Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_13865

Experiment: Sisomicin 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_13860 and AO353_13865 are separated by 389 nucleotidesAO353_13865 and AO353_13870 are separated by 20 nucleotidesAO353_13870 and AO353_13875 are separated by 2 nucleotides AO353_13860: AO353_13860 - hypothetical protein, at 3,078,381 to 3,080,162 _13860 AO353_13865: AO353_13865 - hypothetical protein, at 3,080,552 to 3,081,001 _13865 AO353_13870: AO353_13870 - acyl dehydratase, at 3,081,022 to 3,081,876 _13870 AO353_13875: AO353_13875 - 3-ketoacyl-ACP reductase, at 3,081,879 to 3,083,231 _13875 Position (kb) 3080 3081 3082Strain fitness (log2 ratio) -2 -1 0 1 2at 3079.563 kb on + strand, within AO353_13860at 3079.563 kb on + strand, within AO353_13860at 3079.563 kb on + strand, within AO353_13860at 3079.563 kb on + strand, within AO353_13860at 3079.564 kb on - strand, within AO353_13860at 3079.564 kb on - strand, within AO353_13860at 3079.564 kb on - strand, within AO353_13860at 3079.564 kb on - strand, within AO353_13860at 3079.577 kb on + strand, within AO353_13860at 3079.577 kb on + strand, within AO353_13860at 3079.578 kb on - strand, within AO353_13860at 3079.578 kb on - strand, within AO353_13860at 3079.601 kb on + strand, within AO353_13860at 3079.602 kb on - strand, within AO353_13860at 3079.602 kb on - strand, within AO353_13860at 3079.835 kb on + strand, within AO353_13860at 3079.835 kb on + strand, within AO353_13860at 3079.835 kb on + strand, within AO353_13860at 3079.835 kb on + strand, within AO353_13860at 3080.132 kb on + strandat 3080.166 kb on + strandat 3080.166 kb on + strandat 3080.167 kb on - strandat 3080.167 kb on - strandat 3080.167 kb on - strandat 3080.167 kb on - strandat 3080.167 kb on - strandat 3080.248 kb on + strandat 3080.248 kb on + strandat 3080.248 kb on + strandat 3080.248 kb on + strandat 3080.248 kb on + strandat 3080.248 kb on + strandat 3080.248 kb on + strandat 3080.248 kb on + strandat 3080.248 kb on + strandat 3080.249 kb on - strandat 3080.249 kb on - strandat 3080.249 kb on - strandat 3080.249 kb on - strandat 3080.249 kb on - strandat 3080.252 kb on + strandat 3080.253 kb on - strandat 3080.253 kb on - strandat 3080.253 kb on - strandat 3080.253 kb on - strandat 3080.256 kb on + strandat 3080.256 kb on + strandat 3080.256 kb on + strandat 3080.256 kb on + strandat 3080.256 kb on + strandat 3080.256 kb on + strandat 3080.256 kb on + strandat 3080.256 kb on + strandat 3080.257 kb on - strandat 3080.257 kb on - strandat 3080.257 kb on - strandat 3080.257 kb on - strandat 3080.296 kb on - strandat 3080.303 kb on + strandat 3080.303 kb on + strandat 3080.303 kb on + strandat 3080.303 kb on + strandat 3080.303 kb on + strandat 3080.303 kb on + strandat 3080.303 kb on + strandat 3080.303 kb on + strandat 3080.303 kb on + strandat 3080.303 kb on + strandat 3080.303 kb on + strandat 3080.304 kb on - strandat 3080.304 kb on - strandat 3080.304 kb on - strandat 3080.304 kb on - strandat 3080.304 kb on - strandat 3080.304 kb on - strandat 3080.304 kb on - strandat 3080.305 kb on + strandat 3080.305 kb on + strandat 3080.305 kb on + strandat 3080.305 kb on + strandat 3080.305 kb on + strandat 3080.305 kb on + strandat 3080.305 kb on + strandat 3080.305 kb on + strandat 3080.306 kb on - strandat 3080.306 kb on - strandat 3080.306 kb on - strandat 3080.306 kb on - strandat 3080.306 kb on - strandat 3080.306 kb on - strandat 3080.306 kb on - strandat 3080.306 kb on - strandat 3080.306 kb on - strandat 3080.306 kb on - strandat 3080.306 kb on - strandat 3080.306 kb on - strandat 3080.306 kb on - strandat 3080.306 kb on - strandat 3080.307 kb on + strandat 3080.307 kb on + strandat 3080.308 kb on - strandat 3080.308 kb on - strandat 3080.324 kb on + strandat 3080.324 kb on + strandat 3080.324 kb on + strandat 3080.325 kb on - strandat 3080.338 kb on + strandat 3080.339 kb on - strandat 3080.368 kb on - strandat 3080.369 kb on + strandat 3080.369 kb on + strandat 3080.370 kb on - strandat 3080.373 kb on - strandat 3080.382 kb on - strandat 3080.439 kb on + strandat 3080.439 kb on + strandat 3080.439 kb on + strandat 3080.440 kb on - strandat 3080.440 kb on - strandat 3080.440 kb on - strandat 3080.441 kb on + strandat 3080.441 kb on + strandat 3080.441 kb on + strandat 3080.441 kb on + strandat 3080.441 kb on + strandat 3080.441 kb on + strandat 3080.441 kb on + strandat 3080.442 kb on - strandat 3080.442 kb on - strandat 3080.442 kb on - strandat 3080.442 kb on - strandat 3080.442 kb on - strandat 3080.443 kb on + strandat 3080.443 kb on + strandat 3080.443 kb on + strandat 3080.443 kb on + strandat 3080.443 kb on + strandat 3080.443 kb on + strandat 3080.443 kb on + strandat 3080.443 kb on + strandat 3080.443 kb on + strandat 3080.444 kb on - strandat 3080.444 kb on - strandat 3080.444 kb on - strandat 3080.444 kb on - strandat 3080.444 kb on - strandat 3080.444 kb on - strandat 3080.444 kb on - strandat 3080.444 kb on - strandat 3080.444 kb on - strandat 3080.444 kb on - strandat 3080.445 kb on + strandat 3080.445 kb on + strandat 3080.445 kb on + strandat 3080.445 kb on + strandat 3080.447 kb on + strandat 3080.447 kb on + strandat 3080.448 kb on - strandat 3080.516 kb on + strandat 3080.517 kb on - strandat 3080.519 kb on - strandat 3080.519 kb on - strandat 3080.519 kb on - strandat 3080.534 kb on + strandat 3080.534 kb on + strandat 3080.534 kb on + strandat 3080.535 kb on - strandat 3080.624 kb on - strand, within AO353_13865at 3080.658 kb on + strand, within AO353_13865at 3080.804 kb on - strand, within AO353_13865at 3080.807 kb on - strand, within AO353_13865at 3081.296 kb on + strand, within AO353_13870at 3081.296 kb on + strand, within AO353_13870at 3081.297 kb on - strand, within AO353_13870at 3081.297 kb on - strand, within AO353_13870at 3081.297 kb on - strand, within AO353_13870at 3081.297 kb on - strand, within AO353_13870at 3081.297 kb on - strand, within AO353_13870at 3081.297 kb on - strand, within AO353_13870at 3081.677 kb on + strand, within AO353_13870at 3081.677 kb on + strand, within AO353_13870at 3081.677 kb on + strand, within AO353_13870at 3081.677 kb on + strand, within AO353_13870at 3081.677 kb on + strand, within AO353_13870at 3081.678 kb on - strand, within AO353_13870at 3081.678 kb on - strand, within AO353_13870at 3081.678 kb on - strand, within AO353_13870at 3081.678 kb on - strand, within AO353_13870at 3081.678 kb on - strand, within AO353_13870at 3081.678 kb on - strand, within AO353_13870at 3081.678 kb on - strand, within AO353_13870at 3081.725 kb on + strand, within AO353_13870at 3081.726 kb on - strand, within AO353_13870at 3081.824 kb on + strandat 3081.839 kb on + strandat 3081.839 kb on + strandat 3081.839 kb on + strandat 3081.840 kb on - strandat 3081.840 kb on - strandat 3081.840 kb on - strandat 3081.840 kb on - strandat 3081.840 kb on - strandat 3081.840 kb on - strandat 3081.840 kb on - strandat 3081.846 kb on + strandat 3081.846 kb on + strandat 3081.846 kb on + strandat 3081.846 kb on + strandat 3081.846 kb on + strandat 3081.846 kb on + strandat 3081.846 kb on + strandat 3081.846 kb on + strandat 3081.846 kb on + strandat 3081.846 kb on + strandat 3081.846 kb on + strandat 3081.846 kb on + strandat 3081.846 kb on + strandat 3081.847 kb on - strandat 3081.847 kb on - strandat 3081.847 kb on - strandat 3081.847 kb on - strandat 3081.847 kb on - strandat 3081.847 kb on - strandat 3081.847 kb on - strandat 3081.847 kb on - strandat 3081.847 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
remove
3,079,563 + AO353_13860 0.66 +0.4
3,079,563 + AO353_13860 0.66 -1.7
3,079,563 + AO353_13860 0.66 -1.6
3,079,563 + AO353_13860 0.66 +1.2
3,079,564 - AO353_13860 0.66 +1.0
3,079,564 - AO353_13860 0.66 -0.6
3,079,564 - AO353_13860 0.66 -0.7
3,079,564 - AO353_13860 0.66 +0.2
3,079,577 + AO353_13860 0.67 -1.2
3,079,577 + AO353_13860 0.67 -0.7
3,079,578 - AO353_13860 0.67 +0.1
3,079,578 - AO353_13860 0.67 -1.1
3,079,601 + AO353_13860 0.68 -0.6
3,079,602 - AO353_13860 0.69 +1.3
3,079,602 - AO353_13860 0.69 +0.0
3,079,835 + AO353_13860 0.82 -2.1
3,079,835 + AO353_13860 0.82 +1.3
3,079,835 + AO353_13860 0.82 -1.4
3,079,835 + AO353_13860 0.82 -1.0
3,080,132 + -0.1
3,080,166 + +0.2
3,080,166 + -2.0
3,080,167 - -1.3
3,080,167 - +0.3
3,080,167 - -1.7
3,080,167 - -0.1
3,080,167 - -1.1
3,080,248 + -0.3
3,080,248 + +0.2
3,080,248 + -2.0
3,080,248 + -2.3
3,080,248 + -1.3
3,080,248 + -0.8
3,080,248 + +0.4
3,080,248 + +1.2
3,080,248 + +0.7
3,080,249 - +2.2
3,080,249 - +0.9
3,080,249 - -0.8
3,080,249 - -0.8
3,080,249 - +0.6
3,080,252 + -1.2
3,080,253 - -0.4
3,080,253 - -0.2
3,080,253 - -1.1
3,080,253 - +0.7
3,080,256 + +0.2
3,080,256 + -0.4
3,080,256 + -0.3
3,080,256 + +0.2
3,080,256 + -0.4
3,080,256 + -1.7
3,080,256 + -1.0
3,080,256 + +0.7
3,080,257 - -1.8
3,080,257 - +0.4
3,080,257 - -1.0
3,080,257 - +0.4
3,080,296 - -0.7
3,080,303 + -0.6
3,080,303 + -0.5
3,080,303 + -1.3
3,080,303 + -0.7
3,080,303 + -2.1
3,080,303 + -0.3
3,080,303 + -0.1
3,080,303 + -1.3
3,080,303 + -2.2
3,080,303 + +0.2
3,080,303 + -0.6
3,080,304 - -0.8
3,080,304 - -0.3
3,080,304 - -2.0
3,080,304 - +0.0
3,080,304 - -0.5
3,080,304 - -2.1
3,080,304 - +0.8
3,080,305 + +0.2
3,080,305 + -0.8
3,080,305 + -0.7
3,080,305 + -0.8
3,080,305 + -0.4
3,080,305 + +0.6
3,080,305 + +0.3
3,080,305 + +1.7
3,080,306 - -1.8
3,080,306 - +0.4
3,080,306 - -0.3
3,080,306 - -0.2
3,080,306 - -1.3
3,080,306 - -0.7
3,080,306 - -0.6
3,080,306 - -1.0
3,080,306 - +1.3
3,080,306 - -1.8
3,080,306 - -0.0
3,080,306 - -0.8
3,080,306 - -0.3
3,080,306 - +0.0
3,080,307 + +0.0
3,080,307 + +1.7
3,080,308 - +0.4
3,080,308 - +0.6
3,080,324 + -0.6
3,080,324 + +0.7
3,080,324 + -0.8
3,080,325 - -0.5
3,080,338 + +0.4
3,080,339 - -2.2
3,080,368 - +0.6
3,080,369 + +2.4
3,080,369 + -0.4
3,080,370 - -1.7
3,080,373 - -1.5
3,080,382 - +1.1
3,080,439 + +0.2
3,080,439 + +0.9
3,080,439 + -0.1
3,080,440 - +0.7
3,080,440 - -1.3
3,080,440 - +0.2
3,080,441 + -1.1
3,080,441 + +0.9
3,080,441 + -0.1
3,080,441 + +0.7
3,080,441 + -1.9
3,080,441 + -1.0
3,080,441 + -0.1
3,080,442 - -0.8
3,080,442 - -0.5
3,080,442 - -2.1
3,080,442 - +1.5
3,080,442 - -0.7
3,080,443 + +0.7
3,080,443 + -1.1
3,080,443 + -0.7
3,080,443 + -0.5
3,080,443 + -1.7
3,080,443 + -0.1
3,080,443 + -0.7
3,080,443 + -1.3
3,080,443 + +0.5
3,080,444 - -0.6
3,080,444 - +0.4
3,080,444 - -1.4
3,080,444 - +0.2
3,080,444 - -1.1
3,080,444 - +0.7
3,080,444 - -2.1
3,080,444 - +0.4
3,080,444 - -1.9
3,080,444 - -0.8
3,080,445 + -1.0
3,080,445 + +1.2
3,080,445 + -0.3
3,080,445 + -0.6
3,080,447 + +0.7
3,080,447 + -0.1
3,080,448 - -0.6
3,080,516 + +0.4
3,080,517 - +0.5
3,080,519 - -0.3
3,080,519 - -0.7
3,080,519 - +0.6
3,080,534 + +0.6
3,080,534 + +0.8
3,080,534 + -0.1
3,080,535 - -0.5
3,080,624 - AO353_13865 0.16 -2.1
3,080,658 + AO353_13865 0.24 -0.4
3,080,804 - AO353_13865 0.56 -0.2
3,080,807 - AO353_13865 0.57 -1.6
3,081,296 + AO353_13870 0.32 -1.3
3,081,296 + AO353_13870 0.32 +1.3
3,081,297 - AO353_13870 0.32 +1.4
3,081,297 - AO353_13870 0.32 +1.2
3,081,297 - AO353_13870 0.32 +0.5
3,081,297 - AO353_13870 0.32 -0.2
3,081,297 - AO353_13870 0.32 -0.3
3,081,297 - AO353_13870 0.32 +1.4
3,081,677 + AO353_13870 0.77 +1.2
3,081,677 + AO353_13870 0.77 -1.3
3,081,677 + AO353_13870 0.77 -1.8
3,081,677 + AO353_13870 0.77 +1.0
3,081,677 + AO353_13870 0.77 -0.6
3,081,678 - AO353_13870 0.77 -0.3
3,081,678 - AO353_13870 0.77 -1.5
3,081,678 - AO353_13870 0.77 -1.9
3,081,678 - AO353_13870 0.77 -0.3
3,081,678 - AO353_13870 0.77 +0.3
3,081,678 - AO353_13870 0.77 -1.6
3,081,678 - AO353_13870 0.77 +0.2
3,081,725 + AO353_13870 0.82 -1.6
3,081,726 - AO353_13870 0.82 +0.8
3,081,824 + -0.1
3,081,839 + -0.3
3,081,839 + +0.4
3,081,839 + -0.4
3,081,840 - -1.0
3,081,840 - -0.3
3,081,840 - -0.6
3,081,840 - -0.6
3,081,840 - -0.6
3,081,840 - +1.4
3,081,840 - -1.0
3,081,846 + +0.2
3,081,846 + -0.6
3,081,846 + -1.5
3,081,846 + -0.3
3,081,846 + -2.7
3,081,846 + -0.7
3,081,846 + +2.2
3,081,846 + +0.0
3,081,846 + -0.7
3,081,846 + -1.0
3,081,846 + +1.9
3,081,846 + +0.2
3,081,846 + -0.2
3,081,847 - +0.7
3,081,847 - -1.3
3,081,847 - +0.4
3,081,847 - +0.7
3,081,847 - -0.6
3,081,847 - +0.9
3,081,847 - -0.0
3,081,847 - +0.3
3,081,847 - +0.2

Or see this region's nucleotide sequence