Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02900 and AO353_02905 are separated by 126 nucleotides AO353_02905 and AO353_02910 overlap by 4 nucleotides
AO353_02900: AO353_02900 - glutamate--ammonia ligase, at 615,172 to 616,515
_02900
AO353_02905: AO353_02905 - histidine kinase, at 616,642 to 617,334
_02905
AO353_02910: AO353_02910 - chemotaxis protein CheY, at 617,331 to 618,935
_02910
Position (kb) 617
618
619 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 616.521 kb on + strand at 616.521 kb on + strand at 616.521 kb on + strand at 616.521 kb on + strand at 616.521 kb on + strand at 616.521 kb on + strand at 616.521 kb on + strand at 616.522 kb on - strand at 616.559 kb on - strand at 616.559 kb on - strand at 616.559 kb on - strand at 616.565 kb on + strand at 616.565 kb on + strand at 616.565 kb on + strand at 616.566 kb on - strand at 616.566 kb on - strand at 616.566 kb on - strand at 616.585 kb on + strand at 616.585 kb on + strand at 616.586 kb on - strand at 616.652 kb on + strand at 616.652 kb on + strand at 616.653 kb on - strand at 616.740 kb on + strand, within AO353_02905 at 616.740 kb on + strand, within AO353_02905 at 616.741 kb on - strand, within AO353_02905 at 616.741 kb on - strand at 616.755 kb on - strand, within AO353_02905 at 616.755 kb on - strand, within AO353_02905 at 616.755 kb on - strand, within AO353_02905 at 616.798 kb on + strand, within AO353_02905 at 616.798 kb on + strand, within AO353_02905 at 616.798 kb on + strand, within AO353_02905 at 616.798 kb on + strand, within AO353_02905 at 616.798 kb on + strand, within AO353_02905 at 616.798 kb on + strand, within AO353_02905 at 616.798 kb on + strand, within AO353_02905 at 616.799 kb on - strand, within AO353_02905 at 616.799 kb on - strand, within AO353_02905 at 616.799 kb on - strand, within AO353_02905 at 616.799 kb on - strand, within AO353_02905 at 616.802 kb on + strand, within AO353_02905 at 616.802 kb on + strand, within AO353_02905 at 616.802 kb on + strand, within AO353_02905 at 616.802 kb on + strand, within AO353_02905 at 616.802 kb on + strand, within AO353_02905 at 616.803 kb on - strand, within AO353_02905 at 616.803 kb on - strand, within AO353_02905 at 616.803 kb on - strand, within AO353_02905 at 616.803 kb on - strand, within AO353_02905 at 617.006 kb on + strand, within AO353_02905 at 617.006 kb on + strand, within AO353_02905 at 617.006 kb on + strand, within AO353_02905 at 617.006 kb on + strand, within AO353_02905 at 617.006 kb on + strand, within AO353_02905 at 617.007 kb on - strand, within AO353_02905 at 617.007 kb on - strand, within AO353_02905 at 617.007 kb on - strand, within AO353_02905 at 617.007 kb on - strand, within AO353_02905 at 617.007 kb on - strand, within AO353_02905 at 617.007 kb on - strand, within AO353_02905 at 617.007 kb on - strand, within AO353_02905 at 617.087 kb on + strand, within AO353_02905 at 617.087 kb on + strand, within AO353_02905 at 617.088 kb on - strand, within AO353_02905 at 617.088 kb on - strand, within AO353_02905 at 617.088 kb on - strand, within AO353_02905 at 617.126 kb on + strand, within AO353_02905 at 617.126 kb on + strand, within AO353_02905 at 617.126 kb on + strand, within AO353_02905 at 617.127 kb on - strand, within AO353_02905 at 617.127 kb on - strand, within AO353_02905 at 617.127 kb on - strand, within AO353_02905 at 617.127 kb on - strand, within AO353_02905 at 617.127 kb on - strand, within AO353_02905 at 617.174 kb on + strand, within AO353_02905 at 617.174 kb on + strand, within AO353_02905 at 617.175 kb on - strand, within AO353_02905 at 617.281 kb on + strand at 617.281 kb on + strand at 617.420 kb on + strand at 617.420 kb on + strand at 617.420 kb on + strand at 617.420 kb on + strand at 617.420 kb on + strand at 617.421 kb on - strand at 617.421 kb on - strand at 617.486 kb on + strand at 617.498 kb on + strand, within AO353_02910 at 617.498 kb on + strand, within AO353_02910 at 617.498 kb on + strand, within AO353_02910 at 617.498 kb on + strand, within AO353_02910 at 617.572 kb on + strand, within AO353_02910 at 617.572 kb on + strand, within AO353_02910 at 617.573 kb on - strand, within AO353_02910 at 617.573 kb on - strand, within AO353_02910 at 617.573 kb on - strand, within AO353_02910 at 617.683 kb on + strand, within AO353_02910 at 617.684 kb on - strand, within AO353_02910 at 617.987 kb on + strand, within AO353_02910 at 617.987 kb on + strand, within AO353_02910 at 617.988 kb on - strand, within AO353_02910 at 617.988 kb on - strand, within AO353_02910 at 618.232 kb on + strand, within AO353_02910 at 618.232 kb on + strand, within AO353_02910 at 618.232 kb on + strand, within AO353_02910 at 618.232 kb on + strand, within AO353_02910 at 618.232 kb on + strand, within AO353_02910 at 618.232 kb on + strand, within AO353_02910 at 618.232 kb on + strand, within AO353_02910 at 618.233 kb on - strand, within AO353_02910 at 618.233 kb on - strand, within AO353_02910 at 618.233 kb on - strand, within AO353_02910 at 618.233 kb on - strand, within AO353_02910 at 618.233 kb on - strand, within AO353_02910 at 618.233 kb on - strand, within AO353_02910 at 618.233 kb on - strand, within AO353_02910 at 618.233 kb on - strand, within AO353_02910 at 618.274 kb on + strand, within AO353_02910 at 618.334 kb on + strand, within AO353_02910 at 618.334 kb on + strand, within AO353_02910 at 618.334 kb on + strand, within AO353_02910 at 618.334 kb on + strand, within AO353_02910 at 618.334 kb on + strand, within AO353_02910 at 618.335 kb on - strand, within AO353_02910 at 618.335 kb on - strand, within AO353_02910 at 618.335 kb on - strand, within AO353_02910 at 618.335 kb on - strand, within AO353_02910 at 618.335 kb on - strand, within AO353_02910 at 618.335 kb on - strand, within AO353_02910 at 618.335 kb on - strand, within AO353_02910 at 618.335 kb on - strand, within AO353_02910 at 618.373 kb on + strand, within AO353_02910 at 618.373 kb on + strand, within AO353_02910 at 618.373 kb on + strand, within AO353_02910 at 618.373 kb on + strand, within AO353_02910 at 618.374 kb on - strand, within AO353_02910 at 618.374 kb on - strand, within AO353_02910 at 618.374 kb on - strand, within AO353_02910 at 618.374 kb on - strand, within AO353_02910 at 618.374 kb on - strand, within AO353_02910 at 618.374 kb on - strand, within AO353_02910 at 618.374 kb on - strand, within AO353_02910 at 618.374 kb on - strand, within AO353_02910 at 618.476 kb on + strand, within AO353_02910 at 618.608 kb on - strand, within AO353_02910 at 618.608 kb on - strand, within AO353_02910 at 618.608 kb on - strand, within AO353_02910 at 618.635 kb on + strand, within AO353_02910 at 618.635 kb on + strand, within AO353_02910 at 618.636 kb on - strand, within AO353_02910 at 618.636 kb on - strand, within AO353_02910 at 618.636 kb on - strand, within AO353_02910 at 618.636 kb on - strand, within AO353_02910 at 618.636 kb on - strand, within AO353_02910 at 618.760 kb on + strand, within AO353_02910 at 618.761 kb on - strand, within AO353_02910 at 618.878 kb on + strand at 618.878 kb on + strand at 618.879 kb on - strand at 618.926 kb on - strand at 618.953 kb on + strand at 618.953 kb on + strand at 618.953 kb on + strand at 618.953 kb on + strand at 618.953 kb on + strand at 618.953 kb on + strand at 618.953 kb on + strand at 618.953 kb on + strand at 618.954 kb on - strand at 618.954 kb on - strand at 618.954 kb on - strand at 618.954 kb on - strand at 618.954 kb on - strand at 619.064 kb on + strand at 619.066 kb on + strand at 619.066 kb on + strand at 619.066 kb on + strand at 619.066 kb on + strand at 619.066 kb on + strand at 619.066 kb on + strand at 619.066 kb on + strand at 619.066 kb on + strand at 619.066 kb on + strand at 619.066 kb on + strand at 619.067 kb on - strand at 619.067 kb on - strand at 619.067 kb on - strand at 619.067 kb on - strand at 619.067 kb on - strand at 619.067 kb on - strand at 619.067 kb on - strand at 619.067 kb on - strand at 619.067 kb on - strand at 619.067 kb on - strand at 619.067 kb on - strand at 619.067 kb on - strand at 619.067 kb on - strand at 619.110 kb on + strand at 619.110 kb on + strand at 619.110 kb on + strand at 619.178 kb on + strand at 619.178 kb on + strand at 619.179 kb on - strand at 619.179 kb on - strand at 619.179 kb on - strand at 619.181 kb on + strand at 619.181 kb on + strand at 619.190 kb on + strand at 619.190 kb on + strand at 619.190 kb on + strand at 619.190 kb on + strand at 619.190 kb on + strand at 619.191 kb on - strand at 619.191 kb on - strand at 619.246 kb on + strand at 619.246 kb on + strand at 619.247 kb on - strand at 619.247 kb on - strand at 619.247 kb on - strand at 619.274 kb on + strand at 619.274 kb on + strand at 619.274 kb on + strand at 619.323 kb on + strand at 619.323 kb on + strand at 619.323 kb on + strand at 619.323 kb on + strand at 619.323 kb on + strand at 619.323 kb on + strand at 619.323 kb on + strand at 619.323 kb on + strand at 619.324 kb on - strand at 619.324 kb on - strand at 619.324 kb on - strand at 619.324 kb on - strand at 619.324 kb on - strand at 619.324 kb on - strand at 619.324 kb on - strand at 619.372 kb on + strand at 619.372 kb on + strand at 619.373 kb on - strand at 619.373 kb on - strand at 619.381 kb on + strand at 619.381 kb on + strand at 619.381 kb on + strand at 619.381 kb on + strand at 619.382 kb on - strand at 619.382 kb on - strand at 619.392 kb on - strand at 619.408 kb on + strand at 619.408 kb on + strand at 619.408 kb on + strand at 619.408 kb on + strand at 619.454 kb on + strand at 619.454 kb on + strand at 619.454 kb on + strand at 619.454 kb on + strand at 619.454 kb on + strand at 619.455 kb on - strand at 619.455 kb on - strand at 619.455 kb on - strand at 619.455 kb on - strand at 619.455 kb on - strand at 619.459 kb on + strand at 619.459 kb on + strand at 619.459 kb on + strand at 619.460 kb on - strand at 619.651 kb on + strand at 619.651 kb on + strand at 619.652 kb on - strand at 619.652 kb on - strand at 619.727 kb on + strand at 619.727 kb on + strand at 619.727 kb on + strand at 619.727 kb on + strand at 619.727 kb on + strand at 619.727 kb on + strand at 619.727 kb on + strand at 619.727 kb on + strand at 619.727 kb on + strand at 619.727 kb on + strand at 619.727 kb on + strand at 619.727 kb on + strand at 619.727 kb on + strand at 619.727 kb on + strand at 619.727 kb on + strand at 619.727 kb on + strand at 619.727 kb on + strand at 619.727 kb on + strand at 619.727 kb on + strand at 619.727 kb on + strand at 619.727 kb on + strand at 619.728 kb on - strand at 619.728 kb on - strand at 619.728 kb on - strand at 619.728 kb on - strand at 619.728 kb on - strand at 619.728 kb on - strand at 619.728 kb on - strand at 619.728 kb on - strand at 619.728 kb on - strand at 619.728 kb on - strand at 619.728 kb on - strand at 619.728 kb on - strand at 619.728 kb on - strand at 619.728 kb on - strand at 619.728 kb on - strand at 619.728 kb on - strand at 619.728 kb on - strand at 619.728 kb on - strand at 619.728 kb on - strand at 619.728 kb on - strand at 619.728 kb on - strand at 619.728 kb on - strand at 619.728 kb on - strand at 619.728 kb on - strand at 619.745 kb on + strand at 619.774 kb on + strand at 619.774 kb on + strand at 619.774 kb on + strand at 619.775 kb on - strand at 619.775 kb on - strand at 619.840 kb on + strand at 619.841 kb on - strand at 619.853 kb on + strand at 619.854 kb on - strand at 619.854 kb on - strand at 619.854 kb on - strand at 619.855 kb on + strand at 619.855 kb on + strand at 619.855 kb on + strand at 619.855 kb on + strand at 619.855 kb on + strand at 619.855 kb on + strand at 619.855 kb on + strand at 619.856 kb on - strand at 619.856 kb on - strand at 619.856 kb on - strand at 619.856 kb on - strand at 619.856 kb on - strand at 619.856 kb on - strand at 619.856 kb on - strand at 619.856 kb on - strand at 619.856 kb on - strand at 619.856 kb on - strand at 619.856 kb on - strand at 619.856 kb on - strand at 619.856 kb on - strand at 619.856 kb on - strand at 619.856 kb on - strand at 619.856 kb on - strand at 619.875 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 616,521 + +0.4 616,521 + +0.1 616,521 + -0.6 616,521 + -0.9 616,521 + -1.6 616,521 + +0.4 616,521 + +0.2 616,522 - -0.7 616,559 - +0.4 616,559 - -1.0 616,559 - -0.4 616,565 + +0.9 616,565 + +0.7 616,565 + +0.9 616,566 - +1.4 616,566 - -1.4 616,566 - +0.9 616,585 + -0.7 616,585 + -0.9 616,586 - -0.8 616,652 + +0.3 616,652 + +0.3 616,653 - +3.4 616,740 + AO353_02905 0.14 +0.4 616,740 + AO353_02905 0.14 +0.5 616,741 - AO353_02905 0.14 -1.1 616,741 - +0.3 616,755 - AO353_02905 0.16 -1.5 616,755 - AO353_02905 0.16 -0.6 616,755 - AO353_02905 0.16 +0.9 616,798 + AO353_02905 0.23 -0.4 616,798 + AO353_02905 0.23 -0.7 616,798 + AO353_02905 0.23 -1.0 616,798 + AO353_02905 0.23 -0.7 616,798 + AO353_02905 0.23 -1.0 616,798 + AO353_02905 0.23 -0.9 616,798 + AO353_02905 0.23 +0.6 616,799 - AO353_02905 0.23 +0.2 616,799 - AO353_02905 0.23 -0.0 616,799 - AO353_02905 0.23 -0.8 616,799 - AO353_02905 0.23 -0.8 616,802 + AO353_02905 0.23 -1.2 616,802 + AO353_02905 0.23 -1.4 616,802 + AO353_02905 0.23 +0.3 616,802 + AO353_02905 0.23 +1.3 616,802 + AO353_02905 0.23 +1.1 616,803 - AO353_02905 0.23 -0.7 616,803 - AO353_02905 0.23 +0.9 616,803 - AO353_02905 0.23 -0.1 616,803 - AO353_02905 0.23 -1.5 617,006 + AO353_02905 0.53 -2.1 617,006 + AO353_02905 0.53 +0.1 617,006 + AO353_02905 0.53 +0.9 617,006 + AO353_02905 0.53 -0.1 617,006 + AO353_02905 0.53 +0.4 617,007 - AO353_02905 0.53 -0.1 617,007 - AO353_02905 0.53 -1.6 617,007 - AO353_02905 0.53 -1.1 617,007 - AO353_02905 0.53 +1.0 617,007 - AO353_02905 0.53 -1.3 617,007 - AO353_02905 0.53 -0.1 617,007 - AO353_02905 0.53 +0.7 617,087 + AO353_02905 0.64 -2.1 617,087 + AO353_02905 0.64 +0.6 617,088 - AO353_02905 0.64 +0.4 617,088 - AO353_02905 0.64 -0.9 617,088 - AO353_02905 0.64 -0.1 617,126 + AO353_02905 0.70 -0.2 617,126 + AO353_02905 0.70 -2.0 617,126 + AO353_02905 0.70 -0.4 617,127 - AO353_02905 0.70 +0.8 617,127 - AO353_02905 0.70 +0.7 617,127 - AO353_02905 0.70 -0.1 617,127 - AO353_02905 0.70 +0.5 617,127 - AO353_02905 0.70 +1.3 617,174 + AO353_02905 0.77 -0.4 617,174 + AO353_02905 0.77 +0.4 617,175 - AO353_02905 0.77 -2.5 617,281 + -1.0 617,281 + -1.1 617,420 + -1.3 617,420 + +0.9 617,420 + -1.6 617,420 + +0.6 617,420 + -0.4 617,421 - -1.0 617,421 - -0.7 617,486 + +1.1 617,498 + AO353_02910 0.10 -0.9 617,498 + AO353_02910 0.10 -1.1 617,498 + AO353_02910 0.10 +0.1 617,498 + AO353_02910 0.10 +0.4 617,572 + AO353_02910 0.15 -0.6 617,572 + AO353_02910 0.15 +1.0 617,573 - AO353_02910 0.15 -1.1 617,573 - AO353_02910 0.15 -0.2 617,573 - AO353_02910 0.15 -1.0 617,683 + AO353_02910 0.22 +2.1 617,684 - AO353_02910 0.22 +0.0 617,987 + AO353_02910 0.41 -0.4 617,987 + AO353_02910 0.41 -0.4 617,988 - AO353_02910 0.41 +1.2 617,988 - AO353_02910 0.41 -0.9 618,232 + AO353_02910 0.56 +2.4 618,232 + AO353_02910 0.56 +1.6 618,232 + AO353_02910 0.56 -2.0 618,232 + AO353_02910 0.56 -2.1 618,232 + AO353_02910 0.56 -1.4 618,232 + AO353_02910 0.56 +0.2 618,232 + AO353_02910 0.56 +1.4 618,233 - AO353_02910 0.56 +1.9 618,233 - AO353_02910 0.56 -0.3 618,233 - AO353_02910 0.56 +1.7 618,233 - AO353_02910 0.56 +0.6 618,233 - AO353_02910 0.56 +1.4 618,233 - AO353_02910 0.56 -1.1 618,233 - AO353_02910 0.56 -2.6 618,233 - AO353_02910 0.56 -0.9 618,274 + AO353_02910 0.59 +0.5 618,334 + AO353_02910 0.62 +0.4 618,334 + AO353_02910 0.62 -0.9 618,334 + AO353_02910 0.62 -0.3 618,334 + AO353_02910 0.62 +0.2 618,334 + AO353_02910 0.62 +0.1 618,335 - AO353_02910 0.63 -0.1 618,335 - AO353_02910 0.63 +0.4 618,335 - AO353_02910 0.63 -0.3 618,335 - AO353_02910 0.63 +0.1 618,335 - AO353_02910 0.63 +0.4 618,335 - AO353_02910 0.63 -0.9 618,335 - AO353_02910 0.63 +0.2 618,335 - AO353_02910 0.63 -0.4 618,373 + AO353_02910 0.65 -0.9 618,373 + AO353_02910 0.65 +0.2 618,373 + AO353_02910 0.65 -0.5 618,373 + AO353_02910 0.65 +2.4 618,374 - AO353_02910 0.65 +0.3 618,374 - AO353_02910 0.65 -0.7 618,374 - AO353_02910 0.65 -0.6 618,374 - AO353_02910 0.65 -1.1 618,374 - AO353_02910 0.65 -0.4 618,374 - AO353_02910 0.65 +0.1 618,374 - AO353_02910 0.65 -0.6 618,374 - AO353_02910 0.65 +1.4 618,476 + AO353_02910 0.71 -2.4 618,608 - AO353_02910 0.80 -0.1 618,608 - AO353_02910 0.80 +0.6 618,608 - AO353_02910 0.80 -0.1 618,635 + AO353_02910 0.81 +0.1 618,635 + AO353_02910 0.81 +0.1 618,636 - AO353_02910 0.81 -0.6 618,636 - AO353_02910 0.81 +0.3 618,636 - AO353_02910 0.81 -0.0 618,636 - AO353_02910 0.81 +0.7 618,636 - AO353_02910 0.81 -1.6 618,760 + AO353_02910 0.89 -0.4 618,761 - AO353_02910 0.89 +0.9 618,878 + -1.4 618,878 + -2.2 618,879 - -1.6 618,926 - -1.1 618,953 + +1.7 618,953 + -0.6 618,953 + -1.4 618,953 + +1.6 618,953 + -0.1 618,953 + -1.4 618,953 + +2.4 618,953 + -0.4 618,954 - -1.6 618,954 - -1.0 618,954 - -0.1 618,954 - -0.3 618,954 - -0.1 619,064 + -1.2 619,066 + +0.7 619,066 + -0.6 619,066 + +0.6 619,066 + -0.6 619,066 + -0.7 619,066 + +0.9 619,066 + -0.4 619,066 + +1.2 619,066 + -1.4 619,066 + +0.9 619,067 - -0.9 619,067 - -1.8 619,067 - +2.3 619,067 - -1.6 619,067 - -0.0 619,067 - -1.1 619,067 - -3.1 619,067 - -1.4 619,067 - -0.7 619,067 - -0.1 619,067 - +0.6 619,067 - -1.0 619,067 - +0.6 619,110 + -0.1 619,110 + -0.7 619,110 + -1.7 619,178 + -1.1 619,178 + -1.0 619,179 - +0.7 619,179 - +1.7 619,179 - +0.7 619,181 + +0.4 619,181 + +0.6 619,190 + +1.4 619,190 + -1.3 619,190 + +1.0 619,190 + -0.6 619,190 + +0.0 619,191 - -0.8 619,191 - +0.6 619,246 + -1.0 619,246 + -0.9 619,247 - -0.6 619,247 - -1.7 619,247 - -0.7 619,274 + +0.6 619,274 + +0.4 619,274 + +1.1 619,323 + +1.3 619,323 + -0.2 619,323 + -1.0 619,323 + -1.1 619,323 + -0.8 619,323 + +0.6 619,323 + -2.1 619,323 + +0.2 619,324 - -0.8 619,324 - +0.2 619,324 - +0.3 619,324 - -0.4 619,324 - -0.7 619,324 - -0.1 619,324 - +0.1 619,372 + -0.4 619,372 + -0.7 619,373 - -1.4 619,373 - +0.4 619,381 + -0.4 619,381 + +0.4 619,381 + -0.6 619,381 + -1.6 619,382 - +2.4 619,382 - -0.1 619,392 - -0.4 619,408 + -0.1 619,408 + +0.6 619,408 + +0.6 619,408 + +0.4 619,454 + -0.1 619,454 + +0.3 619,454 + +0.1 619,454 + +0.7 619,454 + -1.3 619,455 - -1.0 619,455 - -2.0 619,455 - +0.3 619,455 - -1.8 619,455 - -1.9 619,459 + -0.1 619,459 + -0.1 619,459 + +0.9 619,460 - -1.0 619,651 + -0.7 619,651 + -0.5 619,652 - -1.1 619,652 - -1.0 619,727 + +1.7 619,727 + -1.9 619,727 + +1.5 619,727 + -0.4 619,727 + +2.0 619,727 + +0.3 619,727 + -0.9 619,727 + -1.0 619,727 + -0.4 619,727 + +1.3 619,727 + -0.1 619,727 + -0.4 619,727 + -1.1 619,727 + +1.6 619,727 + -1.0 619,727 + +0.4 619,727 + -1.3 619,727 + -1.5 619,727 + +0.9 619,727 + +0.6 619,727 + -0.6 619,728 - +0.4 619,728 - +0.6 619,728 - +1.2 619,728 - -1.0 619,728 - -0.6 619,728 - -0.6 619,728 - 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Or see this region's nucleotide sequence