Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03750 and AO353_03755 are separated by 345 nucleotides AO353_03755 and AO353_03760 are separated by 22 nucleotides AO353_03760 and AO353_03765 are separated by 253 nucleotides
AO353_03750: AO353_03750 - hypothetical protein, at 801,890 to 803,221
_03750
AO353_03755: AO353_03755 - hypothetical protein, at 803,567 to 803,956
_03755
AO353_03760: AO353_03760 - pilus assembly protein PilZ, at 803,979 to 804,338
_03760
AO353_03765: AO353_03765 - hypothetical protein, at 804,592 to 804,966
_03765
Position (kb) 803
804 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 802.706 kb on + strand, within AO353_03750 at 802.706 kb on + strand, within AO353_03750 at 802.706 kb on + strand, within AO353_03750 at 802.706 kb on + strand, within AO353_03750 at 802.706 kb on + strand, within AO353_03750 at 802.706 kb on + strand, within AO353_03750 at 802.706 kb on + strand, within AO353_03750 at 802.706 kb on + strand, within AO353_03750 at 802.706 kb on + strand, within AO353_03750 at 802.707 kb on - strand, within AO353_03750 at 802.707 kb on - strand, within AO353_03750 at 802.707 kb on - strand, within AO353_03750 at 802.707 kb on - strand, within AO353_03750 at 802.707 kb on - strand, within AO353_03750 at 802.707 kb on - strand, within AO353_03750 at 802.707 kb on - strand, within AO353_03750 at 802.716 kb on + strand, within AO353_03750 at 802.716 kb on + strand at 802.717 kb on - strand, within AO353_03750 at 802.717 kb on - strand, within AO353_03750 at 802.769 kb on + strand, within AO353_03750 at 802.770 kb on - strand, within AO353_03750 at 802.789 kb on + strand, within AO353_03750 at 802.790 kb on - strand, within AO353_03750 at 802.823 kb on + strand, within AO353_03750 at 802.856 kb on + strand, within AO353_03750 at 802.857 kb on - strand, within AO353_03750 at 803.017 kb on - strand, within AO353_03750 at 803.069 kb on + strand, within AO353_03750 at 803.087 kb on + strand, within AO353_03750 at 803.087 kb on + strand, within AO353_03750 at 803.087 kb on + strand, within AO353_03750 at 803.087 kb on + strand, within AO353_03750 at 803.087 kb on + strand, within AO353_03750 at 803.087 kb on + strand, within AO353_03750 at 803.087 kb on + strand, within AO353_03750 at 803.087 kb on + strand, within AO353_03750 at 803.088 kb on - strand at 803.088 kb on - strand at 803.190 kb on - strand at 803.190 kb on - strand at 803.220 kb on - strand at 803.278 kb on + strand at 803.279 kb on - strand at 803.338 kb on + strand at 803.379 kb on + strand at 803.385 kb on + strand at 803.385 kb on + strand at 803.385 kb on + strand at 803.385 kb on + strand at 803.385 kb on + strand at 803.386 kb on - strand at 803.386 kb on - strand at 803.386 kb on - strand at 803.386 kb on - strand at 803.386 kb on - strand at 803.386 kb on - strand at 803.386 kb on - strand at 803.386 kb on - strand at 803.386 kb on - strand at 803.386 kb on - strand at 803.413 kb on + strand at 803.413 kb on + strand at 803.413 kb on + strand at 803.413 kb on + strand at 803.413 kb on + strand at 803.414 kb on - strand at 803.525 kb on + strand at 803.525 kb on + strand at 803.598 kb on - strand at 803.616 kb on - strand, within AO353_03755 at 803.672 kb on + strand, within AO353_03755 at 803.672 kb on + strand, within AO353_03755 at 803.673 kb on - strand, within AO353_03755 at 803.705 kb on + strand, within AO353_03755 at 803.705 kb on + strand, within AO353_03755 at 803.705 kb on + strand, within AO353_03755 at 803.706 kb on - strand, within AO353_03755 at 803.706 kb on - strand, within AO353_03755 at 803.706 kb on - strand, within AO353_03755 at 803.706 kb on - strand, within AO353_03755 at 803.706 kb on - strand, within AO353_03755 at 803.706 kb on - strand, within AO353_03755 at 803.771 kb on + strand, within AO353_03755 at 803.771 kb on + strand, within AO353_03755 at 803.772 kb on - strand, within AO353_03755 at 803.777 kb on + strand, within AO353_03755 at 803.777 kb on + strand, within AO353_03755 at 803.777 kb on + strand, within AO353_03755 at 803.778 kb on - strand, within AO353_03755 at 803.778 kb on - strand, within AO353_03755 at 803.778 kb on - strand, within AO353_03755 at 803.778 kb on - strand, within AO353_03755 at 803.954 kb on + strand at 803.954 kb on + strand at 803.954 kb on + strand at 803.967 kb on + strand at 803.968 kb on - strand at 803.968 kb on - strand at 803.968 kb on - strand at 803.968 kb on - strand at 803.968 kb on - strand at 803.968 kb on - strand at 803.981 kb on - strand at 804.013 kb on + strand at 804.013 kb on + strand at 804.013 kb on + strand at 804.013 kb on + strand at 804.013 kb on + strand at 804.014 kb on - strand at 804.014 kb on - strand at 804.014 kb on - strand at 804.082 kb on + strand, within AO353_03760 at 804.082 kb on + strand, within AO353_03760 at 804.083 kb on - strand, within AO353_03760 at 804.083 kb on - strand, within AO353_03760 at 804.083 kb on - strand, within AO353_03760 at 804.218 kb on + strand, within AO353_03760 at 804.218 kb on + strand, within AO353_03760 at 804.218 kb on + strand, within AO353_03760 at 804.219 kb on - strand, within AO353_03760 at 804.219 kb on - strand, within AO353_03760 at 804.354 kb on + strand at 804.354 kb on + strand at 804.354 kb on + strand at 804.355 kb on - strand at 804.355 kb on - strand at 804.355 kb on - strand at 804.375 kb on + strand at 804.375 kb on + strand at 804.375 kb on + strand at 804.375 kb on + strand at 804.375 kb on + strand at 804.376 kb on - strand at 804.376 kb on - strand at 804.376 kb on - strand at 804.381 kb on + strand at 804.381 kb on + strand at 804.381 kb on + strand at 804.381 kb on + strand at 804.381 kb on + strand at 804.381 kb on + strand at 804.382 kb on - strand at 804.382 kb on - strand at 804.393 kb on + strand at 804.393 kb on + strand at 804.393 kb on + strand at 804.394 kb on - strand at 804.394 kb on - strand at 804.478 kb on + strand at 804.488 kb on + strand at 804.489 kb on - strand at 804.489 kb on - strand at 804.502 kb on + strand at 804.503 kb on - strand at 804.523 kb on + strand at 804.523 kb on + strand at 804.523 kb on + strand at 804.523 kb on + strand at 804.523 kb on + strand at 804.523 kb on + strand at 804.524 kb on - strand at 804.541 kb on + strand at 804.541 kb on + strand at 804.541 kb on + strand at 804.541 kb on + strand at 804.541 kb on + strand at 804.542 kb on - strand at 804.542 kb on - strand at 804.542 kb on - strand at 804.542 kb on - strand at 804.542 kb on - strand at 804.593 kb on + strand at 804.593 kb on + strand at 804.593 kb on + strand at 804.594 kb on - strand at 804.594 kb on - strand at 804.594 kb on - strand at 804.687 kb on - strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.723 kb on - strand, within AO353_03765 at 804.723 kb on - strand, within AO353_03765 at 804.743 kb on + strand, within AO353_03765 at 804.743 kb on + strand, within AO353_03765 at 804.743 kb on + strand, within AO353_03765 at 804.743 kb on + strand, within AO353_03765 at 804.743 kb on + strand, within AO353_03765 at 804.744 kb on - strand, within AO353_03765 at 804.744 kb on - strand, within AO353_03765 at 804.744 kb on - strand, within AO353_03765 at 804.744 kb on - strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.800 kb on + strand, within AO353_03765 at 804.800 kb on + strand, within AO353_03765 at 804.801 kb on - strand, within AO353_03765 at 804.801 kb on - strand, within AO353_03765 at 804.801 kb on - strand, within AO353_03765 at 804.872 kb on + strand, within AO353_03765 at 804.872 kb on + strand, within AO353_03765
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 802,706 + AO353_03750 0.61 +0.5 802,706 + AO353_03750 0.61 +0.4 802,706 + AO353_03750 0.61 -0.0 802,706 + AO353_03750 0.61 +0.6 802,706 + AO353_03750 0.61 +0.6 802,706 + AO353_03750 0.61 -1.0 802,706 + AO353_03750 0.61 -1.0 802,706 + AO353_03750 0.61 -0.5 802,706 + AO353_03750 0.61 +0.4 802,707 - AO353_03750 0.61 -0.7 802,707 - AO353_03750 0.61 +1.8 802,707 - AO353_03750 0.61 -1.1 802,707 - AO353_03750 0.61 -0.5 802,707 - AO353_03750 0.61 -0.0 802,707 - AO353_03750 0.61 +1.6 802,707 - AO353_03750 0.61 -1.4 802,716 + AO353_03750 0.62 -1.9 802,716 + +2.5 802,717 - AO353_03750 0.62 +0.7 802,717 - AO353_03750 0.62 +1.5 802,769 + AO353_03750 0.66 +0.2 802,770 - AO353_03750 0.66 +0.3 802,789 + AO353_03750 0.67 +0.2 802,790 - AO353_03750 0.68 -2.8 802,823 + AO353_03750 0.70 -1.6 802,856 + AO353_03750 0.73 +0.9 802,857 - AO353_03750 0.73 -0.3 803,017 - AO353_03750 0.85 +0.2 803,069 + AO353_03750 0.89 -3.0 803,087 + AO353_03750 0.90 +2.0 803,087 + AO353_03750 0.90 +0.5 803,087 + AO353_03750 0.90 -0.7 803,087 + AO353_03750 0.90 -0.2 803,087 + AO353_03750 0.90 +0.5 803,087 + AO353_03750 0.90 -1.2 803,087 + AO353_03750 0.90 -0.2 803,087 + AO353_03750 0.90 +0.3 803,088 - +0.4 803,088 - +1.1 803,190 - +0.7 803,190 - -1.0 803,220 - -1.1 803,278 + +1.0 803,279 - -1.3 803,338 + -0.0 803,379 + +0.1 803,385 + +0.5 803,385 + +0.3 803,385 + -0.1 803,385 + -0.8 803,385 + +0.9 803,386 - +0.3 803,386 - -1.5 803,386 - +0.3 803,386 - +0.4 803,386 - -0.6 803,386 - -1.2 803,386 - +0.0 803,386 - -1.8 803,386 - -0.5 803,386 - +0.2 803,413 + +0.3 803,413 + -0.5 803,413 + -0.3 803,413 + -0.8 803,413 + -0.8 803,414 - -1.3 803,525 + -1.0 803,525 + +2.1 803,598 - -0.4 803,616 - AO353_03755 0.13 -1.0 803,672 + AO353_03755 0.27 -1.6 803,672 + AO353_03755 0.27 -0.1 803,673 - AO353_03755 0.27 -0.8 803,705 + AO353_03755 0.35 +0.3 803,705 + AO353_03755 0.35 -0.5 803,705 + AO353_03755 0.35 -0.1 803,706 - AO353_03755 0.36 -1.2 803,706 - AO353_03755 0.36 -2.1 803,706 - AO353_03755 0.36 -1.0 803,706 - AO353_03755 0.36 +2.5 803,706 - AO353_03755 0.36 -1.0 803,706 - AO353_03755 0.36 -0.4 803,771 + AO353_03755 0.52 -0.3 803,771 + AO353_03755 0.52 -1.3 803,772 - AO353_03755 0.53 -1.1 803,777 + AO353_03755 0.54 +0.2 803,777 + AO353_03755 0.54 +1.5 803,777 + AO353_03755 0.54 -2.3 803,778 - AO353_03755 0.54 -1.1 803,778 - AO353_03755 0.54 -0.8 803,778 - AO353_03755 0.54 -1.9 803,778 - AO353_03755 0.54 +1.5 803,954 + -1.8 803,954 + -1.9 803,954 + +0.1 803,967 + +0.5 803,968 - -1.1 803,968 - +0.6 803,968 - -0.1 803,968 - -0.5 803,968 - -1.2 803,968 - +0.0 803,981 - -0.7 804,013 + +3.1 804,013 + -1.9 804,013 + +0.9 804,013 + +0.3 804,013 + -0.8 804,014 - -1.3 804,014 - +0.0 804,014 - +0.2 804,082 + AO353_03760 0.29 -0.2 804,082 + AO353_03760 0.29 -1.2 804,083 - AO353_03760 0.29 -1.5 804,083 - AO353_03760 0.29 -1.5 804,083 - AO353_03760 0.29 -0.1 804,218 + AO353_03760 0.66 -2.7 804,218 + AO353_03760 0.66 -1.0 804,218 + AO353_03760 0.66 +0.2 804,219 - AO353_03760 0.67 -1.5 804,219 - AO353_03760 0.67 -0.6 804,354 + -1.0 804,354 + -1.7 804,354 + -0.3 804,355 - -1.8 804,355 - +1.6 804,355 - +0.2 804,375 + -0.6 804,375 + -2.6 804,375 + +0.2 804,375 + +1.6 804,375 + -0.2 804,376 - +0.2 804,376 - +0.3 804,376 - -1.9 804,381 + -1.1 804,381 + -1.0 804,381 + -1.0 804,381 + -2.4 804,381 + -0.3 804,381 + -0.1 804,382 - +0.8 804,382 - -2.2 804,393 + -0.1 804,393 + -1.4 804,393 + +0.3 804,394 - -0.6 804,394 - -0.8 804,478 + -1.3 804,488 + -1.0 804,489 - -0.3 804,489 - -0.3 804,502 + -0.7 804,503 - -0.5 804,523 + +1.3 804,523 + -1.3 804,523 + -0.4 804,523 + -1.2 804,523 + +0.9 804,523 + +2.9 804,524 - -1.4 804,541 + +0.5 804,541 + +1.7 804,541 + -1.0 804,541 + +0.7 804,541 + -0.1 804,542 - +1.1 804,542 - +0.5 804,542 - +0.3 804,542 - -1.8 804,542 - -1.0 804,593 + -0.2 804,593 + +0.7 804,593 + +0.2 804,594 - -0.7 804,594 - -0.7 804,594 - -1.6 804,687 - AO353_03765 0.25 -0.2 804,722 + AO353_03765 0.35 +0.3 804,722 + AO353_03765 0.35 +0.9 804,722 + AO353_03765 0.35 -1.3 804,722 + AO353_03765 0.35 -1.3 804,722 + AO353_03765 0.35 +0.2 804,722 + AO353_03765 0.35 -1.2 804,723 - AO353_03765 0.35 -0.1 804,723 - AO353_03765 0.35 -0.3 804,743 + AO353_03765 0.40 -1.0 804,743 + AO353_03765 0.40 -0.5 804,743 + AO353_03765 0.40 +0.2 804,743 + AO353_03765 0.40 -1.3 804,743 + AO353_03765 0.40 +1.8 804,744 - AO353_03765 0.41 +0.2 804,744 - AO353_03765 0.41 -0.1 804,744 - AO353_03765 0.41 -2.2 804,744 - AO353_03765 0.41 -1.0 804,796 + AO353_03765 0.54 +0.4 804,796 + AO353_03765 0.54 -0.6 804,796 + AO353_03765 0.54 +0.0 804,796 + AO353_03765 0.54 +0.3 804,796 + AO353_03765 0.54 -0.7 804,796 + AO353_03765 0.54 -1.0 804,796 + +0.2 804,796 + AO353_03765 0.54 -0.1 804,796 + AO353_03765 0.54 -0.4 804,796 + AO353_03765 0.54 -0.5 804,796 + AO353_03765 0.54 -0.3 804,796 + AO353_03765 0.54 +0.5 804,796 + AO353_03765 0.54 +0.9 804,796 + AO353_03765 0.54 +0.9 804,796 + AO353_03765 0.54 -1.4 804,796 + AO353_03765 0.54 -0.1 804,797 - AO353_03765 0.55 -2.2 804,797 - AO353_03765 0.55 -1.2 804,797 - AO353_03765 0.55 -1.1 804,797 - AO353_03765 0.55 -1.7 804,797 - AO353_03765 0.55 -0.7 804,797 - AO353_03765 0.55 +1.5 804,797 - AO353_03765 0.55 -0.1 804,797 - AO353_03765 0.55 -0.8 804,797 - AO353_03765 0.55 +0.3 804,797 - AO353_03765 0.55 +0.7 804,797 - AO353_03765 0.55 -0.3 804,797 - AO353_03765 0.55 -0.8 804,797 - AO353_03765 0.55 -0.9 804,798 + AO353_03765 0.55 +2.5 804,798 + AO353_03765 0.55 +0.7 804,798 + AO353_03765 0.55 -0.5 804,798 + AO353_03765 0.55 -0.1 804,798 + AO353_03765 0.55 +1.9 804,798 + AO353_03765 0.55 -2.0 804,798 + AO353_03765 0.55 +1.4 804,799 - AO353_03765 0.55 -0.8 804,799 - AO353_03765 0.55 -0.3 804,799 - AO353_03765 0.55 +0.2 804,799 - AO353_03765 0.55 -0.8 804,799 - AO353_03765 0.55 +0.3 804,799 - AO353_03765 0.55 -0.2 804,800 + AO353_03765 0.55 -1.3 804,800 + AO353_03765 0.55 -0.3 804,801 - AO353_03765 0.56 -0.2 804,801 - AO353_03765 0.56 -0.7 804,801 - AO353_03765 0.56 -0.3 804,872 + AO353_03765 0.75 -0.1 804,872 + AO353_03765 0.75 -1.1
Or see this region's nucleotide sequence