Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02865 and AO353_02870 are separated by 45 nucleotides AO353_02870 and AO353_02875 are separated by 81 nucleotides AO353_02875 and AO353_02880 are separated by 151 nucleotides
AO353_02865: AO353_02865 - chemotaxis protein, at 609,171 to 609,998
_02865
AO353_02870: AO353_02870 - chemotaxis protein CheW, at 610,044 to 610,976
_02870
AO353_02875: AO353_02875 - flagellar biosynthesis protein FlgA, at 611,058 to 611,819
_02875
AO353_02880: AO353_02880 - flagellar biosynthesis anti-sigma factor FlgM, at 611,971 to 612,297
_02880
Position (kb) 610
611 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 609.099 kb on + strand at 609.100 kb on - strand at 609.100 kb on - strand at 609.184 kb on + strand at 609.184 kb on + strand at 609.184 kb on + strand at 609.184 kb on + strand at 609.185 kb on - strand at 609.185 kb on - strand at 609.185 kb on - strand at 609.185 kb on - strand at 609.185 kb on - strand at 609.265 kb on + strand, within AO353_02865 at 609.331 kb on + strand, within AO353_02865 at 609.331 kb on + strand, within AO353_02865 at 609.331 kb on + strand, within AO353_02865 at 609.331 kb on + strand, within AO353_02865 at 609.331 kb on + strand, within AO353_02865 at 609.331 kb on + strand, within AO353_02865 at 609.332 kb on - strand, within AO353_02865 at 609.332 kb on - strand, within AO353_02865 at 609.332 kb on - strand, within AO353_02865 at 609.332 kb on - strand, within AO353_02865 at 609.332 kb on - strand, within AO353_02865 at 609.332 kb on - strand, within AO353_02865 at 609.332 kb on - strand, within AO353_02865 at 609.339 kb on + strand, within AO353_02865 at 609.340 kb on - strand, within AO353_02865 at 609.340 kb on - strand, within AO353_02865 at 609.340 kb on - strand, within AO353_02865 at 609.340 kb on - strand, within AO353_02865 at 609.340 kb on - strand, within AO353_02865 at 609.340 kb on - strand, within AO353_02865 at 609.340 kb on - strand, within AO353_02865 at 609.340 kb on - strand, within AO353_02865 at 609.382 kb on + strand, within AO353_02865 at 609.382 kb on + strand, within AO353_02865 at 609.382 kb on + strand, within AO353_02865 at 609.382 kb on + strand, within AO353_02865 at 609.382 kb on + strand, within AO353_02865 at 609.382 kb on + strand, within AO353_02865 at 609.382 kb on + strand, within AO353_02865 at 609.382 kb on + strand, within AO353_02865 at 609.383 kb on - strand, within AO353_02865 at 609.383 kb on - strand, within AO353_02865 at 609.472 kb on + strand, within AO353_02865 at 609.472 kb on + strand, within AO353_02865 at 609.473 kb on - strand, within AO353_02865 at 609.473 kb on - strand, within AO353_02865 at 609.523 kb on + strand, within AO353_02865 at 609.524 kb on - strand, within AO353_02865 at 609.524 kb on - strand, within AO353_02865 at 609.605 kb on + strand, within AO353_02865 at 609.646 kb on + strand, within AO353_02865 at 609.754 kb on + strand, within AO353_02865 at 609.754 kb on + strand, within AO353_02865 at 609.755 kb on - strand, within AO353_02865 at 609.755 kb on - strand, within AO353_02865 at 609.913 kb on + strand, within AO353_02865 at 609.913 kb on + strand, within AO353_02865 at 609.913 kb on + strand, within AO353_02865 at 609.913 kb on + strand, within AO353_02865 at 609.913 kb on + strand, within AO353_02865 at 609.913 kb on + strand, within AO353_02865 at 609.914 kb on - strand, within AO353_02865 at 609.914 kb on - strand, within AO353_02865 at 609.914 kb on - strand, within AO353_02865 at 609.914 kb on - strand, within AO353_02865 at 609.914 kb on - strand, within AO353_02865 at 609.914 kb on - strand, within AO353_02865 at 609.914 kb on - strand, within AO353_02865 at 609.986 kb on + strand at 609.992 kb on + strand at 610.012 kb on + strand at 610.012 kb on + strand at 610.013 kb on - strand at 610.013 kb on - strand at 610.013 kb on - strand at 610.045 kb on + strand at 610.046 kb on - strand at 610.053 kb on - strand at 610.053 kb on - strand at 610.053 kb on - strand at 610.158 kb on + strand, within AO353_02870 at 610.158 kb on + strand, within AO353_02870 at 610.158 kb on + strand, within AO353_02870 at 610.158 kb on + strand, within AO353_02870 at 610.158 kb on + strand, within AO353_02870 at 610.158 kb on + strand, within AO353_02870 at 610.159 kb on - strand, within AO353_02870 at 610.159 kb on - strand, within AO353_02870 at 610.159 kb on - strand at 610.159 kb on - strand, within AO353_02870 at 610.159 kb on - strand, within AO353_02870 at 610.159 kb on - strand, within AO353_02870 at 610.175 kb on + strand, within AO353_02870 at 610.175 kb on + strand, within AO353_02870 at 610.175 kb on + strand, within AO353_02870 at 610.175 kb on + strand, within AO353_02870 at 610.175 kb on + strand, within AO353_02870 at 610.175 kb on + strand, within AO353_02870 at 610.175 kb on + strand, within AO353_02870 at 610.175 kb on + strand, within AO353_02870 at 610.175 kb on + strand, within AO353_02870 at 610.175 kb on + strand, within AO353_02870 at 610.175 kb on + strand, within AO353_02870 at 610.175 kb on + strand, within AO353_02870 at 610.176 kb on - strand, within AO353_02870 at 610.176 kb on - strand, within AO353_02870 at 610.176 kb on - strand, within AO353_02870 at 610.176 kb on - strand, within AO353_02870 at 610.176 kb on - strand, within AO353_02870 at 610.176 kb on - strand, within AO353_02870 at 610.176 kb on - strand, within AO353_02870 at 610.176 kb on - strand, within AO353_02870 at 610.176 kb on - strand, within AO353_02870 at 610.229 kb on + strand, within AO353_02870 at 610.229 kb on + strand, within AO353_02870 at 610.229 kb on + strand, within AO353_02870 at 610.230 kb on - strand, within AO353_02870 at 610.237 kb on + strand, within AO353_02870 at 610.238 kb on - strand at 610.328 kb on - strand, within AO353_02870 at 610.328 kb on - strand, within AO353_02870 at 610.328 kb on - strand, within AO353_02870 at 610.328 kb on - strand, within AO353_02870 at 610.583 kb on - strand, within AO353_02870 at 610.583 kb on - strand, within AO353_02870 at 610.583 kb on - strand, within AO353_02870 at 610.687 kb on + strand, within AO353_02870 at 610.687 kb on + strand, within AO353_02870 at 610.687 kb on + strand, within AO353_02870 at 610.688 kb on - strand, within AO353_02870 at 610.688 kb on - strand, within AO353_02870 at 610.688 kb on - strand, within AO353_02870 at 610.688 kb on - strand, within AO353_02870 at 610.784 kb on + strand, within AO353_02870 at 610.784 kb on + strand, within AO353_02870 at 610.879 kb on + strand, within AO353_02870 at 610.932 kb on + strand at 610.965 kb on + strand at 610.965 kb on + strand at 610.966 kb on - strand at 610.966 kb on - strand at 610.966 kb on - strand at 610.988 kb on + strand at 610.989 kb on - strand at 610.989 kb on - strand at 610.989 kb on - strand at 610.989 kb on - strand at 610.989 kb on - strand at 610.989 kb on - strand at 610.989 kb on - strand at 610.989 kb on - strand at 610.999 kb on + strand at 610.999 kb on + strand at 610.999 kb on + strand at 610.999 kb on + strand at 610.999 kb on + strand at 610.999 kb on + strand at 611.000 kb on - strand at 611.000 kb on - strand at 611.000 kb on - strand at 611.000 kb on - strand at 611.000 kb on - strand at 611.000 kb on - strand at 611.000 kb on - strand at 611.028 kb on - strand at 611.051 kb on - strand at 611.051 kb on - strand at 611.105 kb on + strand at 611.131 kb on + strand at 611.131 kb on + strand at 611.131 kb on + strand at 611.132 kb on - strand at 611.174 kb on + strand, within AO353_02875 at 611.188 kb on + strand, within AO353_02875 at 611.188 kb on + strand, within AO353_02875 at 611.188 kb on + strand, within AO353_02875 at 611.188 kb on + strand, within AO353_02875 at 611.188 kb on + strand, within AO353_02875 at 611.188 kb on + strand, within AO353_02875 at 611.188 kb on + strand, within AO353_02875 at 611.189 kb on - strand, within AO353_02875 at 611.189 kb on - strand, within AO353_02875 at 611.189 kb on - strand, within AO353_02875 at 611.189 kb on - strand, within AO353_02875 at 611.189 kb on - strand, within AO353_02875 at 611.227 kb on + strand, within AO353_02875 at 611.227 kb on + strand, within AO353_02875 at 611.227 kb on + strand, within AO353_02875 at 611.227 kb on + strand, within AO353_02875 at 611.227 kb on + strand, within AO353_02875 at 611.227 kb on + strand, within AO353_02875 at 611.228 kb on - strand, within AO353_02875 at 611.228 kb on - strand, within AO353_02875 at 611.235 kb on + strand, within AO353_02875 at 611.235 kb on + strand, within AO353_02875 at 611.235 kb on + strand, within AO353_02875 at 611.236 kb on - strand, within AO353_02875 at 611.236 kb on - strand, within AO353_02875 at 611.236 kb on - strand, within AO353_02875 at 611.351 kb on + strand, within AO353_02875 at 611.352 kb on - strand, within AO353_02875 at 611.353 kb on + strand, within AO353_02875 at 611.353 kb on + strand, within AO353_02875 at 611.353 kb on + strand, within AO353_02875 at 611.354 kb on - strand, within AO353_02875 at 611.354 kb on - strand, within AO353_02875 at 611.354 kb on - strand, within AO353_02875 at 611.354 kb on - strand, within AO353_02875 at 611.354 kb on - strand, within AO353_02875 at 611.354 kb on - strand, within AO353_02875 at 611.354 kb on - strand, within AO353_02875 at 611.354 kb on - strand, within AO353_02875 at 611.354 kb on - strand, within AO353_02875 at 611.541 kb on + strand, within AO353_02875 at 611.609 kb on + strand, within AO353_02875 at 611.610 kb on - strand, within AO353_02875 at 611.610 kb on - strand, within AO353_02875 at 611.817 kb on + strand at 611.817 kb on + strand at 611.817 kb on + strand at 611.817 kb on + strand at 611.817 kb on + strand at 611.817 kb on + strand at 611.817 kb on + strand at 611.817 kb on + strand at 611.817 kb on + strand at 611.817 kb on + strand at 611.817 kb on + strand at 611.817 kb on + strand at 611.817 kb on + strand at 611.817 kb on + strand at 611.818 kb on - strand at 611.818 kb on - strand at 611.818 kb on - strand at 611.818 kb on - strand at 611.818 kb on - strand at 611.818 kb on - strand at 611.818 kb on - strand at 611.818 kb on - strand at 611.818 kb on - strand at 611.818 kb on - strand at 611.818 kb on - strand at 611.818 kb on - strand at 611.821 kb on + strand at 611.821 kb on + strand at 611.821 kb on + strand at 611.821 kb on + strand at 611.822 kb on - strand at 611.822 kb on - strand at 611.822 kb on - strand at 611.822 kb on - strand at 611.822 kb on - strand at 611.822 kb on - strand at 611.848 kb on + strand at 611.873 kb on + strand at 611.873 kb on + strand at 611.873 kb on + strand at 611.899 kb on - strand at 611.899 kb on - strand at 611.907 kb on + strand at 611.907 kb on + strand at 611.907 kb on + strand at 611.908 kb on - strand at 611.908 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 609,099 + -1.8 609,100 - -0.6 609,100 - -0.1 609,184 + +0.4 609,184 + -0.7 609,184 + -0.0 609,184 + -0.2 609,185 - +0.3 609,185 - -2.0 609,185 - -1.0 609,185 - +0.3 609,185 - -0.7 609,265 + AO353_02865 0.11 -1.4 609,331 + AO353_02865 0.19 +1.6 609,331 + AO353_02865 0.19 -0.4 609,331 + AO353_02865 0.19 +0.7 609,331 + AO353_02865 0.19 -0.5 609,331 + AO353_02865 0.19 -0.1 609,331 + AO353_02865 0.19 -0.5 609,332 - AO353_02865 0.19 +0.4 609,332 - AO353_02865 0.19 -0.4 609,332 - AO353_02865 0.19 +1.1 609,332 - AO353_02865 0.19 -1.5 609,332 - AO353_02865 0.19 -0.6 609,332 - AO353_02865 0.19 -0.5 609,332 - AO353_02865 0.19 -1.0 609,339 + AO353_02865 0.20 -0.4 609,340 - AO353_02865 0.20 +0.4 609,340 - AO353_02865 0.20 +0.4 609,340 - AO353_02865 0.20 +0.3 609,340 - AO353_02865 0.20 +0.8 609,340 - AO353_02865 0.20 -1.3 609,340 - AO353_02865 0.20 +1.7 609,340 - AO353_02865 0.20 +1.2 609,340 - AO353_02865 0.20 +0.0 609,382 + AO353_02865 0.25 +3.4 609,382 + AO353_02865 0.25 -0.4 609,382 + AO353_02865 0.25 -0.7 609,382 + AO353_02865 0.25 -1.3 609,382 + AO353_02865 0.25 -0.7 609,382 + AO353_02865 0.25 +1.0 609,382 + AO353_02865 0.25 -0.5 609,382 + AO353_02865 0.25 -1.0 609,383 - AO353_02865 0.26 +0.3 609,383 - AO353_02865 0.26 -1.0 609,472 + AO353_02865 0.36 -1.0 609,472 + AO353_02865 0.36 -1.3 609,473 - AO353_02865 0.36 -1.5 609,473 - AO353_02865 0.36 -0.4 609,523 + AO353_02865 0.43 -0.5 609,524 - AO353_02865 0.43 -1.5 609,524 - AO353_02865 0.43 -0.9 609,605 + AO353_02865 0.52 -1.6 609,646 + AO353_02865 0.57 +2.7 609,754 + AO353_02865 0.70 -1.0 609,754 + AO353_02865 0.70 -0.7 609,755 - AO353_02865 0.71 -0.9 609,755 - AO353_02865 0.71 -0.5 609,913 + AO353_02865 0.90 +0.8 609,913 + AO353_02865 0.90 -0.2 609,913 + AO353_02865 0.90 -1.6 609,913 + AO353_02865 0.90 -1.3 609,913 + AO353_02865 0.90 +1.1 609,913 + AO353_02865 0.90 -0.7 609,914 - AO353_02865 0.90 +2.0 609,914 - AO353_02865 0.90 +0.0 609,914 - AO353_02865 0.90 -0.9 609,914 - AO353_02865 0.90 +0.4 609,914 - AO353_02865 0.90 -0.7 609,914 - AO353_02865 0.90 +0.1 609,914 - AO353_02865 0.90 +0.1 609,986 + +0.3 609,992 + -1.0 610,012 + +0.4 610,012 + +0.8 610,013 - +0.8 610,013 - -1.3 610,013 - -0.2 610,045 + -0.0 610,046 - +1.2 610,053 - +0.1 610,053 - -0.2 610,053 - +0.1 610,158 + AO353_02870 0.12 +1.9 610,158 + AO353_02870 0.12 +0.6 610,158 + AO353_02870 0.12 +1.8 610,158 + AO353_02870 0.12 -1.0 610,158 + AO353_02870 0.12 -1.4 610,158 + AO353_02870 0.12 -0.7 610,159 - AO353_02870 0.12 -0.5 610,159 - AO353_02870 0.12 +0.6 610,159 - +0.8 610,159 - AO353_02870 0.12 -0.2 610,159 - AO353_02870 0.12 +0.1 610,159 - AO353_02870 0.12 +0.6 610,175 + AO353_02870 0.14 +0.3 610,175 + AO353_02870 0.14 -1.6 610,175 + AO353_02870 0.14 -0.7 610,175 + AO353_02870 0.14 +0.1 610,175 + AO353_02870 0.14 +0.4 610,175 + AO353_02870 0.14 +0.3 610,175 + AO353_02870 0.14 +0.8 610,175 + AO353_02870 0.14 -1.4 610,175 + AO353_02870 0.14 +1.4 610,175 + AO353_02870 0.14 +0.6 610,175 + AO353_02870 0.14 +1.3 610,175 + AO353_02870 0.14 -0.3 610,176 - AO353_02870 0.14 -0.5 610,176 - AO353_02870 0.14 +1.8 610,176 - AO353_02870 0.14 -0.1 610,176 - AO353_02870 0.14 -0.6 610,176 - AO353_02870 0.14 -1.0 610,176 - AO353_02870 0.14 +1.4 610,176 - AO353_02870 0.14 +0.5 610,176 - AO353_02870 0.14 +1.3 610,176 - AO353_02870 0.14 -0.8 610,229 + AO353_02870 0.20 -2.1 610,229 + AO353_02870 0.20 +1.2 610,229 + AO353_02870 0.20 +1.5 610,230 - AO353_02870 0.20 -1.3 610,237 + AO353_02870 0.21 -0.4 610,238 - +0.8 610,328 - AO353_02870 0.30 -0.7 610,328 - AO353_02870 0.30 +0.2 610,328 - AO353_02870 0.30 +1.2 610,328 - AO353_02870 0.30 -0.2 610,583 - AO353_02870 0.58 +0.9 610,583 - AO353_02870 0.58 -0.4 610,583 - AO353_02870 0.58 -1.5 610,687 + AO353_02870 0.69 -0.4 610,687 + AO353_02870 0.69 -0.8 610,687 + AO353_02870 0.69 -0.3 610,688 - AO353_02870 0.69 +1.4 610,688 - AO353_02870 0.69 -0.9 610,688 - AO353_02870 0.69 -0.4 610,688 - AO353_02870 0.69 -1.8 610,784 + AO353_02870 0.79 +0.6 610,784 + AO353_02870 0.79 -0.6 610,879 + AO353_02870 0.89 +1.0 610,932 + -0.0 610,965 + -2.0 610,965 + +1.7 610,966 - -0.9 610,966 - -0.2 610,966 - +0.5 610,988 + +1.4 610,989 - -0.7 610,989 - -0.4 610,989 - +0.2 610,989 - -0.2 610,989 - +0.1 610,989 - +0.8 610,989 - -1.6 610,989 - -1.8 610,999 + +0.2 610,999 + -1.4 610,999 + -1.4 610,999 + +0.0 610,999 + -1.3 610,999 + +0.6 611,000 - -0.7 611,000 - +0.6 611,000 - -1.4 611,000 - +1.0 611,000 - -0.9 611,000 - -0.0 611,000 - -1.3 611,028 - +1.4 611,051 - -0.4 611,051 - -0.4 611,105 + -0.6 611,131 + -1.7 611,131 + -0.4 611,131 + +1.1 611,132 - -1.1 611,174 + AO353_02875 0.15 -0.7 611,188 + AO353_02875 0.17 -1.7 611,188 + AO353_02875 0.17 +0.3 611,188 + AO353_02875 0.17 -2.3 611,188 + AO353_02875 0.17 -0.0 611,188 + AO353_02875 0.17 -0.1 611,188 + AO353_02875 0.17 -0.7 611,188 + AO353_02875 0.17 +1.4 611,189 - AO353_02875 0.17 +0.6 611,189 - AO353_02875 0.17 -0.7 611,189 - AO353_02875 0.17 -1.1 611,189 - AO353_02875 0.17 -0.4 611,189 - AO353_02875 0.17 +1.0 611,227 + AO353_02875 0.22 +1.8 611,227 + AO353_02875 0.22 -0.7 611,227 + AO353_02875 0.22 -1.2 611,227 + AO353_02875 0.22 +0.3 611,227 + AO353_02875 0.22 +0.3 611,227 + AO353_02875 0.22 +0.8 611,228 - AO353_02875 0.22 +1.3 611,228 - AO353_02875 0.22 +0.6 611,235 + AO353_02875 0.23 -0.7 611,235 + AO353_02875 0.23 +2.8 611,235 + AO353_02875 0.23 -0.9 611,236 - AO353_02875 0.23 +0.6 611,236 - AO353_02875 0.23 +2.3 611,236 - AO353_02875 0.23 -2.3 611,351 + AO353_02875 0.38 -0.2 611,352 - AO353_02875 0.39 -0.6 611,353 + AO353_02875 0.39 -1.3 611,353 + AO353_02875 0.39 +0.0 611,353 + AO353_02875 0.39 -2.1 611,354 - AO353_02875 0.39 -2.3 611,354 - AO353_02875 0.39 -0.0 611,354 - AO353_02875 0.39 +0.6 611,354 - AO353_02875 0.39 -0.2 611,354 - AO353_02875 0.39 -0.4 611,354 - AO353_02875 0.39 +0.7 611,354 - AO353_02875 0.39 +1.4 611,354 - AO353_02875 0.39 +0.2 611,354 - AO353_02875 0.39 -0.7 611,541 + AO353_02875 0.63 +2.2 611,609 + AO353_02875 0.72 -1.7 611,610 - AO353_02875 0.72 -1.0 611,610 - AO353_02875 0.72 -0.5 611,817 + -1.2 611,817 + +0.1 611,817 + -1.1 611,817 + +0.7 611,817 + -1.4 611,817 + -0.7 611,817 + -0.2 611,817 + -0.2 611,817 + +1.0 611,817 + +0.9 611,817 + +0.4 611,817 + -2.4 611,817 + -2.4 611,817 + +2.4 611,818 - +0.4 611,818 - -0.8 611,818 - +0.9 611,818 - -1.6 611,818 - +0.1 611,818 - -0.6 611,818 - +0.1 611,818 - +0.3 611,818 - -0.2 611,818 - -0.5 611,818 - +0.0 611,818 - +0.1 611,821 + -1.4 611,821 + +2.4 611,821 + +1.1 611,821 + +0.4 611,822 - -0.4 611,822 - +0.6 611,822 - -0.0 611,822 - -0.8 611,822 - -1.6 611,822 - +0.6 611,848 + -0.9 611,873 + -1.4 611,873 + -1.5 611,873 + +0.1 611,899 - +0.4 611,899 - -1.0 611,907 + +1.4 611,907 + -2.2 611,907 + +0.4 611,908 - -1.0 611,908 - -1.0
Or see this region's nucleotide sequence