Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_11720

Experiment: Sisomicin 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_11710 and AO353_11715 are separated by 59 nucleotidesAO353_11715 and AO353_11720 overlap by 4 nucleotidesAO353_11720 and AO353_11725 are separated by 16 nucleotides AO353_11710: AO353_11710 - taurine dioxygenase, at 2,584,985 to 2,585,827 _11710 AO353_11715: AO353_11715 - taurine ABC transporter permease, at 2,585,887 to 2,586,726 _11715 AO353_11720: AO353_11720 - taurine transporter ATP-binding subunit, at 2,586,723 to 2,587,517 _11720 AO353_11725: AO353_11725 - taurine ABC transporter substrate-binding protein, at 2,587,534 to 2,588,511 _11725 Position (kb) 2586 2587 2588Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2585.765 kb on - strandat 2585.875 kb on + strandat 2585.876 kb on - strandat 2585.876 kb on - strandat 2586.266 kb on + strand, within AO353_11715at 2586.266 kb on + strand, within AO353_11715at 2586.266 kb on + strand, within AO353_11715at 2586.267 kb on - strand, within AO353_11715at 2586.267 kb on - strand, within AO353_11715at 2586.267 kb on - strand, within AO353_11715at 2586.326 kb on + strand, within AO353_11715at 2586.326 kb on + strand, within AO353_11715at 2586.326 kb on + strand, within AO353_11715at 2586.327 kb on - strand, within AO353_11715at 2586.469 kb on + strand, within AO353_11715at 2586.470 kb on - strand, within AO353_11715at 2586.470 kb on - strand, within AO353_11715at 2586.501 kb on + strand, within AO353_11715at 2586.503 kb on + strand, within AO353_11715at 2586.503 kb on + strand, within AO353_11715at 2586.503 kb on + strand, within AO353_11715at 2586.503 kb on + strand, within AO353_11715at 2586.503 kb on + strand, within AO353_11715at 2586.503 kb on + strand, within AO353_11715at 2586.503 kb on + strand, within AO353_11715at 2586.503 kb on + strand, within AO353_11715at 2586.503 kb on + strand, within AO353_11715at 2586.504 kb on - strand, within AO353_11715at 2586.504 kb on - strand, within AO353_11715at 2586.504 kb on - strand, within AO353_11715at 2586.504 kb on - strand, within AO353_11715at 2586.504 kb on - strand, within AO353_11715at 2586.504 kb on - strand, within AO353_11715at 2586.504 kb on - strand, within AO353_11715at 2586.504 kb on - strand, within AO353_11715at 2586.504 kb on - strand, within AO353_11715at 2586.628 kb on + strand, within AO353_11715at 2586.628 kb on + strand, within AO353_11715at 2586.629 kb on - strand, within AO353_11715at 2586.629 kb on - strand, within AO353_11715at 2586.717 kb on - strandat 2586.717 kb on - strandat 2586.717 kb on - strandat 2586.777 kb on + strandat 2586.777 kb on + strandat 2586.777 kb on + strandat 2586.778 kb on - strandat 2586.778 kb on - strandat 2586.778 kb on - strandat 2586.778 kb on - strandat 2586.928 kb on - strand, within AO353_11720at 2586.928 kb on - strand, within AO353_11720at 2587.196 kb on + strand, within AO353_11720at 2587.196 kb on + strand, within AO353_11720at 2587.196 kb on + strand, within AO353_11720at 2587.197 kb on - strand, within AO353_11720at 2587.197 kb on - strand, within AO353_11720at 2587.197 kb on - strand, within AO353_11720at 2587.206 kb on + strand, within AO353_11720at 2587.440 kb on + strandat 2587.481 kb on - strandat 2587.539 kb on + strandat 2587.539 kb on + strandat 2587.539 kb on + strandat 2587.539 kb on + strandat 2587.540 kb on - strandat 2587.540 kb on - strandat 2587.540 kb on - strandat 2587.540 kb on - strandat 2587.540 kb on - strandat 2587.547 kb on + strandat 2587.547 kb on + strandat 2587.547 kb on + strandat 2587.547 kb on + strandat 2587.547 kb on + strandat 2587.547 kb on + strandat 2587.547 kb on + strandat 2587.547 kb on + strandat 2587.547 kb on + strandat 2587.547 kb on + strandat 2587.548 kb on - strandat 2587.548 kb on - strandat 2587.548 kb on - strandat 2587.548 kb on - strandat 2587.548 kb on - strandat 2587.548 kb on - strandat 2587.548 kb on - strandat 2587.548 kb on - strandat 2587.548 kb on - strandat 2587.548 kb on - strandat 2587.562 kb on + strandat 2587.562 kb on + strandat 2587.562 kb on + strandat 2587.562 kb on + strandat 2587.563 kb on - strandat 2587.563 kb on - strandat 2587.563 kb on - strandat 2587.563 kb on - strandat 2587.563 kb on - strandat 2587.571 kb on + strandat 2587.571 kb on + strandat 2587.571 kb on + strandat 2587.571 kb on + strandat 2587.571 kb on + strandat 2587.572 kb on - strandat 2587.685 kb on + strand, within AO353_11725at 2587.979 kb on + strand, within AO353_11725at 2587.979 kb on + strand, within AO353_11725at 2587.979 kb on + strand, within AO353_11725at 2587.979 kb on + strand, within AO353_11725at 2587.979 kb on + strand, within AO353_11725at 2587.979 kb on + strand, within AO353_11725at 2587.979 kb on + strand, within AO353_11725at 2587.979 kb on + strand, within AO353_11725at 2587.979 kb on + strand, within AO353_11725at 2587.979 kb on + strand, within AO353_11725at 2587.979 kb on + strand, within AO353_11725at 2587.979 kb on + strand, within AO353_11725at 2587.979 kb on - strand, within AO353_11725at 2587.980 kb on - strand, within AO353_11725at 2587.980 kb on - strand, within AO353_11725at 2587.980 kb on - strand, within AO353_11725at 2587.980 kb on - strand, within AO353_11725at 2587.980 kb on - strand, within AO353_11725at 2587.980 kb on - strand, within AO353_11725at 2587.980 kb on - strand, within AO353_11725at 2588.096 kb on + strand, within AO353_11725at 2588.096 kb on + strand, within AO353_11725at 2588.096 kb on + strand, within AO353_11725at 2588.097 kb on - strand, within AO353_11725at 2588.097 kb on - strand, within AO353_11725at 2588.097 kb on - strand, within AO353_11725at 2588.276 kb on + strand, within AO353_11725at 2588.420 kb on + strandat 2588.420 kb on + strandat 2588.421 kb on - strandat 2588.492 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
remove
2,585,765 - -1.8
2,585,875 + +1.6
2,585,876 - +0.4
2,585,876 - +1.3
2,586,266 + AO353_11715 0.45 +0.1
2,586,266 + AO353_11715 0.45 +0.3
2,586,266 + AO353_11715 0.45 +0.7
2,586,267 - AO353_11715 0.45 -0.8
2,586,267 - AO353_11715 0.45 -0.5
2,586,267 - AO353_11715 0.45 +1.9
2,586,326 + AO353_11715 0.52 +0.9
2,586,326 + AO353_11715 0.52 +0.7
2,586,326 + AO353_11715 0.52 -1.3
2,586,327 - AO353_11715 0.52 +0.1
2,586,469 + AO353_11715 0.69 -1.5
2,586,470 - AO353_11715 0.69 +0.1
2,586,470 - AO353_11715 0.69 -1.9
2,586,501 + AO353_11715 0.73 +0.3
2,586,503 + AO353_11715 0.73 +0.7
2,586,503 + AO353_11715 0.73 -1.0
2,586,503 + AO353_11715 0.73 +0.3
2,586,503 + AO353_11715 0.73 +1.3
2,586,503 + AO353_11715 0.73 +0.5
2,586,503 + AO353_11715 0.73 +0.4
2,586,503 + AO353_11715 0.73 -0.8
2,586,503 + AO353_11715 0.73 -1.2
2,586,503 + AO353_11715 0.73 -0.6
2,586,504 - AO353_11715 0.73 +0.6
2,586,504 - AO353_11715 0.73 +1.3
2,586,504 - AO353_11715 0.73 -0.1
2,586,504 - AO353_11715 0.73 -2.0
2,586,504 - AO353_11715 0.73 +0.6
2,586,504 - AO353_11715 0.73 -0.1
2,586,504 - AO353_11715 0.73 -0.6
2,586,504 - AO353_11715 0.73 -1.4
2,586,504 - AO353_11715 0.73 -0.1
2,586,628 + AO353_11715 0.88 -0.4
2,586,628 + AO353_11715 0.88 -0.1
2,586,629 - AO353_11715 0.88 +1.5
2,586,629 - AO353_11715 0.88 +0.3
2,586,717 - -0.8
2,586,717 - +0.8
2,586,717 - -0.0
2,586,777 + +0.6
2,586,777 + -0.5
2,586,777 + -0.1
2,586,778 - +3.2
2,586,778 - -1.5
2,586,778 - +0.5
2,586,778 - -0.4
2,586,928 - AO353_11720 0.26 -0.9
2,586,928 - AO353_11720 0.26 -0.9
2,587,196 + AO353_11720 0.59 -0.2
2,587,196 + AO353_11720 0.59 -0.6
2,587,196 + AO353_11720 0.59 -2.0
2,587,197 - AO353_11720 0.60 -0.5
2,587,197 - AO353_11720 0.60 -0.5
2,587,197 - AO353_11720 0.60 +0.8
2,587,206 + AO353_11720 0.61 +0.4
2,587,440 + +0.9
2,587,481 - -0.7
2,587,539 + -0.1
2,587,539 + -1.6
2,587,539 + +0.5
2,587,539 + +0.1
2,587,540 - -0.6
2,587,540 - +0.1
2,587,540 - +0.6
2,587,540 - +1.6
2,587,540 - -0.6
2,587,547 + +0.2
2,587,547 + -0.9
2,587,547 + -1.0
2,587,547 + +0.9
2,587,547 + +0.1
2,587,547 + +1.3
2,587,547 + +0.1
2,587,547 + +0.2
2,587,547 + +0.9
2,587,547 + +1.3
2,587,548 - -0.5
2,587,548 - -0.2
2,587,548 - -1.8
2,587,548 - -0.0
2,587,548 - -0.5
2,587,548 - -0.6
2,587,548 - +0.3
2,587,548 - -0.2
2,587,548 - -0.2
2,587,548 - +0.5
2,587,562 + -0.2
2,587,562 + -0.1
2,587,562 + -0.5
2,587,562 + +0.2
2,587,563 - +0.5
2,587,563 - +0.2
2,587,563 - -1.6
2,587,563 - +1.3
2,587,563 - -0.8
2,587,571 + +1.5
2,587,571 + -0.5
2,587,571 + -0.0
2,587,571 + +0.6
2,587,571 + +0.6
2,587,572 - -0.7
2,587,685 + AO353_11725 0.15 +1.1
2,587,979 + AO353_11725 0.46 +1.9
2,587,979 + AO353_11725 0.46 -0.1
2,587,979 + AO353_11725 0.46 -0.4
2,587,979 + AO353_11725 0.46 +1.3
2,587,979 + AO353_11725 0.46 +0.2
2,587,979 + AO353_11725 0.46 +0.8
2,587,979 + AO353_11725 0.46 -0.0
2,587,979 + AO353_11725 0.46 -1.4
2,587,979 + AO353_11725 0.46 +1.5
2,587,979 + AO353_11725 0.46 -0.4
2,587,979 + AO353_11725 0.46 -0.5
2,587,979 + AO353_11725 0.46 +0.8
2,587,979 - AO353_11725 0.46 -1.1
2,587,980 - AO353_11725 0.46 -1.4
2,587,980 - AO353_11725 0.46 -0.7
2,587,980 - AO353_11725 0.46 +0.5
2,587,980 - AO353_11725 0.46 +0.6
2,587,980 - AO353_11725 0.46 -0.7
2,587,980 - AO353_11725 0.46 +0.1
2,587,980 - AO353_11725 0.46 +0.4
2,588,096 + AO353_11725 0.57 -0.5
2,588,096 + AO353_11725 0.57 +0.6
2,588,096 + AO353_11725 0.57 -1.4
2,588,097 - AO353_11725 0.58 +0.2
2,588,097 - AO353_11725 0.58 -1.2
2,588,097 - AO353_11725 0.58 -0.2
2,588,276 + AO353_11725 0.76 +0.0
2,588,420 + -0.1
2,588,420 + -1.0
2,588,421 - -0.2
2,588,492 - +2.3

Or see this region's nucleotide sequence