17170: AO353_17170 - nuclease PIN, at 3,797,302 to 3,798,777
_17170
Position (kb)
3796
3797 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3795.515 kb on + strand at 3795.516 kb on - strand at 3795.516 kb on - strand at 3795.516 kb on - strand at 3795.516 kb on - strand at 3795.516 kb on - strand at 3795.560 kb on + strand at 3795.560 kb on + strand at 3795.560 kb on + strand at 3795.560 kb on + strand at 3795.560 kb on + strand at 3795.561 kb on - strand at 3795.561 kb on - strand at 3795.561 kb on - strand at 3795.561 kb on - strand at 3795.561 kb on - strand at 3795.562 kb on + strand at 3795.562 kb on + strand at 3795.562 kb on + strand at 3795.562 kb on + strand at 3795.562 kb on + strand at 3795.562 kb on + strand at 3795.562 kb on + strand at 3795.562 kb on + strand at 3795.562 kb on + strand at 3795.563 kb on - strand at 3795.563 kb on - strand at 3795.563 kb on - strand at 3795.603 kb on + strand at 3795.603 kb on + strand at 3795.604 kb on - strand at 3795.700 kb on + strand at 3795.700 kb on + strand at 3795.700 kb on + strand at 3795.701 kb on - strand at 3795.701 kb on - strand at 3795.703 kb on + strand at 3795.703 kb on + strand at 3795.703 kb on + strand at 3795.703 kb on + strand at 3795.704 kb on - strand at 3795.704 kb on - strand at 3795.704 kb on - strand at 3795.704 kb on - strand at 3795.704 kb on - strand at 3795.747 kb on - strand, within AO353_17160 at 3795.824 kb on + strand, within AO353_17160 at 3795.825 kb on - strand, within AO353_17160 at 3796.054 kb on + strand at 3796.055 kb on - strand at 3796.055 kb on - strand at 3796.055 kb on - strand at 3796.055 kb on - strand at 3796.055 kb on - strand at 3796.149 kb on + strand at 3796.149 kb on + strand at 3796.149 kb on + strand at 3796.150 kb on - strand at 3796.150 kb on - strand at 3796.161 kb on + strand at 3796.162 kb on - strand at 3796.162 kb on - strand at 3796.162 kb on - strand at 3796.169 kb on + strand at 3796.169 kb on + strand at 3796.170 kb on - strand at 3796.186 kb on + strand at 3796.186 kb on + strand at 3796.186 kb on + strand at 3796.186 kb on + strand at 3796.186 kb on + strand at 3796.186 kb on + strand at 3796.186 kb on + strand at 3796.187 kb on - strand at 3796.187 kb on - strand at 3796.187 kb on - strand at 3796.187 kb on - strand at 3796.187 kb on - strand at 3796.187 kb on - strand at 3796.187 kb on - strand at 3796.187 kb on - strand at 3796.187 kb on - strand at 3796.260 kb on - strand at 3796.260 kb on - strand at 3796.260 kb on - strand at 3796.467 kb on - strand at 3796.602 kb on + strand, within AO353_17165 at 3796.603 kb on - strand, within AO353_17165 at 3796.603 kb on - strand, within AO353_17165 at 3796.603 kb on - strand, within AO353_17165 at 3796.603 kb on - strand, within AO353_17165 at 3796.603 kb on - strand, within AO353_17165 at 3796.608 kb on + strand, within AO353_17165 at 3796.609 kb on - strand at 3796.618 kb on + strand at 3796.713 kb on + strand at 3796.713 kb on + strand at 3796.713 kb on + strand at 3796.713 kb on + strand at 3796.713 kb on - strand at 3796.714 kb on - strand at 3796.714 kb on - strand at 3796.714 kb on - strand at 3796.714 kb on - strand at 3796.714 kb on - strand at 3796.714 kb on - strand at 3796.714 kb on - strand at 3796.714 kb on - strand at 3796.714 kb on - strand at 3796.714 kb on - strand at 3796.719 kb on + strand at 3796.719 kb on + strand at 3796.719 kb on + strand at 3796.719 kb on + strand at 3796.720 kb on - strand at 3796.720 kb on - strand at 3796.720 kb on - strand at 3796.720 kb on - strand at 3796.720 kb on - strand at 3796.737 kb on - strand at 3796.793 kb on + strand at 3796.793 kb on + strand at 3796.793 kb on + strand at 3796.793 kb on + strand at 3796.793 kb on + strand at 3796.793 kb on + strand at 3796.794 kb on - strand at 3796.794 kb on - strand at 3796.794 kb on - strand at 3796.794 kb on - strand at 3796.794 kb on - strand at 3796.794 kb on - strand at 3796.794 kb on - strand at 3796.797 kb on + strand at 3796.797 kb on + strand at 3796.798 kb on - strand at 3796.798 kb on - strand at 3796.798 kb on - strand at 3796.798 kb on - strand at 3796.798 kb on - strand at 3796.971 kb on - strand at 3797.131 kb on + strand at 3797.131 kb on + strand at 3797.148 kb on + strand at 3797.149 kb on - strand at 3797.149 kb on - strand at 3797.149 kb on - strand at 3797.252 kb on - strand at 3797.299 kb on - strand at 3797.299 kb on - strand at 3797.299 kb on - strand at 3797.299 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 3,795,515 + -0.9 3,795,516 - -1.4 3,795,516 - +1.2 3,795,516 - -1.1 3,795,516 - -0.4 3,795,516 - +1.2 3,795,560 + -0.3 3,795,560 + -0.4 3,795,560 + +0.3 3,795,560 + -0.1 3,795,560 + -0.5 3,795,561 - -1.4 3,795,561 - +2.0 3,795,561 - -0.4 3,795,561 - -1.0 3,795,561 - -0.8 3,795,562 + -0.6 3,795,562 + -0.9 3,795,562 + -0.4 3,795,562 + +0.6 3,795,562 + -0.0 3,795,562 + +0.6 3,795,562 + -0.8 3,795,562 + -0.8 3,795,562 + +1.4 3,795,563 - -2.4 3,795,563 - -0.6 3,795,563 - -0.8 3,795,603 + -0.1 3,795,603 + +0.0 3,795,604 - -0.1 3,795,700 + -1.0 3,795,700 + -1.8 3,795,700 + -1.1 3,795,701 - +0.2 3,795,701 - -1.1 3,795,703 + +0.6 3,795,703 + +0.6 3,795,703 + +2.6 3,795,703 + +1.0 3,795,704 - +1.4 3,795,704 - -0.3 3,795,704 - -2.4 3,795,704 - +0.2 3,795,704 - +1.2 3,795,747 - AO353_17160 0.11 +0.6 3,795,824 + AO353_17160 0.34 +0.5 3,795,825 - AO353_17160 0.34 -1.5 3,796,054 + +0.6 3,796,055 - +0.1 3,796,055 - -1.0 3,796,055 - -0.1 3,796,055 - +0.6 3,796,055 - +0.7 3,796,149 + -0.8 3,796,149 + +0.6 3,796,149 + +0.6 3,796,150 - +0.2 3,796,150 - +1.6 3,796,161 + -1.5 3,796,162 - +0.6 3,796,162 - -1.4 3,796,162 - +0.0 3,796,169 + -0.4 3,796,169 + +0.2 3,796,170 - -2.2 3,796,186 + -1.2 3,796,186 + +1.6 3,796,186 + +0.0 3,796,186 + -0.3 3,796,186 + +1.0 3,796,186 + -0.2 3,796,186 + -1.0 3,796,187 - -0.6 3,796,187 - -0.8 3,796,187 - -1.9 3,796,187 - +0.6 3,796,187 - -0.1 3,796,187 - -1.7 3,796,187 - +0.8 3,796,187 - -1.1 3,796,187 - -0.7 3,796,260 - -0.0 3,796,260 - +0.2 3,796,260 - -0.4 3,796,467 - -1.3 3,796,602 + AO353_17165 0.84 -2.1 3,796,603 - AO353_17165 0.85 -2.3 3,796,603 - AO353_17165 0.85 -1.0 3,796,603 - AO353_17165 0.85 +0.2 3,796,603 - AO353_17165 0.85 +2.1 3,796,603 - AO353_17165 0.85 -1.6 3,796,608 + AO353_17165 0.89 -0.6 3,796,609 - -2.3 3,796,618 + -0.4 3,796,713 + +0.2 3,796,713 + +0.2 3,796,713 + -0.0 3,796,713 + +0.2 3,796,713 - +1.3 3,796,714 - +0.4 3,796,714 - +2.0 3,796,714 - +1.0 3,796,714 - -2.2 3,796,714 - +0.4 3,796,714 - +0.7 3,796,714 - -2.0 3,796,714 - -0.0 3,796,714 - +1.0 3,796,714 - +1.9 3,796,719 + +0.6 3,796,719 + +1.3 3,796,719 + -0.6 3,796,719 + -0.1 3,796,720 - -1.9 3,796,720 - -1.8 3,796,720 - -0.7 3,796,720 - +0.5 3,796,720 - -1.6 3,796,737 - -0.8 3,796,793 + -0.4 3,796,793 + -0.3 3,796,793 + +0.4 3,796,793 + +0.2 3,796,793 + +1.1 3,796,793 + +1.0 3,796,794 - -1.0 3,796,794 - -0.3 3,796,794 - -2.3 3,796,794 - +0.6 3,796,794 - -1.5 3,796,794 - -1.7 3,796,794 - -1.4 3,796,797 + -0.4 3,796,797 + -0.4 3,796,798 - +0.6 3,796,798 - -0.4 3,796,798 - -0.1 3,796,798 - -0.9 3,796,798 - +0.3 3,796,971 - -1.1 3,797,131 + -0.6 3,797,131 + -0.9 3,797,148 + -1.0 3,797,149 - -0.0 3,797,149 - -1.1 3,797,149 - -0.4 3,797,252 - +0.2 3,797,299 - -0.3 3,797,299 - +0.2 3,797,299 - -1.0 3,797,299 - -1.1
Or see this region's nucleotide sequence