Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04315 and AO353_04320 are separated by 380 nucleotides AO353_04320 and AO353_04325 are separated by 66 nucleotides AO353_04325 and AO353_04330 are separated by 149 nucleotides
AO353_04315: AO353_04315 - oxidoreductase, at 929,638 to 930,744
_04315
AO353_04320: AO353_04320 - single-stranded-DNA-specific exonuclease RecJ, at 931,125 to 932,834
_04320
AO353_04325: AO353_04325 - hypothetical protein, at 932,901 to 933,443
_04325
AO353_04330: AO353_04330 - CoA-transferase, at 933,593 to 934,792
_04330
Position (kb) 931
932
933 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 930.200 kb on + strand, within AO353_04315 at 930.201 kb on - strand, within AO353_04315 at 930.480 kb on + strand, within AO353_04315 at 930.481 kb on - strand, within AO353_04315 at 930.582 kb on + strand, within AO353_04315 at 930.582 kb on + strand, within AO353_04315 at 930.583 kb on - strand, within AO353_04315 at 930.586 kb on + strand, within AO353_04315 at 930.586 kb on + strand, within AO353_04315 at 930.586 kb on + strand, within AO353_04315 at 930.586 kb on + strand, within AO353_04315 at 930.587 kb on - strand, within AO353_04315 at 930.587 kb on - strand, within AO353_04315 at 930.587 kb on - strand, within AO353_04315 at 930.587 kb on - strand, within AO353_04315 at 930.665 kb on + strand at 930.665 kb on + strand at 930.665 kb on + strand at 930.666 kb on - strand at 930.666 kb on - strand at 930.720 kb on + strand at 930.721 kb on - strand at 930.721 kb on - strand at 930.721 kb on - strand at 930.721 kb on - strand at 930.721 kb on - strand at 930.722 kb on + strand at 930.722 kb on + strand at 930.722 kb on + strand at 930.723 kb on - strand at 930.723 kb on - strand at 930.723 kb on - strand at 930.723 kb on - strand at 930.723 kb on - strand at 930.723 kb on - strand at 930.723 kb on - strand at 930.723 kb on - strand at 930.791 kb on + strand at 930.792 kb on - strand at 930.879 kb on - strand at 930.879 kb on - strand at 930.879 kb on - strand at 930.886 kb on - strand at 930.886 kb on - strand at 930.934 kb on + strand at 930.934 kb on + strand at 930.934 kb on + strand at 930.934 kb on + strand at 930.934 kb on + strand at 930.935 kb on - strand at 930.935 kb on - strand at 930.935 kb on - strand at 930.935 kb on - strand at 930.935 kb on - strand at 930.937 kb on + strand at 930.937 kb on + strand at 930.937 kb on + strand at 930.937 kb on + strand at 930.937 kb on + strand at 930.938 kb on - strand at 930.938 kb on - strand at 931.010 kb on + strand at 931.010 kb on + strand at 931.049 kb on - strand at 931.049 kb on - strand at 931.152 kb on + strand at 931.153 kb on - strand at 931.153 kb on - strand at 931.198 kb on + strand at 931.198 kb on + strand at 931.198 kb on + strand at 931.198 kb on + strand at 931.198 kb on + strand at 931.199 kb on - strand at 931.302 kb on + strand, within AO353_04320 at 931.303 kb on - strand, within AO353_04320 at 931.303 kb on - strand, within AO353_04320 at 931.303 kb on - strand, within AO353_04320 at 931.303 kb on - strand, within AO353_04320 at 931.582 kb on + strand, within AO353_04320 at 931.582 kb on + strand, within AO353_04320 at 931.582 kb on + strand, within AO353_04320 at 931.582 kb on + strand, within AO353_04320 at 931.583 kb on - strand, within AO353_04320 at 931.583 kb on - strand, within AO353_04320 at 931.583 kb on - strand, within AO353_04320 at 931.703 kb on + strand, within AO353_04320 at 931.704 kb on - strand, within AO353_04320 at 931.704 kb on - strand, within AO353_04320 at 931.704 kb on - strand, within AO353_04320 at 931.717 kb on + strand, within AO353_04320 at 931.718 kb on - strand, within AO353_04320 at 932.021 kb on + strand, within AO353_04320 at 932.258 kb on - strand, within AO353_04320 at 932.258 kb on - strand, within AO353_04320 at 932.510 kb on - strand, within AO353_04320 at 932.533 kb on + strand, within AO353_04320 at 932.534 kb on - strand, within AO353_04320 at 932.534 kb on - strand, within AO353_04320 at 932.758 kb on + strand at 932.758 kb on + strand at 932.758 kb on + strand at 932.760 kb on + strand at 932.783 kb on + strand at 932.783 kb on + strand at 932.784 kb on - strand at 932.784 kb on - strand at 932.784 kb on - strand at 932.784 kb on - strand at 932.814 kb on + strand at 932.814 kb on + strand at 932.815 kb on - strand at 932.815 kb on - strand at 932.815 kb on - strand at 932.815 kb on - strand at 932.859 kb on + strand at 932.859 kb on + strand at 932.859 kb on + strand at 932.859 kb on + strand at 932.859 kb on + strand at 932.859 kb on + strand at 932.859 kb on + strand at 932.859 kb on + strand at 932.859 kb on + strand at 932.859 kb on + strand at 932.859 kb on + strand at 932.859 kb on + strand at 932.859 kb on + strand at 932.859 kb on + strand at 932.859 kb on + strand at 932.860 kb on - strand at 932.860 kb on - strand at 932.860 kb on - strand at 932.860 kb on - strand at 932.860 kb on - strand at 932.860 kb on - strand at 932.860 kb on - strand at 932.860 kb on - strand at 932.860 kb on - strand at 932.860 kb on - strand at 932.863 kb on + strand at 932.863 kb on + strand at 932.863 kb on + strand at 932.863 kb on + strand at 932.863 kb on + strand at 932.863 kb on + strand at 932.864 kb on - strand at 932.864 kb on - strand at 932.864 kb on - strand at 932.864 kb on - strand at 932.864 kb on - strand at 932.868 kb on + strand at 932.868 kb on + strand at 932.869 kb on - strand at 932.869 kb on - strand at 933.003 kb on - strand, within AO353_04325 at 933.292 kb on + strand, within AO353_04325 at 933.293 kb on - strand, within AO353_04325 at 933.305 kb on - strand, within AO353_04325 at 933.380 kb on - strand, within AO353_04325 at 933.421 kb on + strand at 933.421 kb on + strand at 933.421 kb on + strand at 933.421 kb on + strand at 933.421 kb on + strand at 933.421 kb on + strand at 933.421 kb on + strand at 933.421 kb on + strand at 933.421 kb on + strand at 933.421 kb on + strand at 933.422 kb on - strand at 933.422 kb on - strand at 933.422 kb on - strand at 933.459 kb on + strand at 933.460 kb on - strand at 933.546 kb on - strand at 933.550 kb on + strand at 933.550 kb on + strand at 933.550 kb on + strand at 933.551 kb on - strand at 933.560 kb on + strand at 933.560 kb on + strand at 933.560 kb on + strand at 933.561 kb on - strand at 933.580 kb on + strand at 933.581 kb on - strand at 933.673 kb on + strand at 933.673 kb on + strand at 933.673 kb on + strand at 933.674 kb on - strand at 933.674 kb on - strand at 933.674 kb on - strand at 933.674 kb on - strand at 933.674 kb on - strand at 933.755 kb on + strand, within AO353_04330 at 933.755 kb on + strand, within AO353_04330 at 933.756 kb on - strand, within AO353_04330 at 933.756 kb on - strand, within AO353_04330 at 933.756 kb on - strand, within AO353_04330 at 933.814 kb on - strand, within AO353_04330
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 930,200 + AO353_04315 0.51 -1.5 930,201 - AO353_04315 0.51 -0.0 930,480 + AO353_04315 0.76 -0.3 930,481 - AO353_04315 0.76 -2.3 930,582 + AO353_04315 0.85 +0.8 930,582 + AO353_04315 0.85 -0.3 930,583 - AO353_04315 0.85 +0.6 930,586 + AO353_04315 0.86 -1.3 930,586 + AO353_04315 0.86 -1.3 930,586 + AO353_04315 0.86 -0.1 930,586 + AO353_04315 0.86 +0.2 930,587 - AO353_04315 0.86 -1.4 930,587 - AO353_04315 0.86 -0.3 930,587 - AO353_04315 0.86 -1.3 930,587 - AO353_04315 0.86 -0.8 930,665 + -1.7 930,665 + +1.7 930,665 + +0.6 930,666 - +0.2 930,666 - -0.9 930,720 + +0.4 930,721 - +1.4 930,721 - -0.8 930,721 - -2.6 930,721 - -0.9 930,721 - +0.9 930,722 + -0.9 930,722 + -0.4 930,722 + -1.1 930,723 - -0.6 930,723 - -0.4 930,723 - -0.3 930,723 - +0.7 930,723 - -2.1 930,723 - +0.0 930,723 - +2.1 930,723 - +1.0 930,791 + -0.6 930,792 - +0.0 930,879 - +1.0 930,879 - -0.1 930,879 - +0.0 930,886 - -0.8 930,886 - +0.2 930,934 + -1.0 930,934 + -0.1 930,934 + -1.0 930,934 + +0.7 930,934 + +0.2 930,935 - -0.3 930,935 - -0.3 930,935 - -0.8 930,935 - +1.0 930,935 - -1.8 930,937 + -1.3 930,937 + -1.5 930,937 + -0.8 930,937 + +1.6 930,937 + +0.4 930,938 - -0.0 930,938 - -1.0 931,010 + -1.1 931,010 + -2.0 931,049 - -0.1 931,049 - +0.1 931,152 + +0.7 931,153 - -1.1 931,153 - +1.3 931,198 + +1.0 931,198 + -0.8 931,198 + -0.2 931,198 + +2.0 931,198 + +0.1 931,199 - -0.4 931,302 + AO353_04320 0.10 +1.1 931,303 - AO353_04320 0.10 +0.8 931,303 - AO353_04320 0.10 -1.1 931,303 - AO353_04320 0.10 +1.0 931,303 - AO353_04320 0.10 +0.3 931,582 + AO353_04320 0.27 +1.0 931,582 + AO353_04320 0.27 -0.8 931,582 + AO353_04320 0.27 +1.0 931,582 + AO353_04320 0.27 +1.0 931,583 - AO353_04320 0.27 -0.0 931,583 - AO353_04320 0.27 -0.3 931,583 - AO353_04320 0.27 +0.2 931,703 + AO353_04320 0.34 +1.1 931,704 - AO353_04320 0.34 -0.5 931,704 - AO353_04320 0.34 +1.0 931,704 - AO353_04320 0.34 -1.1 931,717 + AO353_04320 0.35 +1.0 931,718 - AO353_04320 0.35 -1.5 932,021 + AO353_04320 0.52 -0.0 932,258 - AO353_04320 0.66 -1.0 932,258 - AO353_04320 0.66 -0.0 932,510 - AO353_04320 0.81 +0.6 932,533 + AO353_04320 0.82 +0.1 932,534 - AO353_04320 0.82 -1.0 932,534 - AO353_04320 0.82 +0.5 932,758 + -0.1 932,758 + +0.9 932,758 + -0.8 932,760 + +1.7 932,783 + +0.8 932,783 + -0.4 932,784 - -0.0 932,784 - -0.4 932,784 - -0.4 932,784 - +3.1 932,814 + -0.7 932,814 + -0.1 932,815 - +1.0 932,815 - +0.2 932,815 - -1.0 932,815 - +2.1 932,859 + -1.8 932,859 + +0.3 932,859 + -0.4 932,859 + +0.7 932,859 + +0.2 932,859 + -1.0 932,859 + +0.6 932,859 + -0.8 932,859 + -1.3 932,859 + +0.6 932,859 + -1.3 932,859 + +1.3 932,859 + -0.5 932,859 + -0.0 932,859 + +0.9 932,860 - -0.0 932,860 - +0.7 932,860 - +1.2 932,860 - +0.0 932,860 - -0.8 932,860 - +2.8 932,860 - -0.0 932,860 - -1.0 932,860 - +0.5 932,860 - +1.3 932,863 + +0.6 932,863 + -1.8 932,863 + +0.2 932,863 + -0.0 932,863 + -1.3 932,863 + -0.8 932,864 - +1.0 932,864 - -0.7 932,864 - +0.1 932,864 - +1.4 932,864 - +0.3 932,868 + -0.3 932,868 + +1.6 932,869 - -0.3 932,869 - +1.1 933,003 - AO353_04325 0.19 +1.0 933,292 + AO353_04325 0.72 -0.9 933,293 - AO353_04325 0.72 +2.2 933,305 - AO353_04325 0.74 -0.3 933,380 - AO353_04325 0.88 +0.2 933,421 + -0.3 933,421 + +2.2 933,421 + -0.9 933,421 + -1.1 933,421 + -0.6 933,421 + +0.7 933,421 + -0.0 933,421 + -0.4 933,421 + +1.0 933,421 + -0.0 933,422 - -1.8 933,422 - +5.0 933,422 - +0.3 933,459 + -1.3 933,460 - -1.1 933,546 - -1.5 933,550 + -0.4 933,550 + +2.1 933,550 + +0.8 933,551 - -1.0 933,560 + -0.1 933,560 + +1.0 933,560 + -1.0 933,561 - +0.3 933,580 + +0.7 933,581 - -0.1 933,673 + -1.2 933,673 + +0.7 933,673 + -1.4 933,674 - +0.8 933,674 - +1.3 933,674 - +0.8 933,674 - -0.7 933,674 - +0.0 933,755 + AO353_04330 0.14 -0.4 933,755 + AO353_04330 0.14 +0.7 933,756 - AO353_04330 0.14 +0.6 933,756 - AO353_04330 0.14 -0.3 933,756 - AO353_04330 0.14 -0.0 933,814 - AO353_04330 0.18 -1.5
Or see this region's nucleotide sequence