Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03005 and AO353_03010 are separated by 128 nucleotides AO353_03010 and AO353_03015 overlap by 1 nucleotides
AO353_03005: AO353_03005 - succinylarginine dihydrolase, at 636,583 to 637,929
_03005
AO353_03010: AO353_03010 - succinylglutamate-semialdehyde dehydrogenase, at 638,058 to 639,521
_03010
AO353_03015: AO353_03015 - arginine N-succinyltransferase, at 639,521 to 640,546
_03015
Position (kb) 638
639
640 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 637.139 kb on + strand, within AO353_03005 at 637.139 kb on + strand, within AO353_03005 at 637.140 kb on - strand, within AO353_03005 at 637.298 kb on + strand, within AO353_03005 at 637.524 kb on - strand, within AO353_03005 at 637.524 kb on - strand, within AO353_03005 at 637.573 kb on - strand, within AO353_03005 at 637.862 kb on + strand at 637.877 kb on + strand at 637.877 kb on + strand at 637.877 kb on + strand at 637.877 kb on + strand at 637.881 kb on + strand at 637.897 kb on + strand at 637.897 kb on + strand at 637.919 kb on + strand at 637.919 kb on + strand at 637.919 kb on + strand at 637.919 kb on + strand at 637.920 kb on - strand at 637.920 kb on - strand at 637.920 kb on - strand at 637.957 kb on + strand at 637.957 kb on + strand at 637.957 kb on + strand at 637.958 kb on - strand at 637.958 kb on - strand at 637.958 kb on - strand at 637.959 kb on + strand at 637.960 kb on - strand at 637.960 kb on - strand at 637.960 kb on - strand at 637.960 kb on - strand at 637.960 kb on - strand at 638.007 kb on + strand at 638.007 kb on + strand at 638.007 kb on + strand at 638.007 kb on + strand at 638.007 kb on + strand at 638.007 kb on + strand at 638.008 kb on - strand at 638.008 kb on - strand at 638.008 kb on - strand at 638.016 kb on + strand at 638.016 kb on + strand at 638.016 kb on + strand at 638.016 kb on + strand at 638.017 kb on - strand at 638.017 kb on - strand at 638.017 kb on - strand at 638.030 kb on - strand at 638.030 kb on - strand at 638.030 kb on - strand at 638.037 kb on + strand at 638.037 kb on + strand at 638.037 kb on + strand at 638.037 kb on + strand at 638.037 kb on + strand at 638.037 kb on + strand at 638.037 kb on + strand at 638.037 kb on + strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.059 kb on + strand at 638.059 kb on + strand at 638.059 kb on + strand at 638.059 kb on + strand at 638.059 kb on + strand at 638.060 kb on - strand at 638.060 kb on - strand at 638.060 kb on - strand at 638.060 kb on - strand at 638.060 kb on - strand at 638.138 kb on - strand at 638.149 kb on + strand at 638.149 kb on + strand at 638.149 kb on + strand at 638.150 kb on - strand at 638.150 kb on - strand at 638.152 kb on + strand at 638.152 kb on + strand at 638.153 kb on - strand at 638.153 kb on - strand at 638.317 kb on + strand, within AO353_03010 at 638.723 kb on + strand, within AO353_03010 at 638.724 kb on - strand, within AO353_03010 at 638.731 kb on + strand, within AO353_03010 at 638.732 kb on - strand, within AO353_03010 at 638.732 kb on - strand, within AO353_03010 at 638.732 kb on - strand, within AO353_03010 at 638.928 kb on + strand, within AO353_03010 at 638.928 kb on + strand, within AO353_03010 at 638.929 kb on - strand, within AO353_03010 at 638.929 kb on - strand, within AO353_03010 at 638.929 kb on - strand, within AO353_03010 at 639.088 kb on + strand, within AO353_03010 at 639.088 kb on + strand, within AO353_03010 at 639.088 kb on + strand, within AO353_03010 at 639.089 kb on - strand, within AO353_03010 at 639.089 kb on - strand, within AO353_03010 at 639.089 kb on - strand, within AO353_03010 at 639.200 kb on + strand, within AO353_03010 at 639.201 kb on - strand, within AO353_03010 at 639.201 kb on - strand, within AO353_03010 at 639.201 kb on - strand, within AO353_03010 at 639.201 kb on - strand, within AO353_03010 at 639.201 kb on - strand, within AO353_03010 at 639.508 kb on + strand at 639.508 kb on + strand at 639.508 kb on + strand at 639.508 kb on + strand at 639.508 kb on + strand at 639.508 kb on + strand at 639.508 kb on + strand at 639.508 kb on + strand at 639.508 kb on + strand at 639.508 kb on + strand at 639.509 kb on - strand at 639.509 kb on - strand at 639.522 kb on + strand at 639.522 kb on + strand at 639.523 kb on - strand at 639.523 kb on - strand at 639.523 kb on - strand at 639.560 kb on + strand at 639.560 kb on + strand at 639.560 kb on + strand at 639.560 kb on + strand at 639.561 kb on - strand at 639.561 kb on - strand at 639.561 kb on - strand at 639.807 kb on + strand, within AO353_03015 at 639.808 kb on - strand, within AO353_03015 at 639.915 kb on + strand, within AO353_03015 at 639.915 kb on + strand, within AO353_03015 at 639.915 kb on + strand, within AO353_03015 at 639.916 kb on - strand, within AO353_03015 at 639.916 kb on - strand, within AO353_03015 at 640.243 kb on - strand, within AO353_03015 at 640.377 kb on + strand, within AO353_03015 at 640.377 kb on + strand, within AO353_03015 at 640.377 kb on + strand, within AO353_03015 at 640.377 kb on + strand, within AO353_03015 at 640.377 kb on + strand, within AO353_03015 at 640.378 kb on - strand, within AO353_03015 at 640.378 kb on - strand, within AO353_03015
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 637,139 + AO353_03005 0.41 -2.2 637,139 + AO353_03005 0.41 -2.4 637,140 - AO353_03005 0.41 -1.5 637,298 + AO353_03005 0.53 +0.6 637,524 - AO353_03005 0.70 -2.2 637,524 - AO353_03005 0.70 -0.1 637,573 - AO353_03005 0.73 -1.5 637,862 + -1.0 637,877 + +0.1 637,877 + -0.7 637,877 + +0.2 637,877 + -1.3 637,881 + -0.4 637,897 + +1.1 637,897 + -0.8 637,919 + +0.4 637,919 + -2.2 637,919 + -1.1 637,919 + -0.6 637,920 - -0.7 637,920 - -0.0 637,920 - -2.0 637,957 + -1.5 637,957 + -1.8 637,957 + -1.3 637,958 - -1.1 637,958 - +1.2 637,958 - +0.0 637,959 + -1.0 637,960 - +1.7 637,960 - +0.4 637,960 - -1.5 637,960 - +0.1 637,960 - -0.7 638,007 + -0.1 638,007 + -0.6 638,007 + -1.0 638,007 + -0.4 638,007 + -1.3 638,007 + -0.8 638,008 - -1.8 638,008 - -0.3 638,008 - -1.1 638,016 + -0.6 638,016 + +0.4 638,016 + -1.1 638,016 + -0.1 638,017 - -1.1 638,017 - +1.1 638,017 - -1.3 638,030 - +0.9 638,030 - +0.4 638,030 - +0.1 638,037 + +1.2 638,037 + -2.6 638,037 + +0.2 638,037 + -1.6 638,037 + -0.7 638,037 + -1.5 638,037 + -0.4 638,037 + +0.4 638,038 - +0.7 638,038 - -0.2 638,038 - -1.7 638,038 - +0.1 638,038 - -1.9 638,038 - -0.6 638,038 - +1.4 638,038 - -0.9 638,038 - -0.6 638,038 - -1.0 638,038 - +0.9 638,038 - -0.9 638,038 - +2.2 638,038 - +0.1 638,038 - -0.6 638,059 + -1.3 638,059 + -1.4 638,059 + -0.8 638,059 + -1.7 638,059 + -1.0 638,060 - +0.1 638,060 - +0.4 638,060 - +0.1 638,060 - +1.4 638,060 - -1.3 638,138 - -0.6 638,149 + -2.4 638,149 + -2.8 638,149 + -1.1 638,150 - +3.4 638,150 - +1.1 638,152 + -1.8 638,152 + -2.9 638,153 - -1.0 638,153 - -0.1 638,317 + AO353_03010 0.18 -1.3 638,723 + AO353_03010 0.45 -2.6 638,724 - AO353_03010 0.45 -0.6 638,731 + AO353_03010 0.46 -0.5 638,732 - AO353_03010 0.46 -0.1 638,732 - AO353_03010 0.46 -0.4 638,732 - AO353_03010 0.46 -0.3 638,928 + AO353_03010 0.59 -0.6 638,928 + AO353_03010 0.59 -0.6 638,929 - AO353_03010 0.59 -1.3 638,929 - AO353_03010 0.59 -1.2 638,929 - AO353_03010 0.59 -1.7 639,088 + AO353_03010 0.70 -0.9 639,088 + AO353_03010 0.70 -1.3 639,088 + AO353_03010 0.70 -1.5 639,089 - AO353_03010 0.70 +0.2 639,089 - AO353_03010 0.70 -0.5 639,089 - AO353_03010 0.70 -1.6 639,200 + AO353_03010 0.78 -3.1 639,201 - AO353_03010 0.78 -0.7 639,201 - AO353_03010 0.78 +0.6 639,201 - AO353_03010 0.78 -1.1 639,201 - AO353_03010 0.78 -1.0 639,201 - AO353_03010 0.78 -0.9 639,508 + +1.0 639,508 + -3.0 639,508 + +0.1 639,508 + -0.3 639,508 + -1.3 639,508 + +1.4 639,508 + -2.3 639,508 + -0.4 639,508 + -0.1 639,508 + +0.4 639,509 - -2.1 639,509 - -1.4 639,522 + +1.7 639,522 + +0.6 639,523 - -2.3 639,523 - -2.3 639,523 - -1.3 639,560 + +1.0 639,560 + +1.3 639,560 + +0.6 639,560 + +0.4 639,561 - +0.6 639,561 - +1.8 639,561 - -0.9 639,807 + AO353_03015 0.28 +0.4 639,808 - AO353_03015 0.28 +2.7 639,915 + AO353_03015 0.38 -0.3 639,915 + AO353_03015 0.38 +1.2 639,915 + AO353_03015 0.38 +0.9 639,916 - AO353_03015 0.38 +1.1 639,916 - AO353_03015 0.38 +0.5 640,243 - AO353_03015 0.70 +1.2 640,377 + AO353_03015 0.83 +1.6 640,377 + AO353_03015 0.83 +0.4 640,377 + AO353_03015 0.83 +1.4 640,377 + AO353_03015 0.83 +1.4 640,377 + AO353_03015 0.83 +2.7 640,378 - AO353_03015 0.84 +0.8 640,378 - AO353_03015 0.84 +1.6
Or see this region's nucleotide sequence