Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_11880

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_11870 and AO353_11875 overlap by 4 nucleotidesAO353_11875 and AO353_11880 overlap by 4 nucleotidesAO353_11880 and AO353_11885 overlap by 4 nucleotides AO353_11870: AO353_11870 - dTDP-4-dehydrorhamnose reductase, at 2,619,055 to 2,619,936 _11870 AO353_11875: AO353_11875 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 2,619,933 to 2,620,478 _11875 AO353_11880: AO353_11880 - glucose-1-phosphate thymidylyltransferase, at 2,620,475 to 2,621,350 _11880 AO353_11885: AO353_11885 - dTDP-glucose 4,6-dehydratase, at 2,621,347 to 2,622,429 _11885 Position (kb) 2620 2621 2622Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 2621.396 kb on + strandat 2621.396 kb on + strandat 2621.396 kb on + strandat 2621.396 kb on + strandat 2621.396 kb on + strandat 2621.397 kb on - strandat 2621.397 kb on - strandat 2621.397 kb on - strandat 2621.397 kb on - strandat 2621.397 kb on - strandat 2621.428 kb on + strandat 2621.428 kb on + strandat 2621.428 kb on + strandat 2621.428 kb on + strandat 2621.428 kb on + strandat 2621.428 kb on + strandat 2621.429 kb on - strandat 2621.429 kb on - strandat 2621.429 kb on - strandat 2621.429 kb on - strandat 2621.429 kb on - strandat 2621.429 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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2,621,396 + +3.2
2,621,396 + +3.2
2,621,396 + +3.0
2,621,396 + +3.9
2,621,396 + +3.1
2,621,397 - +1.2
2,621,397 - +3.8
2,621,397 - -1.1
2,621,397 - -0.9
2,621,397 - -1.3
2,621,428 + +5.2
2,621,428 + +2.6
2,621,428 + +2.5
2,621,428 + +4.1
2,621,428 + +2.3
2,621,428 + +0.1
2,621,429 - +2.3
2,621,429 - +0.6
2,621,429 - -0.1
2,621,429 - +0.9
2,621,429 - +0.5
2,621,429 - +0.2

Or see this region's nucleotide sequence