Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03405 and AO353_03410 overlap by 11 nucleotides AO353_03410 and AO353_03415 are separated by 206 nucleotides
AO353_03405: AO353_03405 - histidine kinase, at 725,463 to 726,926
_03405
AO353_03410: AO353_03410 - chemotaxis protein CheY, at 726,916 to 727,647
_03410
AO353_03415: AO353_03415 - glucokinase, at 727,854 to 728,804
_03415
Position (kb)
726
727
728 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 726.113 kb on + strand, within AO353_03405 at 726.114 kb on - strand, within AO353_03405 at 726.251 kb on + strand, within AO353_03405 at 726.329 kb on + strand, within AO353_03405 at 726.329 kb on + strand, within AO353_03405 at 726.329 kb on + strand, within AO353_03405 at 726.329 kb on + strand, within AO353_03405 at 726.329 kb on + strand, within AO353_03405 at 726.331 kb on + strand, within AO353_03405 at 726.332 kb on - strand, within AO353_03405 at 726.358 kb on + strand, within AO353_03405 at 726.358 kb on + strand, within AO353_03405 at 726.358 kb on + strand, within AO353_03405 at 726.358 kb on + strand, within AO353_03405 at 726.359 kb on - strand, within AO353_03405 at 726.359 kb on - strand, within AO353_03405 at 726.359 kb on - strand, within AO353_03405 at 726.359 kb on - strand, within AO353_03405 at 726.359 kb on - strand, within AO353_03405 at 726.434 kb on - strand, within AO353_03405 at 726.434 kb on - strand, within AO353_03405 at 726.521 kb on + strand, within AO353_03405 at 726.521 kb on + strand, within AO353_03405 at 726.522 kb on - strand, within AO353_03405 at 726.522 kb on - strand, within AO353_03405 at 726.522 kb on - strand, within AO353_03405 at 726.522 kb on - strand, within AO353_03405 at 726.522 kb on - strand, within AO353_03405 at 726.522 kb on - strand, within AO353_03405 at 726.715 kb on + strand, within AO353_03405 at 726.715 kb on + strand, within AO353_03405 at 726.715 kb on + strand, within AO353_03405 at 726.715 kb on + strand, within AO353_03405 at 726.715 kb on + strand, within AO353_03405 at 726.715 kb on + strand, within AO353_03405 at 726.937 kb on + strand at 726.937 kb on + strand at 726.938 kb on - strand at 726.938 kb on - strand at 726.938 kb on - strand at 727.280 kb on - strand, within AO353_03410 at 727.280 kb on - strand, within AO353_03410 at 727.334 kb on + strand, within AO353_03410 at 727.335 kb on - strand, within AO353_03410 at 727.577 kb on + strand at 727.577 kb on + strand at 727.578 kb on - strand at 727.578 kb on - strand at 727.578 kb on - strand at 727.578 kb on - strand at 727.578 kb on - strand at 727.578 kb on - strand at 727.597 kb on + strand at 727.597 kb on + strand at 727.667 kb on + strand at 727.667 kb on + strand at 727.667 kb on + strand at 727.667 kb on + strand at 727.667 kb on + strand at 727.683 kb on + strand at 727.683 kb on + strand at 727.684 kb on - strand at 727.684 kb on - strand at 727.852 kb on + strand at 727.852 kb on + strand at 727.852 kb on + strand at 727.852 kb on + strand at 727.897 kb on + strand at 727.898 kb on - strand at 727.936 kb on + strand at 727.936 kb on + strand at 727.936 kb on + strand at 727.937 kb on - strand at 727.937 kb on - strand at 727.937 kb on - strand at 727.937 kb on - strand at 727.937 kb on - strand at 727.937 kb on - strand at 727.937 kb on - strand at 728.029 kb on + strand at 728.029 kb on + strand, within AO353_03415 at 728.029 kb on + strand, within AO353_03415 at 728.029 kb on + strand, within AO353_03415 at 728.029 kb on + strand, within AO353_03415 at 728.029 kb on + strand, within AO353_03415 at 728.029 kb on + strand, within AO353_03415 at 728.029 kb on + strand, within AO353_03415 at 728.030 kb on - strand, within AO353_03415 at 728.030 kb on - strand, within AO353_03415 at 728.030 kb on - strand, within AO353_03415 at 728.030 kb on - strand, within AO353_03415 at 728.030 kb on - strand, within AO353_03415 at 728.030 kb on - strand, within AO353_03415 at 728.030 kb on - strand, within AO353_03415 at 728.207 kb on - strand, within AO353_03415 at 728.269 kb on + strand, within AO353_03415 at 728.269 kb on + strand, within AO353_03415 at 728.270 kb on - strand, within AO353_03415 at 728.270 kb on - strand, within AO353_03415 at 728.270 kb on - strand, within AO353_03415 at 728.270 kb on - strand, within AO353_03415 at 728.582 kb on + strand, within AO353_03415 at 728.582 kb on + strand, within AO353_03415
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 726,113 + AO353_03405 0.44 +1.0 726,114 - AO353_03405 0.44 +1.5 726,251 + AO353_03405 0.54 -0.5 726,329 + AO353_03405 0.59 -1.5 726,329 + AO353_03405 0.59 -0.5 726,329 + AO353_03405 0.59 -0.4 726,329 + AO353_03405 0.59 +2.5 726,329 + AO353_03405 0.59 -0.7 726,331 + AO353_03405 0.59 -1.4 726,332 - AO353_03405 0.59 +0.5 726,358 + AO353_03405 0.61 -0.7 726,358 + AO353_03405 0.61 -1.7 726,358 + AO353_03405 0.61 +0.9 726,358 + AO353_03405 0.61 +0.6 726,359 - AO353_03405 0.61 -0.0 726,359 - AO353_03405 0.61 +1.3 726,359 - AO353_03405 0.61 +0.6 726,359 - AO353_03405 0.61 -0.4 726,359 - AO353_03405 0.61 +0.5 726,434 - AO353_03405 0.66 +0.9 726,434 - AO353_03405 0.66 -0.3 726,521 + AO353_03405 0.72 -1.4 726,521 + AO353_03405 0.72 +0.2 726,522 - AO353_03405 0.72 -1.1 726,522 - AO353_03405 0.72 -1.1 726,522 - AO353_03405 0.72 -1.0 726,522 - AO353_03405 0.72 -1.1 726,522 - AO353_03405 0.72 +0.9 726,522 - AO353_03405 0.72 -0.1 726,715 + AO353_03405 0.86 -1.2 726,715 + AO353_03405 0.86 +2.1 726,715 + AO353_03405 0.86 -0.1 726,715 + AO353_03405 0.86 -0.9 726,715 + AO353_03405 0.86 -0.3 726,715 + AO353_03405 0.86 -0.5 726,937 + -0.3 726,937 + -0.5 726,938 - -0.1 726,938 - -0.9 726,938 - +0.9 727,280 - AO353_03410 0.50 -1.7 727,280 - AO353_03410 0.50 -0.5 727,334 + AO353_03410 0.57 -2.2 727,335 - AO353_03410 0.57 -0.5 727,577 + -0.1 727,577 + -0.2 727,578 - +1.2 727,578 - -0.0 727,578 - +0.9 727,578 - -0.6 727,578 - -0.3 727,578 - -1.2 727,597 + -1.1 727,597 + -0.3 727,667 + -1.1 727,667 + +0.5 727,667 + -0.8 727,667 + +0.1 727,667 + +1.1 727,683 + +0.1 727,683 + -0.8 727,684 - -0.3 727,684 - -0.9 727,852 + -0.9 727,852 + -0.7 727,852 + +0.0 727,852 + -1.9 727,897 + +1.9 727,898 - +1.2 727,936 + +1.4 727,936 + -1.0 727,936 + +0.3 727,937 - -2.4 727,937 - +1.0 727,937 - +2.5 727,937 - -0.7 727,937 - +1.5 727,937 - -0.1 727,937 - -0.7 728,029 + +2.5 728,029 + AO353_03415 0.18 -0.1 728,029 + AO353_03415 0.18 -0.3 728,029 + AO353_03415 0.18 +0.9 728,029 + AO353_03415 0.18 +1.2 728,029 + AO353_03415 0.18 -0.8 728,029 + AO353_03415 0.18 -0.2 728,029 + AO353_03415 0.18 -0.5 728,030 - AO353_03415 0.19 -0.4 728,030 - AO353_03415 0.19 +0.8 728,030 - AO353_03415 0.19 -0.7 728,030 - AO353_03415 0.19 -1.8 728,030 - AO353_03415 0.19 -1.2 728,030 - AO353_03415 0.19 +0.1 728,030 - AO353_03415 0.19 -0.4 728,207 - AO353_03415 0.37 -0.3 728,269 + AO353_03415 0.44 +1.7 728,269 + AO353_03415 0.44 +1.2 728,270 - AO353_03415 0.44 -1.1 728,270 - AO353_03415 0.44 +0.8 728,270 - AO353_03415 0.44 +0.7 728,270 - AO353_03415 0.44 +0.1 728,582 + AO353_03415 0.77 +1.2 728,582 + AO353_03415 0.77 +1.9
Or see this region's nucleotide sequence