Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03275 and AO353_03280 are separated by 99 nucleotides AO353_03280 and AO353_03285 are separated by 287 nucleotides AO353_03285 and AO353_03290 are separated by 20 nucleotides
AO353_03275: AO353_03275 - LysR family transcriptional regulator, at 699,036 to 699,914
_03275
AO353_03280: AO353_03280 - glutathione S-transferase, at 700,014 to 700,622
_03280
AO353_03285: AO353_03285 - GCN5 family acetyltransferase, at 700,910 to 701,326
_03285
AO353_03290: AO353_03290 - peptide deformylase, at 701,347 to 701,886
_03290
Position (kb) 700
701 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 699.428 kb on + strand, within AO353_03275 at 699.428 kb on + strand, within AO353_03275 at 699.428 kb on + strand, within AO353_03275 at 699.555 kb on - strand, within AO353_03275 at 699.562 kb on + strand, within AO353_03275 at 699.857 kb on + strand at 699.857 kb on + strand at 699.857 kb on + strand at 699.858 kb on - strand at 699.920 kb on + strand at 699.920 kb on + strand at 699.920 kb on + strand at 699.921 kb on - strand at 699.921 kb on - strand at 699.921 kb on - strand at 699.921 kb on - strand at 699.921 kb on - strand at 699.921 kb on - strand at 699.921 kb on - strand at 699.921 kb on - strand at 699.924 kb on + strand at 699.924 kb on + strand at 699.925 kb on - strand at 699.925 kb on - strand at 699.951 kb on + strand at 699.952 kb on - strand at 699.976 kb on + strand at 699.976 kb on + strand at 699.976 kb on + strand at 699.977 kb on - strand at 699.977 kb on - strand at 699.977 kb on - strand at 699.977 kb on - strand at 700.023 kb on + strand at 700.023 kb on + strand at 700.023 kb on + strand at 700.023 kb on + strand at 700.024 kb on - strand at 700.164 kb on + strand, within AO353_03280 at 700.164 kb on + strand, within AO353_03280 at 700.164 kb on + strand, within AO353_03280 at 700.164 kb on + strand, within AO353_03280 at 700.164 kb on + strand, within AO353_03280 at 700.164 kb on + strand, within AO353_03280 at 700.164 kb on + strand at 700.165 kb on - strand, within AO353_03280 at 700.165 kb on - strand, within AO353_03280 at 700.165 kb on - strand, within AO353_03280 at 700.165 kb on - strand, within AO353_03280 at 700.165 kb on - strand, within AO353_03280 at 700.165 kb on - strand, within AO353_03280 at 700.165 kb on - strand, within AO353_03280 at 700.165 kb on - strand, within AO353_03280 at 700.227 kb on + strand, within AO353_03280 at 700.227 kb on + strand, within AO353_03280 at 700.227 kb on + strand, within AO353_03280 at 700.227 kb on + strand, within AO353_03280 at 700.228 kb on - strand, within AO353_03280 at 700.446 kb on + strand, within AO353_03280 at 700.446 kb on + strand, within AO353_03280 at 700.446 kb on + strand, within AO353_03280 at 700.446 kb on + strand, within AO353_03280 at 700.446 kb on + strand, within AO353_03280 at 700.447 kb on - strand, within AO353_03280 at 700.447 kb on - strand, within AO353_03280 at 700.447 kb on - strand, within AO353_03280 at 700.447 kb on - strand, within AO353_03280 at 700.447 kb on - strand, within AO353_03280 at 700.482 kb on + strand, within AO353_03280 at 700.482 kb on + strand, within AO353_03280 at 700.482 kb on + strand, within AO353_03280 at 700.482 kb on + strand, within AO353_03280 at 700.482 kb on + strand, within AO353_03280 at 700.482 kb on + strand, within AO353_03280 at 700.495 kb on + strand, within AO353_03280 at 700.495 kb on + strand, within AO353_03280 at 700.496 kb on - strand, within AO353_03280 at 700.646 kb on + strand at 700.646 kb on + strand at 700.646 kb on + strand at 700.647 kb on - strand at 700.647 kb on - strand at 700.647 kb on - strand at 700.647 kb on - strand at 700.647 kb on - strand at 700.831 kb on + strand at 700.831 kb on + strand at 700.831 kb on + strand at 700.831 kb on + strand at 700.832 kb on - strand at 700.843 kb on + strand at 700.843 kb on + strand at 700.843 kb on + strand at 700.843 kb on + strand at 700.844 kb on - strand at 700.844 kb on - strand at 700.844 kb on - strand at 700.844 kb on - strand at 700.844 kb on - strand at 700.844 kb on - strand at 700.844 kb on - strand at 700.844 kb on - strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.846 kb on - strand at 700.846 kb on - strand at 700.846 kb on - strand at 700.846 kb on - strand at 700.846 kb on - strand at 700.846 kb on - strand at 700.846 kb on - strand at 700.846 kb on - strand at 700.846 kb on - strand at 700.846 kb on - strand at 700.846 kb on - strand at 700.846 kb on - strand at 700.851 kb on + strand at 700.851 kb on + strand at 700.852 kb on - strand at 700.852 kb on - strand at 700.873 kb on + strand at 700.873 kb on + strand at 700.873 kb on + strand at 700.873 kb on + strand at 700.873 kb on + strand at 700.874 kb on - strand at 700.874 kb on - strand at 700.874 kb on - strand at 700.874 kb on - strand at 700.874 kb on - strand at 700.874 kb on - strand at 700.874 kb on - strand at 700.874 kb on - strand at 700.876 kb on - strand at 700.876 kb on - strand at 700.876 kb on - strand at 700.876 kb on - strand at 700.876 kb on - strand at 700.878 kb on + strand at 700.878 kb on + strand at 700.878 kb on + strand at 700.879 kb on - strand at 700.925 kb on + strand at 700.926 kb on - strand at 700.926 kb on - strand at 700.926 kb on - strand at 700.971 kb on - strand, within AO353_03285 at 701.094 kb on + strand, within AO353_03285 at 701.095 kb on - strand, within AO353_03285 at 701.095 kb on - strand, within AO353_03285 at 701.095 kb on - strand, within AO353_03285 at 701.125 kb on + strand, within AO353_03285 at 701.125 kb on + strand, within AO353_03285 at 701.126 kb on - strand, within AO353_03285 at 701.126 kb on - strand, within AO353_03285 at 701.126 kb on - strand, within AO353_03285 at 701.126 kb on - strand, within AO353_03285 at 701.126 kb on - strand, within AO353_03285 at 701.126 kb on - strand, within AO353_03285 at 701.210 kb on + strand, within AO353_03285 at 701.211 kb on - strand, within AO353_03285 at 701.211 kb on - strand, within AO353_03285 at 701.249 kb on + strand, within AO353_03285 at 701.249 kb on + strand, within AO353_03285 at 701.250 kb on - strand, within AO353_03285 at 701.276 kb on + strand, within AO353_03285 at 701.276 kb on + strand, within AO353_03285 at 701.276 kb on + strand, within AO353_03285 at 701.278 kb on + strand, within AO353_03285 at 701.278 kb on + strand, within AO353_03285 at 701.279 kb on - strand, within AO353_03285 at 701.324 kb on + strand at 701.325 kb on - strand at 701.339 kb on + strand at 701.349 kb on - strand at 701.349 kb on - strand at 701.349 kb on - strand at 701.349 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 699,428 + AO353_03275 0.45 +0.3 699,428 + AO353_03275 0.45 -1.6 699,428 + AO353_03275 0.45 +1.1 699,555 - AO353_03275 0.59 -1.3 699,562 + AO353_03275 0.60 +0.4 699,857 + +0.7 699,857 + +0.9 699,857 + -1.5 699,858 - -2.7 699,920 + +0.5 699,920 + -0.2 699,920 + +1.5 699,921 - +0.1 699,921 - -1.1 699,921 - -0.5 699,921 - +1.0 699,921 - +0.5 699,921 - -0.3 699,921 - +0.8 699,921 - -1.5 699,924 + +2.5 699,924 + -0.3 699,925 - +0.6 699,925 - -1.4 699,951 + -0.5 699,952 - +0.5 699,976 + -0.3 699,976 + +3.2 699,976 + +0.3 699,977 - +1.7 699,977 - +0.9 699,977 - -0.1 699,977 - +0.6 700,023 + -0.1 700,023 + -1.9 700,023 + -0.2 700,023 + -0.3 700,024 - -0.9 700,164 + AO353_03280 0.25 -1.0 700,164 + AO353_03280 0.25 -0.4 700,164 + AO353_03280 0.25 +0.7 700,164 + AO353_03280 0.25 +0.1 700,164 + AO353_03280 0.25 +0.1 700,164 + AO353_03280 0.25 +0.1 700,164 + +1.7 700,165 - AO353_03280 0.25 +2.5 700,165 - AO353_03280 0.25 -2.1 700,165 - AO353_03280 0.25 -0.1 700,165 - AO353_03280 0.25 -0.3 700,165 - AO353_03280 0.25 -0.5 700,165 - AO353_03280 0.25 -0.7 700,165 - AO353_03280 0.25 -0.1 700,165 - AO353_03280 0.25 +1.4 700,227 + AO353_03280 0.35 +0.1 700,227 + AO353_03280 0.35 -1.1 700,227 + AO353_03280 0.35 -0.4 700,227 + AO353_03280 0.35 -1.0 700,228 - AO353_03280 0.35 +1.0 700,446 + AO353_03280 0.71 -0.1 700,446 + AO353_03280 0.71 +0.3 700,446 + AO353_03280 0.71 -1.3 700,446 + AO353_03280 0.71 +0.9 700,446 + AO353_03280 0.71 +0.2 700,447 - AO353_03280 0.71 +1.3 700,447 - AO353_03280 0.71 +0.6 700,447 - AO353_03280 0.71 +0.3 700,447 - AO353_03280 0.71 +0.2 700,447 - AO353_03280 0.71 -0.5 700,482 + AO353_03280 0.77 +1.2 700,482 + AO353_03280 0.77 -0.3 700,482 + AO353_03280 0.77 -0.3 700,482 + AO353_03280 0.77 -1.8 700,482 + AO353_03280 0.77 -1.1 700,482 + AO353_03280 0.77 -1.9 700,495 + AO353_03280 0.79 -0.5 700,495 + AO353_03280 0.79 +0.5 700,496 - AO353_03280 0.79 -0.1 700,646 + -0.1 700,646 + -0.1 700,646 + -0.6 700,647 - -0.3 700,647 - +0.9 700,647 - -0.0 700,647 - +1.2 700,647 - -1.1 700,831 + -1.2 700,831 + +0.3 700,831 + -1.3 700,831 + -0.3 700,832 - -0.5 700,843 + +1.1 700,843 + -0.7 700,843 + -0.7 700,843 + +0.1 700,844 - -1.4 700,844 - +2.0 700,844 - -0.4 700,844 - -0.4 700,844 - +2.1 700,844 - +1.5 700,844 - -0.2 700,844 - -0.7 700,845 + -1.0 700,845 + +0.7 700,845 + -1.8 700,845 + +0.1 700,845 + -0.1 700,845 + -0.5 700,845 + -0.5 700,845 + -0.2 700,845 + +0.2 700,845 + +0.1 700,845 + -0.7 700,845 + -0.1 700,845 + +0.3 700,845 + +0.3 700,845 + -1.1 700,845 + -3.1 700,845 + +0.9 700,845 + -1.3 700,846 - -0.5 700,846 - -0.7 700,846 - +0.5 700,846 - -0.3 700,846 - +0.6 700,846 - -1.1 700,846 - +0.7 700,846 - +0.1 700,846 - +0.1 700,846 - +0.6 700,846 - -0.1 700,846 - +1.7 700,851 + -1.4 700,851 + -0.6 700,852 - +1.1 700,852 - +0.5 700,873 + -1.1 700,873 + -0.4 700,873 + -0.4 700,873 + +0.5 700,873 + -1.5 700,874 - +0.3 700,874 - -0.3 700,874 - -0.5 700,874 - +0.6 700,874 - -0.1 700,874 - +1.3 700,874 - -1.6 700,874 - -0.1 700,876 - +0.5 700,876 - -1.2 700,876 - +1.7 700,876 - -0.1 700,876 - -0.3 700,878 + -0.5 700,878 + -0.5 700,878 + -0.8 700,879 - -1.6 700,925 + +0.4 700,926 - -1.8 700,926 - -0.3 700,926 - -0.6 700,971 - AO353_03285 0.15 -1.1 701,094 + AO353_03285 0.44 -0.9 701,095 - AO353_03285 0.44 +0.9 701,095 - AO353_03285 0.44 +0.5 701,095 - AO353_03285 0.44 +0.6 701,125 + AO353_03285 0.52 -2.2 701,125 + AO353_03285 0.52 +1.0 701,126 - AO353_03285 0.52 +1.1 701,126 - AO353_03285 0.52 +0.1 701,126 - AO353_03285 0.52 +1.2 701,126 - AO353_03285 0.52 -1.7 701,126 - AO353_03285 0.52 -1.2 701,126 - AO353_03285 0.52 -2.6 701,210 + AO353_03285 0.72 +0.1 701,211 - AO353_03285 0.72 +0.6 701,211 - AO353_03285 0.72 -2.2 701,249 + AO353_03285 0.81 +1.5 701,249 + AO353_03285 0.81 +0.1 701,250 - AO353_03285 0.82 -0.4 701,276 + AO353_03285 0.88 -0.7 701,276 + AO353_03285 0.88 +0.0 701,276 + AO353_03285 0.88 +0.2 701,278 + AO353_03285 0.88 +1.1 701,278 + AO353_03285 0.88 +2.0 701,279 - AO353_03285 0.88 +0.5 701,324 + -0.3 701,325 - -0.7 701,339 + -1.3 701,349 - -1.2 701,349 - +1.0 701,349 - +0.0 701,349 - -0.5
Or see this region's nucleotide sequence