Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12375

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_12370 and AO353_12375 overlap by 4 nucleotidesAO353_12375 and AO353_12380 overlap by 1 nucleotidesAO353_12380 and AO353_12385 are separated by 155 nucleotides AO353_12370: AO353_12370 - ubiquinone biosynthesis protein UbiB, at 2,720,692 to 2,722,296 _12370 AO353_12375: AO353_12375 - sterol-binding protein, at 2,722,293 to 2,722,916 _12375 AO353_12380: AO353_12380 - ubiquinone biosynthesis methyltransferase UbiE, at 2,722,916 to 2,723,686 _12380 AO353_12385: AO353_12385 - polyhydroxyalkanoic acid system protein, at 2,723,842 to 2,724,117 _12385 Position (kb) 2722 2723Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 2722.559 kb on - strand, within AO353_12375at 2723.721 kb on - strandat 2723.721 kb on - strandat 2723.721 kb on - strandat 2723.721 kb on - strandat 2723.759 kb on + strandat 2723.759 kb on + strandat 2723.759 kb on + strandat 2723.759 kb on + strandat 2723.759 kb on + strandat 2723.759 kb on + strandat 2723.759 kb on + strandat 2723.760 kb on - strandat 2723.760 kb on - strandat 2723.760 kb on - strandat 2723.760 kb on - strandat 2723.760 kb on - strandat 2723.760 kb on - strandat 2723.760 kb on - strandat 2723.760 kb on - strandat 2723.760 kb on - strandat 2723.760 kb on - strandat 2723.764 kb on + strandat 2723.764 kb on + strandat 2723.764 kb on + strandat 2723.764 kb on + strandat 2723.764 kb on + strandat 2723.765 kb on - strandat 2723.765 kb on - strandat 2723.765 kb on - strandat 2723.765 kb on - strandat 2723.850 kb on + strandat 2723.850 kb on + strandat 2723.850 kb on + strandat 2723.850 kb on + strandat 2723.850 kb on + strandat 2723.853 kb on + strandat 2723.853 kb on + strandat 2723.853 kb on + strandat 2723.853 kb on + strandat 2723.853 kb on + strandat 2723.853 kb on + strandat 2723.854 kb on - strandat 2723.854 kb on - strandat 2723.854 kb on - strandat 2723.854 kb on - strandat 2723.854 kb on - strandat 2723.854 kb on - strandat 2723.854 kb on - strandat 2723.854 kb on - strandat 2723.854 kb on - strandat 2723.854 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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2,722,559 - AO353_12375 0.43 +4.1
2,723,721 - +0.3
2,723,721 - +1.0
2,723,721 - -0.5
2,723,721 - -0.0
2,723,759 + +4.0
2,723,759 + +3.0
2,723,759 + +2.2
2,723,759 + +3.3
2,723,759 + +2.0
2,723,759 + +1.0
2,723,759 + +2.9
2,723,760 - +1.5
2,723,760 - +1.5
2,723,760 - -0.0
2,723,760 - -0.3
2,723,760 - +1.6
2,723,760 - -0.3
2,723,760 - +0.5
2,723,760 - +1.4
2,723,760 - +1.0
2,723,760 - +0.5
2,723,764 + +2.4
2,723,764 + +5.4
2,723,764 + +4.9
2,723,764 + +3.0
2,723,764 + +4.2
2,723,765 - +1.7
2,723,765 - -0.3
2,723,765 - -0.0
2,723,765 - -0.0
2,723,850 + +0.7
2,723,850 + -0.0
2,723,850 + +1.1
2,723,850 + +1.7
2,723,850 + +0.0
2,723,853 + +0.9
2,723,853 + +1.1
2,723,853 + +1.5
2,723,853 + +1.9
2,723,853 + +1.8
2,723,853 + +1.7
2,723,854 - -0.8
2,723,854 - -0.3
2,723,854 - -1.1
2,723,854 - -0.1
2,723,854 - +1.4
2,723,854 - +0.3
2,723,854 - -0.5
2,723,854 - +2.0
2,723,854 - -0.7
2,723,854 - -0.2

Or see this region's nucleotide sequence