Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05680

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_05665 and AO353_05670 are separated by 97 nucleotidesAO353_05670 and AO353_05675 are separated by 60 nucleotidesAO353_05675 and AO353_05680 overlap by 8 nucleotidesAO353_05680 and AO353_05685 are separated by 7 nucleotides AO353_05665: AO353_05665 - Fur family transcriptional regulator, at 1,253,368 to 1,253,772 _05665 AO353_05670: AO353_05670 - hypothetical protein, at 1,253,870 to 1,254,397 _05670 AO353_05675: AO353_05675 - protein RnfH, at 1,254,458 to 1,254,775 _05675 AO353_05680: AO353_05680 - ribosome association toxin RatA, at 1,254,768 to 1,255,202 _05680 AO353_05685: AO353_05685 - symporter, at 1,255,210 to 1,256,613 _05685 Position (kb) 1254 1255 1256Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 1254.395 kb on + strandat 1254.396 kb on - strandat 1254.396 kb on - strandat 1254.460 kb on - strandat 1254.503 kb on + strand, within AO353_05675at 1254.503 kb on + strand, within AO353_05675at 1254.504 kb on - strand, within AO353_05675at 1254.544 kb on - strand, within AO353_05675at 1254.544 kb on - strand, within AO353_05675at 1254.688 kb on + strand, within AO353_05675at 1254.688 kb on + strand, within AO353_05675at 1254.689 kb on - strand, within AO353_05675at 1254.689 kb on - strand, within AO353_05675at 1254.689 kb on - strand, within AO353_05675at 1254.689 kb on - strand, within AO353_05675at 1254.689 kb on - strand, within AO353_05675at 1254.695 kb on + strand, within AO353_05675at 1254.695 kb on + strandat 1254.696 kb on - strand, within AO353_05675at 1254.741 kb on + strand, within AO353_05675at 1254.741 kb on + strand, within AO353_05675at 1254.741 kb on + strand, within AO353_05675at 1254.741 kb on + strand, within AO353_05675at 1254.741 kb on + strand, within AO353_05675at 1254.742 kb on - strand, within AO353_05675at 1254.742 kb on - strand, within AO353_05675at 1254.742 kb on - strand, within AO353_05675at 1254.742 kb on - strand, within AO353_05675at 1254.742 kb on - strand, within AO353_05675at 1254.742 kb on - strand, within AO353_05675at 1254.742 kb on - strand, within AO353_05675at 1254.742 kb on - strand, within AO353_05675at 1254.742 kb on - strand, within AO353_05675at 1254.769 kb on + strandat 1255.238 kb on - strandat 1255.238 kb on - strandat 1255.238 kb on - strandat 1255.238 kb on - strandat 1255.238 kb on - strandat 1255.263 kb on - strandat 1255.263 kb on - strandat 1255.263 kb on - strandat 1255.263 kb on - strandat 1255.263 kb on - strandat 1255.263 kb on - strandat 1255.263 kb on - strandat 1255.263 kb on - strandat 1255.455 kb on - strand, within AO353_05685at 1255.506 kb on + strand, within AO353_05685at 1255.506 kb on + strand, within AO353_05685at 1255.507 kb on - strand, within AO353_05685at 1255.507 kb on - strand, within AO353_05685at 1255.507 kb on - strand, within AO353_05685at 1255.507 kb on - strand, within AO353_05685at 1255.604 kb on + strand, within AO353_05685at 1255.605 kb on - strand, within AO353_05685at 1255.605 kb on - strand, within AO353_05685at 1255.705 kb on - strand, within AO353_05685at 1255.819 kb on - strand, within AO353_05685at 1255.819 kb on - strand, within AO353_05685at 1255.819 kb on - strand, within AO353_05685at 1255.867 kb on - strand, within AO353_05685at 1255.867 kb on - strand, within AO353_05685at 1255.867 kb on - strand, within AO353_05685at 1255.872 kb on + strand, within AO353_05685at 1255.872 kb on + strand, within AO353_05685at 1255.872 kb on + strand, within AO353_05685at 1255.872 kb on + strand, within AO353_05685at 1255.872 kb on + strand, within AO353_05685at 1255.872 kb on + strand, within AO353_05685at 1255.872 kb on + strand, within AO353_05685at 1255.872 kb on + strand, within AO353_05685at 1255.872 kb on + strand, within AO353_05685at 1255.872 kb on + strand, within AO353_05685at 1255.872 kb on + strand, within AO353_05685at 1255.873 kb on - strand, within AO353_05685at 1255.873 kb on - strand, within AO353_05685at 1255.873 kb on - strand, within AO353_05685at 1255.873 kb on - strand, within AO353_05685at 1255.873 kb on - strand, within AO353_05685at 1255.873 kb on - strand, within AO353_05685at 1255.873 kb on - strand, within AO353_05685at 1255.873 kb on - strand, within AO353_05685at 1255.873 kb on - strand, within AO353_05685at 1255.873 kb on - strand, within AO353_05685at 1255.873 kb on - strand, within AO353_05685at 1255.873 kb on - strand, within AO353_05685at 1255.873 kb on - strand, within AO353_05685at 1255.873 kb on - strand, within AO353_05685at 1255.873 kb on - strand, within AO353_05685at 1255.873 kb on - strand, within AO353_05685at 1255.873 kb on - strand, within AO353_05685at 1255.873 kb on - strand, within AO353_05685at 1255.873 kb on - strand, within AO353_05685at 1255.873 kb on - strand, within AO353_05685at 1255.873 kb on - strand, within AO353_05685at 1255.873 kb on - strand, within AO353_05685at 1255.873 kb on - strand, within AO353_05685at 1255.873 kb on - strand, within AO353_05685at 1255.874 kb on + strand, within AO353_05685at 1255.874 kb on + strand, within AO353_05685at 1255.874 kb on + strand, within AO353_05685at 1255.874 kb on + strand, within AO353_05685at 1255.874 kb on + strand, within AO353_05685at 1255.874 kb on + strand, within AO353_05685at 1255.874 kb on + strand, within AO353_05685at 1255.874 kb on + strand, within AO353_05685at 1255.874 kb on + strand, within AO353_05685at 1255.874 kb on + strand, within AO353_05685at 1255.874 kb on + strand, within AO353_05685at 1255.874 kb on + strand, within AO353_05685at 1255.874 kb on + strand, within AO353_05685at 1255.874 kb on + strand, within AO353_05685at 1255.874 kb on + strand, within AO353_05685at 1255.874 kb on + strand, within AO353_05685at 1255.874 kb on + strand, within AO353_05685at 1255.874 kb on + strand, within AO353_05685at 1255.874 kb on + strand, within AO353_05685at 1255.874 kb on + strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.875 kb on - strand, within AO353_05685at 1255.883 kb on + strand, within AO353_05685at 1255.883 kb on + strand, within AO353_05685at 1255.883 kb on + strand, within AO353_05685at 1255.883 kb on + strand, within AO353_05685at 1255.883 kb on + strand, within AO353_05685at 1255.883 kb on + strand, within AO353_05685at 1255.883 kb on + strand, within AO353_05685at 1255.883 kb on + strand, within AO353_05685at 1255.884 kb on - strand, within AO353_05685at 1255.884 kb on - strand, within AO353_05685at 1255.884 kb on - strand, within AO353_05685at 1255.884 kb on - strand, within AO353_05685at 1255.884 kb on - strand, within AO353_05685at 1255.884 kb on - strand, within AO353_05685at 1255.884 kb on - strand, within AO353_05685at 1255.884 kb on - strand, within AO353_05685at 1255.884 kb on - strand, within AO353_05685at 1255.884 kb on - strand, within AO353_05685at 1256.142 kb on + strand, within AO353_05685at 1256.142 kb on + strand, within AO353_05685at 1256.143 kb on - strand, within AO353_05685at 1256.190 kb on - strand, within AO353_05685

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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1,254,395 + +1.9
1,254,396 - -0.8
1,254,396 - +0.3
1,254,460 - -0.6
1,254,503 + AO353_05675 0.14 +1.0
1,254,503 + AO353_05675 0.14 -1.3
1,254,504 - AO353_05675 0.14 +0.4
1,254,544 - AO353_05675 0.27 +0.0
1,254,544 - AO353_05675 0.27 +1.4
1,254,688 + AO353_05675 0.72 +0.4
1,254,688 + AO353_05675 0.72 +0.9
1,254,689 - AO353_05675 0.73 +0.2
1,254,689 - AO353_05675 0.73 +1.3
1,254,689 - AO353_05675 0.73 -2.1
1,254,689 - AO353_05675 0.73 +2.5
1,254,689 - AO353_05675 0.73 +0.1
1,254,695 + AO353_05675 0.75 +0.0
1,254,695 + +0.6
1,254,696 - AO353_05675 0.75 +0.7
1,254,741 + AO353_05675 0.89 +2.1
1,254,741 + AO353_05675 0.89 +2.3
1,254,741 + AO353_05675 0.89 -0.3
1,254,741 + AO353_05675 0.89 +2.0
1,254,741 + AO353_05675 0.89 +0.8
1,254,742 - AO353_05675 0.89 +1.6
1,254,742 - AO353_05675 0.89 +0.4
1,254,742 - AO353_05675 0.89 -0.5
1,254,742 - AO353_05675 0.89 -0.2
1,254,742 - AO353_05675 0.89 -0.2
1,254,742 - AO353_05675 0.89 +0.8
1,254,742 - AO353_05675 0.89 +1.0
1,254,742 - AO353_05675 0.89 +0.8
1,254,742 - AO353_05675 0.89 -0.5
1,254,769 + +1.4
1,255,238 - -1.2
1,255,238 - -0.5
1,255,238 - -0.2
1,255,238 - -1.7
1,255,238 - +0.9
1,255,263 - -0.6
1,255,263 - -1.5
1,255,263 - -1.2
1,255,263 - +0.3
1,255,263 - -0.9
1,255,263 - -1.7
1,255,263 - -2.4
1,255,263 - -0.6
1,255,455 - AO353_05685 0.17 -0.4
1,255,506 + AO353_05685 0.21 +2.4
1,255,506 + AO353_05685 0.21 +6.6
1,255,507 - AO353_05685 0.21 -0.0
1,255,507 - AO353_05685 0.21 -1.2
1,255,507 - AO353_05685 0.21 -2.0
1,255,507 - AO353_05685 0.21 -1.6
1,255,604 + AO353_05685 0.28 +4.9
1,255,605 - AO353_05685 0.28 -1.3
1,255,605 - AO353_05685 0.28 -0.9
1,255,705 - AO353_05685 0.35 +1.1
1,255,819 - AO353_05685 0.43 +1.5
1,255,819 - AO353_05685 0.43 +0.1
1,255,819 - AO353_05685 0.43 -1.2
1,255,867 - AO353_05685 0.47 +0.5
1,255,867 - AO353_05685 0.47 -1.7
1,255,867 - AO353_05685 0.47 -0.9
1,255,872 + AO353_05685 0.47 +5.0
1,255,872 + AO353_05685 0.47 +4.9
1,255,872 + AO353_05685 0.47 +2.9
1,255,872 + AO353_05685 0.47 +3.0
1,255,872 + AO353_05685 0.47 +3.5
1,255,872 + AO353_05685 0.47 +3.3
1,255,872 + AO353_05685 0.47 +4.7
1,255,872 + AO353_05685 0.47 +3.6
1,255,872 + AO353_05685 0.47 +1.9
1,255,872 + AO353_05685 0.47 +3.6
1,255,872 + AO353_05685 0.47 +3.5
1,255,873 - AO353_05685 0.47 -0.4
1,255,873 - AO353_05685 0.47 +0.0
1,255,873 - AO353_05685 0.47 -1.6
1,255,873 - AO353_05685 0.47 -0.7
1,255,873 - AO353_05685 0.47 -1.5
1,255,873 - AO353_05685 0.47 +0.3
1,255,873 - AO353_05685 0.47 -2.0
1,255,873 - AO353_05685 0.47 +0.6
1,255,873 - AO353_05685 0.47 -1.9
1,255,873 - AO353_05685 0.47 -1.0
1,255,873 - AO353_05685 0.47 -1.3
1,255,873 - AO353_05685 0.47 -1.0
1,255,873 - AO353_05685 0.47 -1.2
1,255,873 - AO353_05685 0.47 -1.3
1,255,873 - AO353_05685 0.47 -0.7
1,255,873 - AO353_05685 0.47 -0.4
1,255,873 - AO353_05685 0.47 -0.7
1,255,873 - AO353_05685 0.47 -1.1
1,255,873 - AO353_05685 0.47 -0.6
1,255,873 - AO353_05685 0.47 -0.3
1,255,873 - AO353_05685 0.47 +0.4
1,255,873 - AO353_05685 0.47 -0.7
1,255,873 - AO353_05685 0.47 -0.9
1,255,873 - AO353_05685 0.47 +0.3
1,255,874 + AO353_05685 0.47 +4.6
1,255,874 + AO353_05685 0.47 +4.2
1,255,874 + AO353_05685 0.47 +4.0
1,255,874 + AO353_05685 0.47 +4.9
1,255,874 + AO353_05685 0.47 +5.0
1,255,874 + AO353_05685 0.47 +4.5
1,255,874 + AO353_05685 0.47 +5.4
1,255,874 + AO353_05685 0.47 +5.3
1,255,874 + AO353_05685 0.47 +5.2
1,255,874 + AO353_05685 0.47 +4.6
1,255,874 + AO353_05685 0.47 +3.9
1,255,874 + AO353_05685 0.47 +5.0
1,255,874 + AO353_05685 0.47 +3.8
1,255,874 + AO353_05685 0.47 +4.4
1,255,874 + AO353_05685 0.47 +3.7
1,255,874 + AO353_05685 0.47 +4.0
1,255,874 + AO353_05685 0.47 +6.3
1,255,874 + AO353_05685 0.47 +5.9
1,255,874 + AO353_05685 0.47 +4.2
1,255,874 + AO353_05685 0.47 -1.1
1,255,875 - AO353_05685 0.47 -0.4
1,255,875 - AO353_05685 0.47 +1.4
1,255,875 - AO353_05685 0.47 -1.6
1,255,875 - AO353_05685 0.47 -0.1
1,255,875 - AO353_05685 0.47 -0.0
1,255,875 - AO353_05685 0.47 -0.3
1,255,875 - AO353_05685 0.47 -1.7
1,255,875 - AO353_05685 0.47 +0.6
1,255,875 - AO353_05685 0.47 -0.9
1,255,875 - AO353_05685 0.47 -1.2
1,255,875 - AO353_05685 0.47 +0.6
1,255,875 - AO353_05685 0.47 +0.0
1,255,875 - AO353_05685 0.47 -1.9
1,255,875 - AO353_05685 0.47 +1.0
1,255,875 - AO353_05685 0.47 -0.4
1,255,875 - AO353_05685 0.47 -1.5
1,255,875 - AO353_05685 0.47 -0.6
1,255,875 - AO353_05685 0.47 -1.1
1,255,875 - AO353_05685 0.47 -0.6
1,255,875 - AO353_05685 0.47 +0.0
1,255,875 - AO353_05685 0.47 +0.7
1,255,875 - AO353_05685 0.47 -0.2
1,255,875 - AO353_05685 0.47 -1.4
1,255,875 - AO353_05685 0.47 +1.0
1,255,875 - AO353_05685 0.47 +0.3
1,255,875 - AO353_05685 0.47 +2.0
1,255,875 - AO353_05685 0.47 -0.9
1,255,875 - AO353_05685 0.47 +0.0
1,255,875 - AO353_05685 0.47 -0.9
1,255,875 - AO353_05685 0.47 +0.3
1,255,875 - AO353_05685 0.47 -1.3
1,255,875 - AO353_05685 0.47 -0.4
1,255,875 - AO353_05685 0.47 -0.7
1,255,875 - AO353_05685 0.47 -0.6
1,255,875 - AO353_05685 0.47 -0.6
1,255,875 - AO353_05685 0.47 +1.3
1,255,875 - AO353_05685 0.47 +0.0
1,255,875 - AO353_05685 0.47 -0.5
1,255,875 - AO353_05685 0.47 +0.0
1,255,883 + AO353_05685 0.48 +4.8
1,255,883 + AO353_05685 0.48 +3.1
1,255,883 + AO353_05685 0.48 +3.5
1,255,883 + AO353_05685 0.48 +3.2
1,255,883 + AO353_05685 0.48 +3.0
1,255,883 + AO353_05685 0.48 +3.1
1,255,883 + AO353_05685 0.48 +5.1
1,255,883 + AO353_05685 0.48 +3.7
1,255,884 - AO353_05685 0.48 -0.9
1,255,884 - AO353_05685 0.48 -1.0
1,255,884 - AO353_05685 0.48 -1.5
1,255,884 - AO353_05685 0.48 +1.9
1,255,884 - AO353_05685 0.48 +0.6
1,255,884 - AO353_05685 0.48 +0.5
1,255,884 - AO353_05685 0.48 -1.4
1,255,884 - AO353_05685 0.48 -0.2
1,255,884 - AO353_05685 0.48 -0.9
1,255,884 - AO353_05685 0.48 +1.5
1,256,142 + AO353_05685 0.66 +3.5
1,256,142 + AO353_05685 0.66 +4.8
1,256,143 - AO353_05685 0.66 -1.6
1,256,190 - AO353_05685 0.70 -1.9

Or see this region's nucleotide sequence