Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04275

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04270 and AO353_04275 are separated by 237 nucleotidesAO353_04275 and AO353_04280 are separated by 1 nucleotidesAO353_04280 and AO353_04285 overlap by 11 nucleotides AO353_04270: AO353_04270 - spermidine/putrescine ABC transporter substrate-binding protein, at 918,822 to 919,973 _04270 AO353_04275: AO353_04275 - polyamine ABC transporter ATP-binding protein, at 920,211 to 921,248 _04275 AO353_04280: AO353_04280 - spermidine/putrescine ABC transporter permease, at 921,250 to 922,197 _04280 AO353_04285: AO353_04285 - spermidine/putrescine ABC transporter permease, at 922,187 to 923,029 _04285 Position (kb) 920 921 922Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 919.218 kb on + strand, within AO353_04270at 919.218 kb on + strand, within AO353_04270at 919.218 kb on + strand, within AO353_04270at 919.218 kb on + strand, within AO353_04270at 919.218 kb on + strand, within AO353_04270at 919.218 kb on + strand, within AO353_04270at 919.218 kb on + strand, within AO353_04270at 919.218 kb on + strand, within AO353_04270at 919.219 kb on - strand, within AO353_04270at 919.219 kb on - strand, within AO353_04270at 919.219 kb on - strand, within AO353_04270at 919.219 kb on - strand, within AO353_04270at 919.219 kb on - strand, within AO353_04270at 919.219 kb on - strand, within AO353_04270at 919.219 kb on - strand, within AO353_04270at 919.239 kb on + strand, within AO353_04270at 919.240 kb on - strand, within AO353_04270at 919.251 kb on + strand, within AO353_04270at 919.251 kb on + strand, within AO353_04270at 919.252 kb on - strand, within AO353_04270at 919.252 kb on - strand, within AO353_04270at 919.278 kb on + strand, within AO353_04270at 919.278 kb on + strand, within AO353_04270at 919.278 kb on + strand, within AO353_04270at 919.279 kb on - strand, within AO353_04270at 919.279 kb on - strand, within AO353_04270at 919.279 kb on - strand, within AO353_04270at 919.279 kb on - strand, within AO353_04270at 919.279 kb on - strand, within AO353_04270at 919.307 kb on + strand, within AO353_04270at 919.307 kb on + strand, within AO353_04270at 919.307 kb on + strand, within AO353_04270at 919.307 kb on + strand, within AO353_04270at 919.307 kb on + strand, within AO353_04270at 919.308 kb on - strand, within AO353_04270at 919.308 kb on - strand, within AO353_04270at 919.380 kb on + strand, within AO353_04270at 919.380 kb on + strand, within AO353_04270at 919.380 kb on + strand, within AO353_04270at 919.380 kb on + strand, within AO353_04270at 919.380 kb on + strand, within AO353_04270at 919.381 kb on - strand, within AO353_04270at 919.381 kb on - strand, within AO353_04270at 919.381 kb on - strand, within AO353_04270at 919.381 kb on - strand, within AO353_04270at 919.381 kb on - strand, within AO353_04270at 919.381 kb on - strand, within AO353_04270at 919.381 kb on - strand, within AO353_04270at 919.381 kb on - strand, within AO353_04270at 919.395 kb on + strand, within AO353_04270at 919.395 kb on + strand, within AO353_04270at 919.395 kb on + strand, within AO353_04270at 919.395 kb on + strand, within AO353_04270at 919.395 kb on + strand, within AO353_04270at 919.395 kb on + strand, within AO353_04270at 919.395 kb on + strand, within AO353_04270at 919.395 kb on + strand, within AO353_04270at 919.396 kb on - strand, within AO353_04270at 919.396 kb on - strand, within AO353_04270at 919.396 kb on - strand, within AO353_04270at 919.396 kb on - strand, within AO353_04270at 919.396 kb on - strand, within AO353_04270at 919.396 kb on - strand, within AO353_04270at 919.416 kb on + strand, within AO353_04270at 919.417 kb on - strand, within AO353_04270at 919.417 kb on - strand, within AO353_04270at 919.459 kb on - strand, within AO353_04270at 919.479 kb on + strand, within AO353_04270at 919.479 kb on + strand, within AO353_04270at 919.479 kb on + strand, within AO353_04270at 919.479 kb on + strand, within AO353_04270at 919.479 kb on + strand, within AO353_04270at 919.531 kb on - strand, within AO353_04270at 919.602 kb on + strand, within AO353_04270at 919.602 kb on + strand, within AO353_04270at 919.602 kb on + strand, within AO353_04270at 919.602 kb on + strand, within AO353_04270at 919.602 kb on + strand, within AO353_04270at 919.603 kb on - strand, within AO353_04270at 919.603 kb on - strand, within AO353_04270at 919.603 kb on - strand, within AO353_04270at 919.603 kb on - strand, within AO353_04270at 919.603 kb on - strand, within AO353_04270at 919.603 kb on - strand, within AO353_04270at 919.725 kb on + strand, within AO353_04270at 919.725 kb on + strand, within AO353_04270at 919.726 kb on - strand, within AO353_04270at 919.726 kb on - strand, within AO353_04270at 919.771 kb on + strand, within AO353_04270at 919.772 kb on - strand, within AO353_04270at 919.926 kb on + strandat 919.926 kb on + strandat 919.926 kb on + strandat 919.927 kb on - strandat 919.927 kb on - strandat 919.927 kb on - strandat 919.927 kb on - strandat 919.927 kb on - strandat 919.927 kb on - strandat 919.947 kb on + strandat 919.947 kb on + strandat 919.947 kb on + strandat 919.947 kb on + strandat 919.948 kb on - strandat 919.948 kb on - strandat 919.948 kb on - strandat 919.967 kb on + strandat 919.971 kb on + strandat 919.971 kb on + strandat 919.971 kb on + strandat 919.971 kb on + strandat 919.972 kb on - strandat 919.972 kb on - strandat 919.972 kb on - strandat 919.972 kb on - strandat 919.972 kb on - strandat 920.056 kb on + strandat 920.056 kb on + strandat 920.057 kb on - strandat 920.128 kb on + strandat 920.128 kb on + strandat 920.128 kb on + strandat 920.128 kb on + strandat 920.128 kb on + strandat 920.129 kb on - strandat 920.481 kb on - strand, within AO353_04275at 920.481 kb on - strand, within AO353_04275at 920.481 kb on - strand, within AO353_04275at 920.505 kb on + strand, within AO353_04275at 920.505 kb on + strand, within AO353_04275at 920.506 kb on - strand, within AO353_04275at 920.600 kb on + strand, within AO353_04275at 920.600 kb on + strand, within AO353_04275at 920.877 kb on + strand, within AO353_04275at 920.877 kb on + strand, within AO353_04275at 920.877 kb on + strand, within AO353_04275at 920.878 kb on - strand, within AO353_04275at 920.878 kb on - strand, within AO353_04275at 920.878 kb on - strand, within AO353_04275at 920.878 kb on - strand, within AO353_04275at 920.878 kb on - strand, within AO353_04275at 920.878 kb on - strand, within AO353_04275at 920.878 kb on - strand, within AO353_04275at 921.067 kb on - strand, within AO353_04275at 921.337 kb on + strandat 921.338 kb on - strandat 921.338 kb on - strandat 921.385 kb on + strand, within AO353_04280at 921.385 kb on + strand, within AO353_04280at 921.385 kb on + strand, within AO353_04280at 921.385 kb on + strand, within AO353_04280at 921.385 kb on + strand, within AO353_04280at 921.386 kb on - strand, within AO353_04280at 921.386 kb on - strand, within AO353_04280at 921.386 kb on - strand, within AO353_04280at 921.424 kb on + strand, within AO353_04280at 921.424 kb on + strand, within AO353_04280at 921.424 kb on + strand, within AO353_04280at 921.424 kb on + strand, within AO353_04280at 921.425 kb on - strand, within AO353_04280at 921.425 kb on - strand, within AO353_04280at 921.583 kb on + strand, within AO353_04280at 921.583 kb on + strand, within AO353_04280at 921.583 kb on + strand, within AO353_04280at 921.583 kb on + strand, within AO353_04280at 921.583 kb on + strand, within AO353_04280at 921.583 kb on + strand, within AO353_04280at 921.583 kb on + strand, within AO353_04280at 921.583 kb on + strand, within AO353_04280at 921.583 kb on + strand, within AO353_04280at 921.584 kb on - strand, within AO353_04280at 921.584 kb on - strand, within AO353_04280at 921.584 kb on - strand, within AO353_04280at 921.586 kb on + strand, within AO353_04280at 921.586 kb on + strand, within AO353_04280at 921.586 kb on + strand, within AO353_04280at 921.586 kb on + strand, within AO353_04280at 921.586 kb on + strand, within AO353_04280at 921.586 kb on + strand, within AO353_04280at 921.586 kb on + strand, within AO353_04280at 921.586 kb on + strand, within AO353_04280at 921.586 kb on + strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.598 kb on + strand, within AO353_04280at 921.599 kb on - strand, within AO353_04280at 921.599 kb on - strand, within AO353_04280at 921.628 kb on + strand, within AO353_04280at 921.629 kb on - strand, within AO353_04280at 921.661 kb on + strand, within AO353_04280at 921.661 kb on + strand, within AO353_04280at 921.661 kb on + strand, within AO353_04280at 921.661 kb on + strand, within AO353_04280at 921.661 kb on + strand, within AO353_04280at 921.661 kb on + strand, within AO353_04280at 921.662 kb on - strand, within AO353_04280at 921.662 kb on - strand, within AO353_04280at 921.662 kb on - strand, within AO353_04280at 921.662 kb on - strand, within AO353_04280at 921.662 kb on - strand, within AO353_04280at 921.662 kb on - strand, within AO353_04280at 921.662 kb on - strand, within AO353_04280at 921.676 kb on + strand, within AO353_04280at 921.676 kb on + strand, within AO353_04280at 921.832 kb on + strand, within AO353_04280at 921.833 kb on - strand, within AO353_04280at 921.833 kb on - strand, within AO353_04280at 921.833 kb on - strand, within AO353_04280at 921.833 kb on - strand, within AO353_04280at 921.917 kb on + strand, within AO353_04280at 921.917 kb on + strand, within AO353_04280at 921.918 kb on - strand, within AO353_04280at 921.918 kb on - strand, within AO353_04280at 921.918 kb on - strand, within AO353_04280at 921.918 kb on - strand, within AO353_04280at 922.054 kb on + strand, within AO353_04280at 922.054 kb on + strand, within AO353_04280at 922.055 kb on - strand, within AO353_04280at 922.075 kb on + strand, within AO353_04280at 922.075 kb on + strand, within AO353_04280at 922.075 kb on + strand, within AO353_04280at 922.076 kb on - strand, within AO353_04280at 922.139 kb on + strandat 922.139 kb on + strandat 922.139 kb on + strandat 922.139 kb on + strandat 922.140 kb on - strandat 922.153 kb on + strandat 922.154 kb on - strandat 922.154 kb on - strandat 922.154 kb on - strandat 922.154 kb on - strandat 922.154 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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919,218 + AO353_04270 0.34 -1.4
919,218 + AO353_04270 0.34 -0.4
919,218 + AO353_04270 0.34 -0.3
919,218 + AO353_04270 0.34 +0.4
919,218 + AO353_04270 0.34 +1.7
919,218 + AO353_04270 0.34 +0.1
919,218 + AO353_04270 0.34 -1.1
919,218 + AO353_04270 0.34 -0.7
919,219 - AO353_04270 0.34 -0.4
919,219 - AO353_04270 0.34 +1.7
919,219 - AO353_04270 0.34 +0.6
919,219 - AO353_04270 0.34 +1.6
919,219 - AO353_04270 0.34 +4.1
919,219 - AO353_04270 0.34 +0.7
919,219 - AO353_04270 0.34 -1.1
919,239 + AO353_04270 0.36 -1.9
919,240 - AO353_04270 0.36 -1.4
919,251 + AO353_04270 0.37 -1.1
919,251 + AO353_04270 0.37 -0.9
919,252 - AO353_04270 0.37 -0.1
919,252 - AO353_04270 0.37 -1.0
919,278 + AO353_04270 0.40 -0.1
919,278 + AO353_04270 0.40 -0.4
919,278 + AO353_04270 0.40 -0.1
919,279 - AO353_04270 0.40 -0.0
919,279 - AO353_04270 0.40 -0.0
919,279 - AO353_04270 0.40 -0.2
919,279 - AO353_04270 0.40 -0.3
919,279 - AO353_04270 0.40 -1.0
919,307 + AO353_04270 0.42 +0.2
919,307 + AO353_04270 0.42 +0.7
919,307 + AO353_04270 0.42 +0.3
919,307 + AO353_04270 0.42 +3.0
919,307 + AO353_04270 0.42 +0.4
919,308 - AO353_04270 0.42 -0.6
919,308 - AO353_04270 0.42 -2.4
919,380 + AO353_04270 0.48 -0.2
919,380 + AO353_04270 0.48 -0.8
919,380 + AO353_04270 0.48 -0.4
919,380 + AO353_04270 0.48 +1.4
919,380 + AO353_04270 0.48 +0.7
919,381 - AO353_04270 0.49 -1.3
919,381 - AO353_04270 0.49 -0.4
919,381 - AO353_04270 0.49 -1.3
919,381 - AO353_04270 0.49 +1.6
919,381 - AO353_04270 0.49 +1.0
919,381 - AO353_04270 0.49 -0.6
919,381 - AO353_04270 0.49 +2.7
919,381 - AO353_04270 0.49 +0.2
919,395 + AO353_04270 0.50 +1.1
919,395 + AO353_04270 0.50 -0.4
919,395 + AO353_04270 0.50 -0.6
919,395 + AO353_04270 0.50 +1.0
919,395 + AO353_04270 0.50 -0.8
919,395 + AO353_04270 0.50 +2.1
919,395 + AO353_04270 0.50 -0.5
919,395 + AO353_04270 0.50 -0.6
919,396 - AO353_04270 0.50 -0.6
919,396 - AO353_04270 0.50 +0.1
919,396 - AO353_04270 0.50 -0.3
919,396 - AO353_04270 0.50 +0.9
919,396 - AO353_04270 0.50 -2.1
919,396 - AO353_04270 0.50 -0.5
919,416 + AO353_04270 0.52 +1.6
919,417 - AO353_04270 0.52 -2.1
919,417 - AO353_04270 0.52 +1.6
919,459 - AO353_04270 0.55 +1.0
919,479 + AO353_04270 0.57 -0.4
919,479 + AO353_04270 0.57 +1.8
919,479 + AO353_04270 0.57 +1.0
919,479 + AO353_04270 0.57 +0.2
919,479 + AO353_04270 0.57 +0.4
919,531 - AO353_04270 0.62 -0.3
919,602 + AO353_04270 0.68 -0.9
919,602 + AO353_04270 0.68 -0.1
919,602 + AO353_04270 0.68 -0.9
919,602 + AO353_04270 0.68 +2.0
919,602 + AO353_04270 0.68 +0.1
919,603 - AO353_04270 0.68 -1.4
919,603 - AO353_04270 0.68 +2.0
919,603 - AO353_04270 0.68 -1.4
919,603 - AO353_04270 0.68 -0.7
919,603 - AO353_04270 0.68 -0.8
919,603 - AO353_04270 0.68 +0.2
919,725 + AO353_04270 0.78 -0.8
919,725 + AO353_04270 0.78 +0.6
919,726 - AO353_04270 0.78 +2.1
919,726 - AO353_04270 0.78 +0.6
919,771 + AO353_04270 0.82 -0.1
919,772 - AO353_04270 0.82 -0.6
919,926 + +0.3
919,926 + +0.7
919,926 + -0.7
919,927 - +0.0
919,927 - -1.4
919,927 - +1.6
919,927 - +1.6
919,927 - -0.1
919,927 - -0.5
919,947 + -0.4
919,947 + -0.8
919,947 + +2.6
919,947 + -1.0
919,948 - +0.3
919,948 - +0.2
919,948 - -0.8
919,967 + +0.8
919,971 + -0.5
919,971 + -1.2
919,971 + +0.2
919,971 + +0.8
919,972 - -1.9
919,972 - -0.4
919,972 - -1.0
919,972 - -0.4
919,972 - -1.4
920,056 + -0.8
920,056 + +0.2
920,057 - +1.1
920,128 + -0.9
920,128 + -0.3
920,128 + -0.6
920,128 + +0.4
920,128 + -1.0
920,129 - -0.2
920,481 - AO353_04275 0.26 +0.6
920,481 - AO353_04275 0.26 -1.4
920,481 - AO353_04275 0.26 -0.1
920,505 + AO353_04275 0.28 -1.5
920,505 + AO353_04275 0.28 +1.1
920,506 - AO353_04275 0.28 +0.6
920,600 + AO353_04275 0.37 +0.6
920,600 + AO353_04275 0.37 +0.1
920,877 + AO353_04275 0.64 -0.9
920,877 + AO353_04275 0.64 -0.1
920,877 + AO353_04275 0.64 -0.3
920,878 - AO353_04275 0.64 +1.1
920,878 - AO353_04275 0.64 -0.0
920,878 - AO353_04275 0.64 -2.1
920,878 - AO353_04275 0.64 +0.6
920,878 - AO353_04275 0.64 +0.7
920,878 - AO353_04275 0.64 -0.8
920,878 - AO353_04275 0.64 +2.0
921,067 - AO353_04275 0.82 +0.6
921,337 + +0.0
921,338 - -0.7
921,338 - +0.7
921,385 + AO353_04280 0.14 +1.2
921,385 + AO353_04280 0.14 -0.3
921,385 + AO353_04280 0.14 +1.6
921,385 + AO353_04280 0.14 -0.1
921,385 + AO353_04280 0.14 -0.9
921,386 - AO353_04280 0.14 -1.5
921,386 - AO353_04280 0.14 -0.8
921,386 - AO353_04280 0.14 -1.8
921,424 + AO353_04280 0.18 +0.7
921,424 + AO353_04280 0.18 +0.5
921,424 + AO353_04280 0.18 -1.1
921,424 + AO353_04280 0.18 -0.8
921,425 - AO353_04280 0.18 -0.3
921,425 - AO353_04280 0.18 -1.6
921,583 + AO353_04280 0.35 -1.1
921,583 + AO353_04280 0.35 -2.1
921,583 + AO353_04280 0.35 -0.2
921,583 + AO353_04280 0.35 -0.8
921,583 + AO353_04280 0.35 -0.0
921,583 + AO353_04280 0.35 +1.0
921,583 + AO353_04280 0.35 +2.7
921,583 + AO353_04280 0.35 -1.4
921,583 + AO353_04280 0.35 +0.2
921,584 - AO353_04280 0.35 +0.1
921,584 - AO353_04280 0.35 -0.8
921,584 - AO353_04280 0.35 +0.1
921,586 + AO353_04280 0.35 +0.1
921,586 + AO353_04280 0.35 +1.1
921,586 + AO353_04280 0.35 +0.2
921,586 + AO353_04280 0.35 -1.1
921,586 + AO353_04280 0.35 -1.7
921,586 + AO353_04280 0.35 -0.7
921,586 + AO353_04280 0.35 +0.4
921,586 + AO353_04280 0.35 -1.4
921,586 + AO353_04280 0.35 -0.9
921,587 - AO353_04280 0.36 -0.3
921,587 - AO353_04280 0.36 -0.3
921,587 - AO353_04280 0.36 +1.6
921,587 - AO353_04280 0.36 -0.6
921,587 - AO353_04280 0.36 -1.1
921,587 - AO353_04280 0.36 -0.3
921,587 - AO353_04280 0.36 -1.6
921,587 - AO353_04280 0.36 -0.9
921,587 - AO353_04280 0.36 -0.1
921,587 - AO353_04280 0.36 -1.4
921,598 + AO353_04280 0.37 +0.4
921,599 - AO353_04280 0.37 +0.7
921,599 - AO353_04280 0.37 -0.4
921,628 + AO353_04280 0.40 -0.6
921,629 - AO353_04280 0.40 -2.2
921,661 + AO353_04280 0.43 -1.4
921,661 + AO353_04280 0.43 -1.4
921,661 + AO353_04280 0.43 -0.0
921,661 + AO353_04280 0.43 +1.7
921,661 + AO353_04280 0.43 +1.1
921,661 + AO353_04280 0.43 -1.8
921,662 - AO353_04280 0.43 -0.1
921,662 - AO353_04280 0.43 +0.2
921,662 - AO353_04280 0.43 -1.5
921,662 - AO353_04280 0.43 +0.6
921,662 - AO353_04280 0.43 +1.6
921,662 - AO353_04280 0.43 +1.2
921,662 - AO353_04280 0.43 -0.0
921,676 + AO353_04280 0.45 -1.3
921,676 + AO353_04280 0.45 -0.8
921,832 + AO353_04280 0.61 +0.2
921,833 - AO353_04280 0.61 +0.4
921,833 - AO353_04280 0.61 +1.4
921,833 - AO353_04280 0.61 -1.8
921,833 - AO353_04280 0.61 +1.0
921,917 + AO353_04280 0.70 +0.2
921,917 + AO353_04280 0.70 +0.2
921,918 - AO353_04280 0.70 -1.0
921,918 - AO353_04280 0.70 -0.7
921,918 - AO353_04280 0.70 +0.2
921,918 - AO353_04280 0.70 +0.3
922,054 + AO353_04280 0.85 -0.3
922,054 + AO353_04280 0.85 +1.0
922,055 - AO353_04280 0.85 +0.3
922,075 + AO353_04280 0.87 -1.4
922,075 + AO353_04280 0.87 -0.4
922,075 + AO353_04280 0.87 -1.7
922,076 - AO353_04280 0.87 +0.3
922,139 + -0.8
922,139 + -1.9
922,139 + -1.3
922,139 + -1.4
922,140 - -2.3
922,153 + +1.4
922,154 - -1.7
922,154 - +0.6
922,154 - +1.0
922,154 - +0.2
922,154 - -0.5

Or see this region's nucleotide sequence