Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_11175

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_11170 and AO353_11175 are separated by 128 nucleotidesAO353_11175 and AO353_11180 are separated by 149 nucleotides AO353_11170: AO353_11170 - hypothetical protein, at 2,444,592 to 2,446,538 _11170 AO353_11175: AO353_11175 - tryptophan synthase subunit beta, at 2,446,667 to 2,447,005 _11175 AO353_11180: AO353_11180 - large adhesive protein, at 2,447,155 to 2,462,784 _11180 Position (kb) 2446 2447 2448Strain fitness (log2 ratio) -2 -1 0 1 2at 2445.833 kb on + strand, within AO353_11170at 2445.833 kb on + strand, within AO353_11170at 2445.833 kb on + strand, within AO353_11170at 2445.833 kb on + strand, within AO353_11170at 2445.834 kb on - strand, within AO353_11170at 2445.834 kb on - strand, within AO353_11170at 2445.834 kb on - strand, within AO353_11170at 2445.834 kb on - strand, within AO353_11170at 2445.834 kb on - strand, within AO353_11170at 2445.834 kb on - strand, within AO353_11170at 2445.834 kb on - strand, within AO353_11170at 2445.876 kb on + strand, within AO353_11170at 2445.876 kb on + strand, within AO353_11170at 2445.876 kb on + strand, within AO353_11170at 2445.876 kb on + strand, within AO353_11170at 2445.876 kb on + strand, within AO353_11170at 2445.876 kb on + strand, within AO353_11170at 2445.877 kb on - strand, within AO353_11170at 2445.877 kb on - strand, within AO353_11170at 2445.877 kb on - strand, within AO353_11170at 2445.877 kb on - strand, within AO353_11170at 2445.877 kb on - strand, within AO353_11170at 2445.924 kb on + strand, within AO353_11170at 2445.924 kb on + strand, within AO353_11170at 2445.924 kb on + strand, within AO353_11170at 2445.924 kb on + strand, within AO353_11170at 2445.925 kb on - strand, within AO353_11170at 2445.925 kb on - strand, within AO353_11170at 2445.925 kb on - strand, within AO353_11170at 2445.925 kb on - strand, within AO353_11170at 2445.925 kb on - strand, within AO353_11170at 2445.925 kb on - strand, within AO353_11170at 2446.127 kb on + strand, within AO353_11170at 2446.127 kb on + strand, within AO353_11170at 2446.128 kb on - strand, within AO353_11170at 2446.128 kb on - strand, within AO353_11170at 2446.201 kb on + strand, within AO353_11170at 2446.201 kb on + strand, within AO353_11170at 2446.202 kb on - strand, within AO353_11170at 2446.202 kb on - strand, within AO353_11170at 2446.202 kb on - strand, within AO353_11170at 2446.202 kb on - strand, within AO353_11170at 2446.202 kb on - strand, within AO353_11170at 2446.326 kb on + strand, within AO353_11170at 2446.327 kb on - strand, within AO353_11170at 2446.347 kb on + strandat 2446.347 kb on + strandat 2446.347 kb on + strandat 2446.347 kb on + strandat 2446.347 kb on + strandat 2446.347 kb on + strandat 2446.347 kb on + strandat 2446.347 kb on + strandat 2446.347 kb on + strandat 2446.348 kb on - strandat 2446.348 kb on - strandat 2446.491 kb on + strandat 2446.491 kb on + strandat 2446.492 kb on - strandat 2446.537 kb on - strandat 2446.669 kb on - strandat 2446.998 kb on + strandat 2446.998 kb on + strandat 2446.998 kb on + strandat 2446.998 kb on + strandat 2446.998 kb on + strandat 2446.998 kb on + strandat 2446.998 kb on + strandat 2446.998 kb on + strandat 2446.998 kb on + strandat 2446.998 kb on + strandat 2446.999 kb on - strandat 2446.999 kb on - strandat 2446.999 kb on - strandat 2446.999 kb on - strandat 2446.999 kb on - strandat 2446.999 kb on - strandat 2446.999 kb on - strandat 2446.999 kb on - strandat 2447.050 kb on + strandat 2447.062 kb on + strandat 2447.063 kb on - strandat 2447.063 kb on - strandat 2447.068 kb on + strandat 2447.069 kb on - strandat 2447.132 kb on - strandat 2447.132 kb on - strandat 2447.132 kb on - strandat 2447.132 kb on - strandat 2447.232 kb on + strandat 2447.232 kb on + strandat 2447.232 kb on + strandat 2447.233 kb on - strandat 2447.233 kb on - strandat 2447.233 kb on - strandat 2447.472 kb on + strandat 2447.473 kb on - strandat 2447.640 kb on + strandat 2447.675 kb on + strandat 2447.675 kb on + strandat 2447.676 kb on - strandat 2447.676 kb on - strandat 2447.690 kb on + strandat 2447.690 kb on + strandat 2447.690 kb on + strandat 2447.690 kb on + strandat 2447.690 kb on + strandat 2447.690 kb on + strandat 2447.690 kb on + strandat 2447.690 kb on + strandat 2447.690 kb on + strandat 2447.690 kb on + strandat 2447.690 kb on + strandat 2447.691 kb on - strandat 2447.691 kb on - strandat 2447.691 kb on - strandat 2447.691 kb on - strandat 2447.691 kb on - strandat 2447.691 kb on - strandat 2447.691 kb on - strandat 2447.691 kb on - strandat 2447.691 kb on - strandat 2447.691 kb on - strandat 2447.691 kb on - strandat 2447.691 kb on - strandat 2447.768 kb on + strandat 2447.769 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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2,445,833 + AO353_11170 0.64 -1.0
2,445,833 + AO353_11170 0.64 -0.7
2,445,833 + AO353_11170 0.64 -1.4
2,445,833 + AO353_11170 0.64 -0.2
2,445,834 - AO353_11170 0.64 -0.5
2,445,834 - AO353_11170 0.64 -0.6
2,445,834 - AO353_11170 0.64 +0.3
2,445,834 - AO353_11170 0.64 -0.4
2,445,834 - AO353_11170 0.64 -0.1
2,445,834 - AO353_11170 0.64 -1.1
2,445,834 - AO353_11170 0.64 +0.5
2,445,876 + AO353_11170 0.66 -1.8
2,445,876 + AO353_11170 0.66 -1.0
2,445,876 + AO353_11170 0.66 +0.4
2,445,876 + AO353_11170 0.66 +0.7
2,445,876 + AO353_11170 0.66 +0.2
2,445,876 + AO353_11170 0.66 +0.1
2,445,877 - AO353_11170 0.66 -0.7
2,445,877 - AO353_11170 0.66 +2.1
2,445,877 - AO353_11170 0.66 +1.7
2,445,877 - AO353_11170 0.66 +0.2
2,445,877 - AO353_11170 0.66 -0.2
2,445,924 + AO353_11170 0.68 -0.1
2,445,924 + AO353_11170 0.68 +0.9
2,445,924 + AO353_11170 0.68 +0.9
2,445,924 + AO353_11170 0.68 -0.2
2,445,925 - AO353_11170 0.68 +0.3
2,445,925 - AO353_11170 0.68 +0.4
2,445,925 - AO353_11170 0.68 -0.1
2,445,925 - AO353_11170 0.68 -1.7
2,445,925 - AO353_11170 0.68 +0.1
2,445,925 - AO353_11170 0.68 +0.9
2,446,127 + AO353_11170 0.79 +0.1
2,446,127 + AO353_11170 0.79 -0.5
2,446,128 - AO353_11170 0.79 +0.1
2,446,128 - AO353_11170 0.79 -2.2
2,446,201 + AO353_11170 0.83 -1.7
2,446,201 + AO353_11170 0.83 +1.1
2,446,202 - AO353_11170 0.83 +1.1
2,446,202 - AO353_11170 0.83 -0.8
2,446,202 - AO353_11170 0.83 +1.2
2,446,202 - AO353_11170 0.83 +1.5
2,446,202 - AO353_11170 0.83 +0.9
2,446,326 + AO353_11170 0.89 +0.3
2,446,327 - AO353_11170 0.89 +0.1
2,446,347 + +1.5
2,446,347 + -1.4
2,446,347 + -0.4
2,446,347 + -1.1
2,446,347 + +1.0
2,446,347 + -1.3
2,446,347 + +0.6
2,446,347 + -2.3
2,446,347 + -0.9
2,446,348 - -2.1
2,446,348 - -1.0
2,446,491 + -0.8
2,446,491 + -0.2
2,446,492 - +1.7
2,446,537 - -1.0
2,446,669 - +0.3
2,446,998 + -0.1
2,446,998 + -1.5
2,446,998 + -0.1
2,446,998 + -0.8
2,446,998 + -1.6
2,446,998 + +1.4
2,446,998 + -0.6
2,446,998 + +1.2
2,446,998 + -1.1
2,446,998 + -0.1
2,446,999 - -1.0
2,446,999 - +0.1
2,446,999 - -0.9
2,446,999 - -0.9
2,446,999 - -0.2
2,446,999 - +0.5
2,446,999 - -0.5
2,446,999 - +0.7
2,447,050 + -1.6
2,447,062 + -0.8
2,447,063 - +0.9
2,447,063 - -1.1
2,447,068 + +1.6
2,447,069 - -2.2
2,447,132 - -0.6
2,447,132 - +1.0
2,447,132 - +0.1
2,447,132 - +0.8
2,447,232 + -1.0
2,447,232 + +1.0
2,447,232 + +2.1
2,447,233 - -2.2
2,447,233 - -0.2
2,447,233 - -0.5
2,447,472 + +0.5
2,447,473 - +1.1
2,447,640 + -1.2
2,447,675 + -1.0
2,447,675 + -0.2
2,447,676 - -1.3
2,447,676 - -2.3
2,447,690 + -0.1
2,447,690 + +0.2
2,447,690 + -0.7
2,447,690 + -0.5
2,447,690 + +0.2
2,447,690 + -0.8
2,447,690 + -0.2
2,447,690 + -0.7
2,447,690 + +0.5
2,447,690 + -1.7
2,447,690 + +1.2
2,447,691 - +0.5
2,447,691 - +1.7
2,447,691 - +1.2
2,447,691 - -0.7
2,447,691 - -1.6
2,447,691 - +0.2
2,447,691 - -0.5
2,447,691 - -1.0
2,447,691 - +0.3
2,447,691 - +0.3
2,447,691 - +0.1
2,447,691 - -0.8
2,447,768 + +0.2
2,447,769 - +0.8

Or see this region's nucleotide sequence