Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_06640 and AO353_06645 are separated by 342 nucleotides AO353_06645 and AO353_06650 overlap by 4 nucleotides AO353_06650 and AO353_06655 are separated by 110 nucleotides
AO353_06640: AO353_06640 - hypothetical protein, at 1,481,006 to 1,481,797
_06640
AO353_06645: AO353_06645 - exodeoxyribonuclease VII small subunit, at 1,482,140 to 1,482,382
_06645
AO353_06650: AO353_06650 - geranyl transferase, at 1,482,379 to 1,483,266
_06650
AO353_06655: AO353_06655 - 1-deoxy-D-xylulose-5-phosphate synthase, at 1,483,377 to 1,485,275
_06655
Position (kb)
1482
1483
1484 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7 at 1481.421 kb on + strand, within AO353_06640 at 1481.421 kb on + strand, within AO353_06640 at 1481.421 kb on + strand, within AO353_06640 at 1481.421 kb on + strand, within AO353_06640 at 1481.421 kb on + strand, within AO353_06640 at 1481.421 kb on + strand, within AO353_06640 at 1481.421 kb on + strand, within AO353_06640 at 1481.421 kb on + strand, within AO353_06640 at 1481.422 kb on - strand, within AO353_06640 at 1481.422 kb on - strand, within AO353_06640 at 1481.458 kb on + strand, within AO353_06640 at 1481.458 kb on + strand, within AO353_06640 at 1481.458 kb on + strand, within AO353_06640 at 1481.458 kb on + strand, within AO353_06640 at 1481.459 kb on - strand, within AO353_06640 at 1481.459 kb on - strand, within AO353_06640 at 1481.459 kb on - strand, within AO353_06640 at 1481.459 kb on - strand, within AO353_06640 at 1481.496 kb on + strand, within AO353_06640 at 1481.496 kb on + strand, within AO353_06640 at 1481.496 kb on + strand, within AO353_06640 at 1481.496 kb on + strand, within AO353_06640 at 1481.496 kb on + strand, within AO353_06640 at 1481.496 kb on + strand, within AO353_06640 at 1481.496 kb on + strand, within AO353_06640 at 1481.497 kb on - strand, within AO353_06640 at 1481.497 kb on - strand, within AO353_06640 at 1481.497 kb on - strand, within AO353_06640 at 1481.497 kb on - strand, within AO353_06640 at 1481.497 kb on - strand, within AO353_06640 at 1481.529 kb on + strand, within AO353_06640 at 1481.529 kb on + strand, within AO353_06640 at 1481.530 kb on - strand, within AO353_06640 at 1481.696 kb on - strand, within AO353_06640 at 1481.698 kb on - strand, within AO353_06640 at 1481.698 kb on - strand, within AO353_06640 at 1481.901 kb on + strand at 1481.901 kb on + strand at 1481.901 kb on + strand at 1481.902 kb on - strand at 1481.902 kb on - strand at 1481.947 kb on + strand at 1481.947 kb on + strand at 1481.948 kb on - strand at 1481.948 kb on - strand at 1481.953 kb on + strand at 1481.953 kb on + strand at 1482.042 kb on + strand at 1482.042 kb on + strand at 1482.042 kb on + strand at 1482.043 kb on - strand at 1482.094 kb on - strand at 1482.100 kb on + strand at 1482.100 kb on + strand at 1482.100 kb on + strand at 1482.100 kb on + strand at 1482.100 kb on + strand at 1482.100 kb on + strand at 1483.288 kb on + strand at 1483.288 kb on + strand at 1483.288 kb on + strand at 1483.288 kb on + strand at 1483.289 kb on - strand at 1483.289 kb on - strand at 1483.355 kb on + strand at 1483.355 kb on + strand at 1483.355 kb on + strand at 1483.355 kb on + strand at 1483.357 kb on + strand at 1483.357 kb on + strand at 1483.357 kb on + strand at 1483.357 kb on + strand at 1483.357 kb on + strand at 1483.357 kb on + strand at 1483.357 kb on + strand at 1483.357 kb on + strand at 1483.361 kb on + strand at 1483.361 kb on + strand at 1483.361 kb on + strand at 1483.361 kb on + strand at 1483.361 kb on + strand at 1483.361 kb on + strand at 1483.361 kb on + strand at 1483.361 kb on + strand at 1483.361 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 1,481,421 + AO353_06640 0.52 -0.2 1,481,421 + AO353_06640 0.52 +0.1 1,481,421 + AO353_06640 0.52 -0.4 1,481,421 + AO353_06640 0.52 -1.3 1,481,421 + AO353_06640 0.52 +0.1 1,481,421 + AO353_06640 0.52 -0.5 1,481,421 + AO353_06640 0.52 +1.1 1,481,421 + AO353_06640 0.52 -0.6 1,481,422 - AO353_06640 0.53 +1.1 1,481,422 - AO353_06640 0.53 -2.5 1,481,458 + AO353_06640 0.57 -0.1 1,481,458 + AO353_06640 0.57 -0.4 1,481,458 + AO353_06640 0.57 -1.1 1,481,458 + AO353_06640 0.57 -0.3 1,481,459 - AO353_06640 0.57 -0.1 1,481,459 - AO353_06640 0.57 -0.3 1,481,459 - AO353_06640 0.57 -0.2 1,481,459 - AO353_06640 0.57 +0.9 1,481,496 + AO353_06640 0.62 -0.2 1,481,496 + AO353_06640 0.62 -0.9 1,481,496 + AO353_06640 0.62 -0.4 1,481,496 + AO353_06640 0.62 +0.1 1,481,496 + AO353_06640 0.62 +1.6 1,481,496 + AO353_06640 0.62 +0.7 1,481,496 + AO353_06640 0.62 +1.0 1,481,497 - AO353_06640 0.62 -1.7 1,481,497 - AO353_06640 0.62 -1.7 1,481,497 - AO353_06640 0.62 +1.1 1,481,497 - AO353_06640 0.62 +1.6 1,481,497 - AO353_06640 0.62 -1.0 1,481,529 + AO353_06640 0.66 +1.1 1,481,529 + AO353_06640 0.66 +0.7 1,481,530 - AO353_06640 0.66 +1.3 1,481,696 - AO353_06640 0.87 -1.2 1,481,698 - AO353_06640 0.87 +0.4 1,481,698 - AO353_06640 0.87 -0.1 1,481,901 + -0.4 1,481,901 + +0.6 1,481,901 + -0.4 1,481,902 - -1.7 1,481,902 - -0.7 1,481,947 + -0.8 1,481,947 + +0.3 1,481,948 - -1.1 1,481,948 - -0.1 1,481,953 + +0.2 1,481,953 + -0.2 1,482,042 + -0.4 1,482,042 + -0.6 1,482,042 + -0.7 1,482,043 - -0.7 1,482,094 - -0.4 1,482,100 + +2.4 1,482,100 + +2.9 1,482,100 + +1.7 1,482,100 + +1.8 1,482,100 + -0.6 1,482,100 + +1.0 1,483,288 + -0.1 1,483,288 + +0.7 1,483,288 + -0.7 1,483,288 + +0.1 1,483,289 - +4.1 1,483,289 - +4.7 1,483,355 + +0.7 1,483,355 + +1.3 1,483,355 + +7.1 1,483,355 + +1.1 1,483,357 + +2.0 1,483,357 + -0.6 1,483,357 + +2.1 1,483,357 + +0.1 1,483,357 + +0.0 1,483,357 + -0.6 1,483,357 + +2.6 1,483,357 + +1.9 1,483,361 + +0.1 1,483,361 + +0.3 1,483,361 + +1.8 1,483,361 + +0.7 1,483,361 + +0.1 1,483,361 + -0.7 1,483,361 + +0.2 1,483,361 + -0.6 1,483,361 + +4.7
Or see this region's nucleotide sequence