Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_13120 and AO353_13125 overlap by 13 nucleotides AO353_13125 and AO353_13130 are separated by 0 nucleotides AO353_13130 and AO353_13135 overlap by 4 nucleotides
AO353_13120: AO353_13120 - carbohydrate kinase, at 2,907,222 to 2,908,721
_13120
AO353_13125: AO353_13125 - tRNA threonylcarbamoyladenosine biosynthesis protein TsaE, at 2,908,709 to 2,909,179
_13125
AO353_13130: AO353_13130 - N-acetylmuramoyl-L-alanine amidase, at 2,909,180 to 2,910,616
_13130
AO353_13135: AO353_13135 - DNA mismatch repair protein, at 2,910,613 to 2,912,523
_13135
Position (kb)
2909
2910
2911 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2908.352 kb on - strand, within AO353_13120 at 2908.419 kb on + strand, within AO353_13120 at 2908.419 kb on + strand, within AO353_13120 at 2908.637 kb on + strand at 2908.637 kb on + strand at 2908.638 kb on - strand at 2908.638 kb on - strand at 2908.719 kb on + strand at 2908.719 kb on + strand at 2908.719 kb on + strand at 2908.727 kb on + strand at 2909.177 kb on + strand at 2909.177 kb on + strand at 2909.194 kb on + strand at 2909.194 kb on + strand at 2909.194 kb on + strand at 2910.410 kb on + strand, within AO353_13130 at 2910.410 kb on + strand, within AO353_13130 at 2910.410 kb on + strand, within AO353_13130 at 2910.410 kb on + strand, within AO353_13130 at 2910.410 kb on + strand, within AO353_13130 at 2910.410 kb on + strand, within AO353_13130 at 2910.410 kb on + strand, within AO353_13130 at 2910.411 kb on - strand, within AO353_13130 at 2910.759 kb on + strand at 2910.759 kb on + strand at 2910.759 kb on + strand at 2910.760 kb on - strand at 2911.397 kb on - strand, within AO353_13135 at 2911.459 kb on + strand, within AO353_13135 at 2911.600 kb on + strand, within AO353_13135 at 2911.600 kb on + strand, within AO353_13135 at 2911.600 kb on + strand, within AO353_13135 at 2911.601 kb on - strand, within AO353_13135 at 2911.601 kb on - strand, within AO353_13135 at 2911.601 kb on - strand, within AO353_13135
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 2,908,352 - AO353_13120 0.75 -0.9 2,908,419 + AO353_13120 0.80 +2.8 2,908,419 + AO353_13120 0.80 -0.2 2,908,637 + +1.5 2,908,637 + -0.6 2,908,638 - +1.8 2,908,638 - -1.5 2,908,719 + -1.4 2,908,719 + -0.1 2,908,719 + +0.0 2,908,727 + -0.9 2,909,177 + +0.5 2,909,177 + +0.1 2,909,194 + -0.7 2,909,194 + -1.9 2,909,194 + +0.0 2,910,410 + AO353_13130 0.86 -2.5 2,910,410 + AO353_13130 0.86 -1.3 2,910,410 + AO353_13130 0.86 -1.2 2,910,410 + AO353_13130 0.86 -0.7 2,910,410 + AO353_13130 0.86 -1.1 2,910,410 + AO353_13130 0.86 -1.4 2,910,410 + AO353_13130 0.86 -2.8 2,910,411 - AO353_13130 0.86 -0.2 2,910,759 + -0.3 2,910,759 + +1.1 2,910,759 + -0.3 2,910,760 - +0.5 2,911,397 - AO353_13135 0.41 -0.6 2,911,459 + AO353_13135 0.44 -1.4 2,911,600 + AO353_13135 0.52 -3.0 2,911,600 + AO353_13135 0.52 -2.3 2,911,600 + AO353_13135 0.52 +0.0 2,911,601 - AO353_13135 0.52 -0.2 2,911,601 - AO353_13135 0.52 -1.2 2,911,601 - AO353_13135 0.52 -0.1
Or see this region's nucleotide sequence