Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_11870 and AO353_11875 overlap by 4 nucleotides AO353_11875 and AO353_11880 overlap by 4 nucleotides AO353_11880 and AO353_11885 overlap by 4 nucleotides
AO353_11870: AO353_11870 - dTDP-4-dehydrorhamnose reductase, at 2,619,055 to 2,619,936
_11870
AO353_11875: AO353_11875 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 2,619,933 to 2,620,478
_11875
AO353_11880: AO353_11880 - glucose-1-phosphate thymidylyltransferase, at 2,620,475 to 2,621,350
_11880
AO353_11885: AO353_11885 - dTDP-glucose 4,6-dehydratase, at 2,621,347 to 2,622,429
_11885
Position (kb)
2620
2621
2622 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5 at 2621.396 kb on + strand at 2621.396 kb on + strand at 2621.396 kb on + strand at 2621.396 kb on + strand at 2621.396 kb on + strand at 2621.397 kb on - strand at 2621.397 kb on - strand at 2621.397 kb on - strand at 2621.397 kb on - strand at 2621.397 kb on - strand at 2621.428 kb on + strand at 2621.428 kb on + strand at 2621.428 kb on + strand at 2621.428 kb on + strand at 2621.428 kb on + strand at 2621.428 kb on + strand at 2621.429 kb on - strand at 2621.429 kb on - strand at 2621.429 kb on - strand at 2621.429 kb on - strand at 2621.429 kb on - strand at 2621.429 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 2,621,396 + +3.2 2,621,396 + +3.2 2,621,396 + +3.0 2,621,396 + +3.9 2,621,396 + +3.1 2,621,397 - +1.2 2,621,397 - +3.8 2,621,397 - -1.1 2,621,397 - -0.9 2,621,397 - -1.3 2,621,428 + +5.2 2,621,428 + +2.6 2,621,428 + +2.5 2,621,428 + +4.1 2,621,428 + +2.3 2,621,428 + +0.1 2,621,429 - +2.3 2,621,429 - +0.6 2,621,429 - -0.1 2,621,429 - +0.9 2,621,429 - +0.5 2,621,429 - +0.2
Or see this region's nucleotide sequence