Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03665

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03660 and AO353_03665 overlap by 4 nucleotidesAO353_03665 and AO353_03670 are separated by 96 nucleotides AO353_03660: AO353_03660 - hypothetical protein, at 780,736 to 781,677 _03660 AO353_03665: AO353_03665 - glutathione S-transferase, at 781,674 to 782,306 _03665 AO353_03670: AO353_03670 - ornithine acetyltransferase, at 782,403 to 783,620 _03670 Position (kb) 781 782 783Strain fitness (log2 ratio) -2 -1 0 1 2 3at 780.690 kb on + strandat 780.691 kb on - strandat 780.691 kb on - strandat 780.691 kb on - strandat 780.826 kb on + strandat 780.827 kb on - strandat 780.827 kb on - strandat 781.034 kb on + strand, within AO353_03660at 781.034 kb on + strand, within AO353_03660at 781.034 kb on + strand, within AO353_03660at 781.034 kb on + strand, within AO353_03660at 781.034 kb on + strand, within AO353_03660at 781.035 kb on - strand, within AO353_03660at 781.035 kb on - strand, within AO353_03660at 781.035 kb on - strand, within AO353_03660at 781.035 kb on - strand, within AO353_03660at 781.179 kb on - strand, within AO353_03660at 781.283 kb on + strand, within AO353_03660at 781.340 kb on + strand, within AO353_03660at 781.660 kb on + strandat 781.660 kb on + strandat 781.660 kb on + strandat 781.661 kb on - strandat 781.661 kb on - strandat 781.661 kb on - strandat 781.661 kb on - strandat 781.661 kb on - strandat 781.684 kb on - strandat 781.684 kb on - strandat 781.692 kb on + strandat 781.732 kb on + strandat 781.732 kb on + strandat 781.733 kb on - strandat 781.747 kb on + strand, within AO353_03665at 781.747 kb on + strand, within AO353_03665at 781.747 kb on + strand, within AO353_03665at 781.747 kb on + strand, within AO353_03665at 781.747 kb on + strandat 781.747 kb on + strand, within AO353_03665at 781.747 kb on + strand, within AO353_03665at 781.747 kb on + strand, within AO353_03665at 781.747 kb on + strand, within AO353_03665at 781.747 kb on + strand, within AO353_03665at 781.747 kb on + strand, within AO353_03665at 781.748 kb on - strand, within AO353_03665at 781.748 kb on - strand, within AO353_03665at 781.748 kb on - strand, within AO353_03665at 781.748 kb on - strand, within AO353_03665at 781.748 kb on - strand, within AO353_03665at 781.748 kb on - strand, within AO353_03665at 781.748 kb on - strand, within AO353_03665at 781.748 kb on - strand, within AO353_03665at 781.758 kb on + strand, within AO353_03665at 781.759 kb on - strand, within AO353_03665at 781.759 kb on - strand, within AO353_03665at 781.780 kb on + strand, within AO353_03665at 781.780 kb on + strand, within AO353_03665at 781.780 kb on + strand, within AO353_03665at 781.781 kb on - strand, within AO353_03665at 781.781 kb on - strand, within AO353_03665at 781.781 kb on - strand, within AO353_03665at 781.781 kb on - strand, within AO353_03665at 781.781 kb on - strand, within AO353_03665at 781.781 kb on - strand, within AO353_03665at 781.784 kb on + strand, within AO353_03665at 781.784 kb on + strand, within AO353_03665at 781.784 kb on + strand, within AO353_03665at 781.784 kb on + strand, within AO353_03665at 781.784 kb on + strand, within AO353_03665at 781.784 kb on + strand, within AO353_03665at 781.784 kb on + strand, within AO353_03665at 781.784 kb on + strand, within AO353_03665at 781.785 kb on - strand, within AO353_03665at 781.785 kb on - strand, within AO353_03665at 781.785 kb on - strand, within AO353_03665at 781.785 kb on - strand, within AO353_03665at 781.785 kb on - strand, within AO353_03665at 781.785 kb on - strand, within AO353_03665at 781.785 kb on - strand, within AO353_03665at 781.785 kb on - strand, within AO353_03665at 781.800 kb on + strand, within AO353_03665at 781.800 kb on + strand, within AO353_03665at 781.800 kb on + strand, within AO353_03665at 781.800 kb on + strand, within AO353_03665at 781.801 kb on - strand, within AO353_03665at 781.801 kb on - strand, within AO353_03665at 781.801 kb on - strand, within AO353_03665at 781.801 kb on - strand, within AO353_03665at 781.801 kb on - strand, within AO353_03665at 781.801 kb on - strand, within AO353_03665at 781.801 kb on - strand, within AO353_03665at 781.801 kb on - strand, within AO353_03665at 781.830 kb on + strand, within AO353_03665at 781.831 kb on - strand, within AO353_03665at 781.831 kb on - strand, within AO353_03665at 781.976 kb on + strand, within AO353_03665at 781.977 kb on - strand, within AO353_03665at 781.977 kb on - strand, within AO353_03665at 782.087 kb on - strand, within AO353_03665at 782.087 kb on - strand, within AO353_03665at 782.218 kb on + strand, within AO353_03665at 782.218 kb on + strand, within AO353_03665at 782.218 kb on + strand, within AO353_03665at 782.218 kb on + strand, within AO353_03665at 782.219 kb on - strand, within AO353_03665at 782.219 kb on - strand, within AO353_03665at 782.272 kb on + strandat 782.272 kb on + strandat 782.272 kb on + strandat 782.272 kb on + strandat 782.273 kb on - strandat 782.273 kb on - strandat 782.299 kb on + strandat 782.299 kb on + strandat 782.299 kb on + strandat 782.299 kb on + strandat 782.299 kb on + strandat 782.299 kb on + strandat 782.300 kb on - strandat 782.300 kb on - strandat 782.300 kb on - strandat 782.300 kb on - strandat 782.300 kb on - strandat 782.376 kb on - strandat 782.404 kb on + strandat 782.404 kb on + strandat 782.404 kb on + strandat 782.404 kb on + strandat 782.404 kb on + strandat 782.404 kb on + strandat 782.404 kb on + strandat 782.404 kb on + strandat 782.404 kb on + strandat 782.404 kb on + strandat 782.405 kb on - strandat 782.405 kb on - strandat 782.405 kb on - strandat 782.434 kb on + strandat 782.434 kb on + strandat 782.434 kb on + strandat 782.434 kb on + strandat 782.434 kb on + strandat 782.435 kb on - strandat 782.435 kb on - strandat 782.435 kb on - strandat 782.435 kb on - strandat 782.435 kb on - strandat 782.523 kb on + strandat 782.524 kb on - strandat 782.548 kb on + strand, within AO353_03670at 782.548 kb on + strand, within AO353_03670at 782.548 kb on + strand, within AO353_03670at 782.548 kb on + strand, within AO353_03670at 782.549 kb on - strand, within AO353_03670at 782.549 kb on - strand, within AO353_03670at 782.549 kb on - strand, within AO353_03670at 782.549 kb on - strand, within AO353_03670at 782.549 kb on - strand, within AO353_03670at 782.722 kb on + strand, within AO353_03670at 783.044 kb on - strand, within AO353_03670at 783.283 kb on + strand, within AO353_03670

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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780,690 + -0.5
780,691 - -0.1
780,691 - -1.8
780,691 - +0.5
780,826 + -0.6
780,827 - -0.1
780,827 - -1.0
781,034 + AO353_03660 0.32 -0.9
781,034 + AO353_03660 0.32 -0.5
781,034 + AO353_03660 0.32 -0.4
781,034 + AO353_03660 0.32 -0.7
781,034 + AO353_03660 0.32 -0.6
781,035 - AO353_03660 0.32 -0.7
781,035 - AO353_03660 0.32 -0.7
781,035 - AO353_03660 0.32 -1.8
781,035 - AO353_03660 0.32 +0.5
781,179 - AO353_03660 0.47 +1.3
781,283 + AO353_03660 0.58 -1.8
781,340 + AO353_03660 0.64 +0.1
781,660 + -1.1
781,660 + -1.5
781,660 + -2.3
781,661 - -1.1
781,661 - -0.1
781,661 - -0.1
781,661 - +1.8
781,661 - -0.4
781,684 - -1.5
781,684 - +0.6
781,692 + +0.6
781,732 + -0.2
781,732 + -0.0
781,733 - -0.9
781,747 + AO353_03665 0.12 -1.4
781,747 + AO353_03665 0.12 +0.6
781,747 + AO353_03665 0.12 -0.1
781,747 + AO353_03665 0.12 +1.3
781,747 + +1.5
781,747 + AO353_03665 0.12 +0.1
781,747 + AO353_03665 0.12 -2.6
781,747 + AO353_03665 0.12 +1.9
781,747 + AO353_03665 0.12 -1.2
781,747 + AO353_03665 0.12 +0.7
781,747 + AO353_03665 0.12 -1.8
781,748 - AO353_03665 0.12 +0.5
781,748 - AO353_03665 0.12 -0.5
781,748 - AO353_03665 0.12 -1.2
781,748 - AO353_03665 0.12 +0.0
781,748 - AO353_03665 0.12 -0.5
781,748 - AO353_03665 0.12 -1.5
781,748 - AO353_03665 0.12 +0.1
781,748 - AO353_03665 0.12 -1.2
781,758 + AO353_03665 0.13 -0.3
781,759 - AO353_03665 0.13 -0.4
781,759 - AO353_03665 0.13 -2.5
781,780 + AO353_03665 0.17 +1.8
781,780 + AO353_03665 0.17 -0.7
781,780 + AO353_03665 0.17 +0.5
781,781 - AO353_03665 0.17 +0.7
781,781 - AO353_03665 0.17 +0.6
781,781 - AO353_03665 0.17 -0.4
781,781 - AO353_03665 0.17 +0.6
781,781 - AO353_03665 0.17 +0.1
781,781 - AO353_03665 0.17 -1.1
781,784 + AO353_03665 0.17 -0.0
781,784 + AO353_03665 0.17 -0.4
781,784 + AO353_03665 0.17 -0.0
781,784 + AO353_03665 0.17 +1.5
781,784 + AO353_03665 0.17 +0.7
781,784 + AO353_03665 0.17 -0.5
781,784 + AO353_03665 0.17 -1.1
781,784 + AO353_03665 0.17 +1.2
781,785 - AO353_03665 0.18 +0.1
781,785 - AO353_03665 0.18 +0.3
781,785 - AO353_03665 0.18 +1.3
781,785 - AO353_03665 0.18 +0.5
781,785 - AO353_03665 0.18 +1.5
781,785 - AO353_03665 0.18 -0.7
781,785 - AO353_03665 0.18 +1.3
781,785 - AO353_03665 0.18 -1.1
781,800 + AO353_03665 0.20 +0.1
781,800 + AO353_03665 0.20 +1.2
781,800 + AO353_03665 0.20 -0.1
781,800 + AO353_03665 0.20 +0.4
781,801 - AO353_03665 0.20 +0.4
781,801 - AO353_03665 0.20 -1.7
781,801 - AO353_03665 0.20 -0.5
781,801 - AO353_03665 0.20 -1.0
781,801 - AO353_03665 0.20 +1.1
781,801 - AO353_03665 0.20 +1.7
781,801 - AO353_03665 0.20 +0.5
781,801 - AO353_03665 0.20 -0.5
781,830 + AO353_03665 0.25 -1.8
781,831 - AO353_03665 0.25 +1.4
781,831 - AO353_03665 0.25 -0.7
781,976 + AO353_03665 0.48 +1.5
781,977 - AO353_03665 0.48 -0.9
781,977 - AO353_03665 0.48 -0.7
782,087 - AO353_03665 0.65 +1.5
782,087 - AO353_03665 0.65 +0.2
782,218 + AO353_03665 0.86 +1.9
782,218 + AO353_03665 0.86 +0.9
782,218 + AO353_03665 0.86 +1.6
782,218 + AO353_03665 0.86 +2.0
782,219 - AO353_03665 0.86 -1.2
782,219 - AO353_03665 0.86 -0.5
782,272 + -1.0
782,272 + -1.4
782,272 + +1.9
782,272 + +0.5
782,273 - +1.7
782,273 - +1.6
782,299 + +1.8
782,299 + -1.2
782,299 + -1.2
782,299 + -1.5
782,299 + -1.2
782,299 + +0.0
782,300 - -1.0
782,300 - -0.7
782,300 - -0.4
782,300 - -1.5
782,300 - +0.8
782,376 - -1.5
782,404 + -0.7
782,404 + +1.5
782,404 + +0.1
782,404 + +3.2
782,404 + +0.1
782,404 + -0.7
782,404 + -1.9
782,404 + +1.7
782,404 + -1.2
782,404 + -0.5
782,405 - -0.2
782,405 - -1.5
782,405 - -1.4
782,434 + +1.6
782,434 + +0.5
782,434 + +2.5
782,434 + +1.5
782,434 + +0.1
782,435 - +1.3
782,435 - +3.0
782,435 - +0.6
782,435 - +0.4
782,435 - +0.6
782,523 + +1.8
782,524 - +0.8
782,548 + AO353_03670 0.12 -0.1
782,548 + AO353_03670 0.12 +2.2
782,548 + AO353_03670 0.12 +0.9
782,548 + AO353_03670 0.12 +1.9
782,549 - AO353_03670 0.12 +0.1
782,549 - AO353_03670 0.12 +1.0
782,549 - AO353_03670 0.12 +0.9
782,549 - AO353_03670 0.12 +1.7
782,549 - AO353_03670 0.12 +2.5
782,722 + AO353_03670 0.26 +0.9
783,044 - AO353_03670 0.53 +1.7
783,283 + AO353_03670 0.72 +2.8

Or see this region's nucleotide sequence