Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04430 and AO353_04435 are separated by 148 nucleotides AO353_04435 and AO353_04440 are separated by 39 nucleotides AO353_04440 and AO353_04445 are separated by 435 nucleotides
AO353_04430: AO353_04430 - DNA mismatch repair protein MutT, at 952,967 to 953,566
_04430
AO353_04435: AO353_04435 - ADP-ribose pyrophosphatase, at 953,715 to 954,266
_04435
AO353_04440: AO353_04440 - hypothetical protein, at 954,306 to 954,809
_04440
AO353_04445: AO353_04445 - GntR family transcriptional regulator, at 955,245 to 955,976
_04445
Position (kb) 954
955 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 953.473 kb on + strand, within AO353_04430 at 953.473 kb on + strand, within AO353_04430 at 953.521 kb on + strand at 953.552 kb on + strand at 953.552 kb on + strand at 953.552 kb on + strand at 953.553 kb on - strand at 953.553 kb on - strand at 953.553 kb on - strand at 953.553 kb on - strand at 953.553 kb on - strand at 953.553 kb on - strand at 953.584 kb on + strand at 953.585 kb on - strand at 953.585 kb on - strand at 953.585 kb on - strand at 953.588 kb on + strand at 953.588 kb on + strand at 953.588 kb on + strand at 953.588 kb on + strand at 953.588 kb on + strand at 953.588 kb on + strand at 953.589 kb on - strand at 953.589 kb on - strand at 953.589 kb on - strand at 953.589 kb on - strand at 953.688 kb on + strand at 953.688 kb on + strand at 953.688 kb on + strand at 953.689 kb on - strand at 953.694 kb on + strand at 953.695 kb on - strand at 953.695 kb on - strand at 953.695 kb on - strand at 953.784 kb on + strand, within AO353_04435 at 953.784 kb on + strand, within AO353_04435 at 953.784 kb on + strand, within AO353_04435 at 953.828 kb on + strand, within AO353_04435 at 953.828 kb on + strand, within AO353_04435 at 953.872 kb on + strand, within AO353_04435 at 953.873 kb on - strand, within AO353_04435 at 953.873 kb on - strand, within AO353_04435 at 953.873 kb on - strand, within AO353_04435 at 953.873 kb on - strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.014 kb on + strand, within AO353_04435 at 954.014 kb on + strand, within AO353_04435 at 954.015 kb on - strand, within AO353_04435 at 954.015 kb on - strand, within AO353_04435 at 954.015 kb on - strand, within AO353_04435 at 954.052 kb on + strand, within AO353_04435 at 954.052 kb on + strand, within AO353_04435 at 954.052 kb on + strand, within AO353_04435 at 954.052 kb on + strand, within AO353_04435 at 954.052 kb on + strand, within AO353_04435 at 954.052 kb on + strand, within AO353_04435 at 954.052 kb on + strand, within AO353_04435 at 954.052 kb on + strand, within AO353_04435 at 954.053 kb on - strand, within AO353_04435 at 954.053 kb on - strand, within AO353_04435 at 954.053 kb on - strand, within AO353_04435 at 954.053 kb on - strand, within AO353_04435 at 954.178 kb on + strand, within AO353_04435 at 954.178 kb on + strand, within AO353_04435 at 954.178 kb on + strand, within AO353_04435 at 954.178 kb on + strand, within AO353_04435 at 954.178 kb on + strand, within AO353_04435 at 954.179 kb on - strand, within AO353_04435 at 954.179 kb on - strand, within AO353_04435 at 954.179 kb on - strand, within AO353_04435 at 954.205 kb on + strand, within AO353_04435 at 954.206 kb on - strand, within AO353_04435 at 954.264 kb on + strand at 954.264 kb on + strand at 954.264 kb on + strand at 954.265 kb on - strand at 954.265 kb on - strand at 954.265 kb on - strand at 954.265 kb on - strand at 954.271 kb on + strand at 954.271 kb on + strand at 954.278 kb on - strand at 954.278 kb on - strand at 954.285 kb on - strand at 954.285 kb on - strand at 954.304 kb on + strand at 954.462 kb on + strand, within AO353_04440 at 954.462 kb on + strand, within AO353_04440 at 954.462 kb on + strand, within AO353_04440 at 954.522 kb on - strand, within AO353_04440 at 954.522 kb on - strand, within AO353_04440 at 954.522 kb on - strand, within AO353_04440 at 954.522 kb on - strand, within AO353_04440 at 954.537 kb on + strand, within AO353_04440 at 954.537 kb on + strand, within AO353_04440 at 954.537 kb on + strand, within AO353_04440 at 954.538 kb on - strand, within AO353_04440 at 954.538 kb on - strand, within AO353_04440 at 954.538 kb on - strand, within AO353_04440 at 954.538 kb on - strand, within AO353_04440 at 954.538 kb on - strand, within AO353_04440 at 954.763 kb on + strand at 954.763 kb on + strand at 954.763 kb on + strand at 954.763 kb on + strand at 954.764 kb on - strand at 954.764 kb on - strand at 954.764 kb on - strand at 954.764 kb on - strand at 954.764 kb on - strand at 954.764 kb on - strand at 954.785 kb on + strand at 954.786 kb on - strand at 954.786 kb on - strand at 954.819 kb on - strand at 954.819 kb on - strand at 954.819 kb on - strand at 954.819 kb on - strand at 954.892 kb on - strand at 954.892 kb on - strand at 954.983 kb on + strand at 954.983 kb on + strand at 954.984 kb on - strand at 954.985 kb on + strand at 954.985 kb on + strand at 954.986 kb on - strand at 955.025 kb on + strand at 955.026 kb on - strand at 955.026 kb on - strand at 955.066 kb on + strand at 955.067 kb on - strand at 955.067 kb on - strand at 955.090 kb on + strand at 955.091 kb on - strand at 955.238 kb on + strand at 955.238 kb on + strand at 955.238 kb on + strand at 955.239 kb on - strand at 955.239 kb on - strand at 955.239 kb on - strand at 955.239 kb on - strand at 955.239 kb on - strand at 955.296 kb on + strand at 955.297 kb on - strand at 955.297 kb on - strand at 955.297 kb on - strand at 955.632 kb on + strand, within AO353_04445 at 955.664 kb on + strand, within AO353_04445 at 955.664 kb on + strand, within AO353_04445 at 955.664 kb on + strand, within AO353_04445 at 955.665 kb on - strand, within AO353_04445 at 955.752 kb on + strand, within AO353_04445 at 955.753 kb on - strand, within AO353_04445 at 955.758 kb on + strand, within AO353_04445 at 955.758 kb on + strand, within AO353_04445
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 953,473 + AO353_04430 0.84 -1.0 953,473 + AO353_04430 0.84 -0.0 953,521 + +1.2 953,552 + +0.0 953,552 + +1.0 953,552 + -1.4 953,553 - -2.2 953,553 - +0.1 953,553 - +0.2 953,553 - +1.2 953,553 - +0.3 953,553 - -0.5 953,584 + +1.1 953,585 - +0.1 953,585 - +1.4 953,585 - +1.0 953,588 + -0.9 953,588 + -0.6 953,588 + +1.1 953,588 + +7.0 953,588 + +0.2 953,588 + +1.2 953,589 - +1.1 953,589 - +1.5 953,589 - +0.5 953,589 - +0.4 953,688 + +1.0 953,688 + +1.4 953,688 + -0.3 953,689 - -0.4 953,694 + -0.6 953,695 - +1.2 953,695 - -0.8 953,695 - -0.0 953,784 + AO353_04435 0.12 -0.0 953,784 + AO353_04435 0.12 -0.8 953,784 + AO353_04435 0.12 +0.5 953,828 + AO353_04435 0.20 -0.8 953,828 + AO353_04435 0.20 +0.5 953,872 + AO353_04435 0.28 -0.6 953,873 - AO353_04435 0.29 -1.6 953,873 - AO353_04435 0.29 -1.0 953,873 - AO353_04435 0.29 +0.2 953,873 - AO353_04435 0.29 -0.3 954,012 + AO353_04435 0.54 +1.0 954,012 + AO353_04435 0.54 -1.4 954,012 + AO353_04435 0.54 +2.5 954,012 + AO353_04435 0.54 +0.2 954,012 + AO353_04435 0.54 -1.2 954,012 + AO353_04435 0.54 +2.8 954,012 + AO353_04435 0.54 -0.4 954,012 + AO353_04435 0.54 +0.5 954,012 + AO353_04435 0.54 -1.6 954,012 + AO353_04435 0.54 -0.9 954,012 + AO353_04435 0.54 +0.9 954,012 + AO353_04435 0.54 -0.2 954,012 + AO353_04435 0.54 +1.2 954,012 + AO353_04435 0.54 +0.4 954,012 + AO353_04435 0.54 +0.9 954,012 + AO353_04435 0.54 -0.6 954,012 + AO353_04435 0.54 +2.1 954,012 + AO353_04435 0.54 -1.8 954,012 + AO353_04435 0.54 +2.5 954,013 - AO353_04435 0.54 -0.8 954,013 - AO353_04435 0.54 +2.5 954,013 - AO353_04435 0.54 -0.9 954,013 - AO353_04435 0.54 -0.8 954,013 - AO353_04435 0.54 -0.5 954,013 - AO353_04435 0.54 -0.9 954,013 - AO353_04435 0.54 -0.0 954,013 - AO353_04435 0.54 -0.0 954,013 - AO353_04435 0.54 -0.1 954,013 - AO353_04435 0.54 +1.0 954,013 - AO353_04435 0.54 -0.0 954,013 - AO353_04435 0.54 -0.0 954,013 - AO353_04435 0.54 -0.0 954,013 - AO353_04435 0.54 -1.2 954,014 + AO353_04435 0.54 -0.6 954,014 + AO353_04435 0.54 -0.3 954,015 - AO353_04435 0.54 +0.1 954,015 - AO353_04435 0.54 -1.2 954,015 - AO353_04435 0.54 -0.4 954,052 + AO353_04435 0.61 +0.7 954,052 + AO353_04435 0.61 +1.6 954,052 + AO353_04435 0.61 -0.0 954,052 + AO353_04435 0.61 +1.3 954,052 + AO353_04435 0.61 +0.2 954,052 + AO353_04435 0.61 +1.5 954,052 + AO353_04435 0.61 +0.2 954,052 + AO353_04435 0.61 +0.5 954,053 - AO353_04435 0.61 +0.5 954,053 - AO353_04435 0.61 +0.7 954,053 - AO353_04435 0.61 -0.2 954,053 - AO353_04435 0.61 -0.0 954,178 + AO353_04435 0.84 -1.0 954,178 + AO353_04435 0.84 -0.6 954,178 + AO353_04435 0.84 -1.0 954,178 + AO353_04435 0.84 -0.3 954,178 + AO353_04435 0.84 -1.4 954,179 - AO353_04435 0.84 -0.5 954,179 - AO353_04435 0.84 +1.0 954,179 - AO353_04435 0.84 +0.5 954,205 + AO353_04435 0.89 -1.6 954,206 - AO353_04435 0.89 -1.0 954,264 + -1.4 954,264 + -1.8 954,264 + -0.9 954,265 - -0.3 954,265 - -0.9 954,265 - -0.3 954,265 - -1.0 954,271 + +0.9 954,271 + +0.1 954,278 - +1.4 954,278 - +1.5 954,285 - +0.2 954,285 - +1.3 954,304 + -0.7 954,462 + AO353_04440 0.31 -0.8 954,462 + AO353_04440 0.31 -1.2 954,462 + AO353_04440 0.31 -0.0 954,522 - AO353_04440 0.43 -2.0 954,522 - AO353_04440 0.43 -1.0 954,522 - AO353_04440 0.43 -0.0 954,522 - AO353_04440 0.43 -0.8 954,537 + AO353_04440 0.46 -1.6 954,537 + AO353_04440 0.46 -0.5 954,537 + AO353_04440 0.46 -1.2 954,538 - AO353_04440 0.46 -1.5 954,538 - AO353_04440 0.46 -0.8 954,538 - AO353_04440 0.46 -0.6 954,538 - AO353_04440 0.46 -0.9 954,538 - AO353_04440 0.46 +0.0 954,763 + -0.8 954,763 + +0.7 954,763 + -1.8 954,763 + +2.0 954,764 - -0.3 954,764 - -0.0 954,764 - +2.0 954,764 - -1.2 954,764 - -1.7 954,764 - +1.3 954,785 + +0.9 954,786 - +1.0 954,786 - -1.2 954,819 - -1.5 954,819 - -0.3 954,819 - +0.5 954,819 - +0.6 954,892 - -0.5 954,892 - -0.1 954,983 + -1.2 954,983 + -1.4 954,984 - -2.6 954,985 + -0.5 954,985 + +0.2 954,986 - -1.5 955,025 + +0.5 955,026 - -0.2 955,026 - +0.2 955,066 + +0.5 955,067 - +1.2 955,067 - +0.5 955,090 + +1.5 955,091 - +0.5 955,238 + +0.4 955,238 + -0.0 955,238 + +1.0 955,239 - +0.3 955,239 - +1.5 955,239 - +0.3 955,239 - -2.3 955,239 - -0.3 955,296 + -0.2 955,297 - +0.0 955,297 - +0.1 955,297 - -1.2 955,632 + AO353_04445 0.53 -1.0 955,664 + AO353_04445 0.57 -0.3 955,664 + AO353_04445 0.57 -1.7 955,664 + AO353_04445 0.57 -0.5 955,665 - AO353_04445 0.57 +0.7 955,752 + AO353_04445 0.69 -0.4 955,753 - AO353_04445 0.69 +0.8 955,758 + AO353_04445 0.70 -1.2 955,758 + AO353_04445 0.70 +1.5
Or see this region's nucleotide sequence